Wall clock time and date at job start Mon Mar 30 2020 03:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48200 * 110.84411 * 2 1 4 4 C 1.54592 * 102.49675 * 265.31958 * 3 2 1 5 5 C 1.51580 * 103.03678 * 334.63000 * 4 3 2 6 6 C 1.37939 * 131.49164 * 195.89813 * 5 4 3 7 7 C 1.38706 * 120.04008 * 179.76001 * 6 5 4 8 8 O 1.36003 * 120.11609 * 180.02562 * 7 6 5 9 9 C 1.42906 * 117.00293 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47094 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00455 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99579 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00376 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99757 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46967 * 60.00175 * 14 12 10 16 16 H 1.48504 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47260 * 300.00217 * 14 12 10 18 18 C 1.38719 * 119.77018 * 359.97438 * 7 6 5 19 19 C 1.37906 * 120.20307 * 0.12843 * 18 7 6 20 20 C 1.38922 * 107.98360 * 15.89369 * 5 4 3 21 21 H 1.08999 * 109.46901 * 179.80965 * 1 2 3 22 22 H 1.08998 * 109.47400 * 299.81268 * 1 2 3 23 23 H 1.08997 * 109.46688 * 59.80601 * 1 2 3 24 24 H 1.09000 * 110.73752 * 147.12286 * 3 2 1 25 25 H 1.09001 * 110.94489 * 23.60536 * 3 2 1 26 26 H 1.09002 * 110.73179 * 216.19209 * 4 3 2 27 27 H 1.09001 * 110.73116 * 93.06611 * 4 3 2 28 28 H 1.08004 * 119.97766 * 359.77362 * 6 5 4 29 29 H 1.09002 * 109.46377 * 299.99377 * 9 8 7 30 30 H 1.08994 * 109.47078 * 59.99116 * 9 8 7 31 31 H 0.97001 * 120.00355 * 179.97438 * 13 12 10 32 32 H 1.08002 * 119.89935 * 180.14948 * 18 7 6 33 33 H 1.08001 * 119.86597 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3850 0.0000 4 6 2.2305 1.6538 -1.5043 5 6 2.4301 0.2630 -2.0731 6 6 2.9529 -0.1663 -3.2752 7 6 3.0293 -1.5228 -3.5543 8 8 3.5450 -1.9478 -4.7389 9 6 3.5925 -3.3594 -4.9567 10 6 4.1892 -3.6387 -6.3120 11 1 4.5014 -2.8202 -6.9437 12 6 4.3375 -4.9392 -6.7451 13 7 3.9579 -5.9359 -5.9757 14 14 5.0779 -5.2856 -8.4249 15 1 6.4532 -4.7286 -8.4839 16 1 5.1271 -6.7524 -8.6512 17 1 4.2414 -4.6509 -9.4749 18 6 2.5787 -2.4445 -2.6207 19 6 2.0540 -2.0156 -1.4196 20 6 1.9719 -0.6538 -1.1353 21 1 -0.3633 -1.0277 -0.0034 22 1 -0.3634 0.5109 0.8916 23 1 -0.3632 0.5168 -0.8882 24 1 2.9338 1.4411 0.5534 25 1 1.2633 2.0811 0.4076 26 1 3.1219 2.2632 -1.6532 27 1 1.3588 2.1320 -1.9510 28 1 3.3033 0.5543 -3.9994 29 1 4.2064 -3.8254 -4.1860 30 1 2.5829 -3.7678 -4.9133 31 1 4.0619 -6.8509 -6.2806 32 1 2.6394 -3.5014 -2.8348 33 1 1.7053 -2.7379 -0.6965 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260837059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:44 Heat of formation + Delta-G solvation = -3.533894 kcal Electronic energy + Delta-G solvation = -15690.001770 eV Core-core repulsion = 13101.987617 eV Total energy + Delta-G solvation = -2588.014153 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51135 -38.31691 -35.22095 -32.88275 -32.17562 -29.42568 -28.41702 -27.37074 -25.56094 -23.25587 -22.62893 -20.76313 -20.27003 -17.11202 -16.58961 -16.23518 -15.64168 -15.15727 -14.72758 -14.51996 -14.05881 -13.76171 -13.16234 -12.92513 -12.78462 -12.49215 -12.15052 -11.89626 -11.62733 -11.57860 -11.21360 -11.00539 -10.95130 -10.49065 -10.19069 -10.09330 -9.29301 -8.85632 -8.58611 -8.42557 -7.13799 -6.24863 -4.28725 1.68505 1.83524 3.26040 3.28944 3.32228 3.76008 4.09266 4.15778 4.44661 4.73402 4.96581 5.01816 5.12266 5.24457 5.29832 5.42655 5.52000 5.58015 5.74727 5.76597 5.81698 5.92714 6.06249 6.26880 6.47969 6.66111 6.76943 6.97027 7.00419 7.07256 7.14841 7.46774 7.68079 7.95521 8.47532 8.83803 9.36486 10.86345 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.063046 