Wall clock time and date at job start Mon Mar 30 2020 03:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48200 * 110.84411 * 2 1 4 4 C 1.54592 * 102.49675 * 265.31958 * 3 2 1 5 5 C 1.51580 * 103.03678 * 334.63000 * 4 3 2 6 6 C 1.37939 * 131.49164 * 195.89813 * 5 4 3 7 7 C 1.38706 * 120.04008 * 179.76001 * 6 5 4 8 8 O 1.36003 * 120.11609 * 180.02562 * 7 6 5 9 9 C 1.42906 * 117.00293 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47094 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00455 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99579 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00376 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99757 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46967 * 60.00175 * 14 12 10 16 16 H 1.48504 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47260 * 300.00217 * 14 12 10 18 18 C 1.38719 * 119.77018 * 359.97438 * 7 6 5 19 19 C 1.37906 * 120.20307 * 0.12843 * 18 7 6 20 20 C 1.38922 * 107.98360 * 15.89369 * 5 4 3 21 21 H 1.08999 * 109.46901 * 179.80965 * 1 2 3 22 22 H 1.08998 * 109.47400 * 299.81268 * 1 2 3 23 23 H 1.08997 * 109.46688 * 59.80601 * 1 2 3 24 24 H 1.09000 * 110.73752 * 147.12286 * 3 2 1 25 25 H 1.09001 * 110.94489 * 23.60536 * 3 2 1 26 26 H 1.09002 * 110.73179 * 216.19209 * 4 3 2 27 27 H 1.09001 * 110.73116 * 93.06611 * 4 3 2 28 28 H 1.08004 * 119.97766 * 359.77362 * 6 5 4 29 29 H 1.09002 * 109.46377 * 299.99377 * 9 8 7 30 30 H 1.08994 * 109.47078 * 59.99116 * 9 8 7 31 31 H 0.97001 * 120.00355 * 179.97438 * 13 12 10 32 32 H 1.08002 * 119.89935 * 180.14948 * 18 7 6 33 33 H 1.08001 * 119.86597 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3850 0.0000 4 6 2.2305 1.6538 -1.5043 5 6 2.4301 0.2630 -2.0731 6 6 2.9529 -0.1663 -3.2752 7 6 3.0293 -1.5228 -3.5543 8 8 3.5450 -1.9478 -4.7389 9 6 3.5925 -3.3594 -4.9567 10 6 4.1892 -3.6387 -6.3120 11 1 4.5014 -2.8202 -6.9437 12 6 4.3375 -4.9392 -6.7451 13 7 3.9579 -5.9359 -5.9757 14 14 5.0779 -5.2856 -8.4249 15 1 6.4532 -4.7286 -8.4839 16 1 5.1271 -6.7524 -8.6512 17 1 4.2414 -4.6509 -9.4749 18 6 2.5787 -2.4445 -2.6207 19 6 2.0540 -2.0156 -1.4196 20 6 1.9719 -0.6538 -1.1353 21 1 -0.3633 -1.0277 -0.0034 22 1 -0.3634 0.5109 0.8916 23 1 -0.3632 0.5168 -0.8882 24 1 2.9338 1.4411 0.5534 25 1 1.2633 2.0811 0.4076 26 1 3.1219 2.2632 -1.6532 27 1 1.3588 2.1320 -1.9510 28 1