B = 0.004879 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.015501 B = 5737.702206 C = 6065.637351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.491 5.491 3 C 0.050 3.950 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.141 4.141 7 C 0.148 3.852 8 O -0.316 6.316 9 C 0.193 3.807 10 C -0.525 4.525 11 H 0.070 0.930 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.914 3.086 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.197 4.197 19 C -0.065 4.065 20 C 0.019 3.981 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.029 0.971 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.138 0.862 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 11.690 10.397 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.210 5.210 3 C -0.077 4.077 4 C -0.146 4.146 5 C -0.105 4.105 6 C -0.160 4.160 7 C 0.100 3.900 8 O -0.229 6.229 9 C 0.120 3.880 10 C -0.563 4.563 11 H 0.088 0.912 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.740 3.260 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.216 4.216 19 C -0.084 4.084 20 C -0.076 4.076 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.142 0.858 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.276 11.324 10.730 16.468 hybrid contribution 0.060 -0.205 -1.399 1.415 sum -5.216 11.119 9.330 15.424 Atomic orbital electron populations 1.22478 0.86596 1.02514 1.00464 1.60441 1.07879 1.14126 1.38509 1.23174 1.01025 0.88239 0.95225 1.21630 1.02593 0.94377 0.95980 1.20558 1.01062 0.95151 0.93724 1.19539 1.05980 0.93373 0.97092 1.19054 0.91838 0.92591 0.86531 1.86134 1.75422 1.30300 1.31075 1.20651 0.97213 0.72286 0.97819 1.20937 1.42025 0.92744 1.00606 0.91202 1.24927 0.95353 0.95401 0.98445 1.69935 1.46731 0.99408 1.37189 0.86303 0.79746 0.77136 0.82802 1.19840 1.20973 1.19862 1.21266 1.05063 1.00656 0.94655 1.20196 0.99190 0.92758 0.96304 1.19251 1.04377 0.93434 0.90492 0.91189 0.91307 0.95190 0.89494 0.90124 0.89759 0.90395 0.85792 0.96013 0.96059 0.92260 0.84376 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.28 60.07 0.56 0.85 16 2 N -0.49 -6.60 5.35 -176.54 -0.94 -7.54 16 3 C 0.05 0.54 7.02 -2.27 -0.02 0.53 16 4 C -0.11 -1.27 6.96 -26.61 -0.19 -1.45 16 5 C -0.10 -1.63 6.23 -104.04 -0.65 -2.28 16 6 C -0.14 -2.56 9.97 -39.52 -0.39 -2.95 16 7 C 0.15 3.12 6.69 -39.23 -0.26 2.86 16 8 O -0.32 -7.80 10.13 -19.75 -0.20 -8.00 16 9 C 0.19 5.17 4.50 36.00 0.16 5.33 16 10 C -0.53 -15.07 9.43 -34.44 -0.32 -15.40 16 11 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 14 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.20 -3.86 9.02 -39.53 -0.36 -4.21 16 19 C -0.06 -1.10 10.06 -39.29 -0.40 -1.50 16 20 C 0.02 0.31 5.60 -83.29 -0.47 -0.16 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 23 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.08 0.67 7.77 -51.93 -0.40 0.26 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 29 H 0.02 0.60 7.66 -51.93 -0.40 0.21 16 30 H 0.02 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.14 2.80 6.30 -52.49 -0.33 2.47 16 33 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 280.29 15.07 4.22 4.22 Total: -1.00 -30.26 280.29 -8.09 -38.35 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.46 Total: -1.33 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.43 Total: -16.77 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: -0.21 Total: -32.75 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.20 Total: -8.00 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.26 -8.09 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260837059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.812 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds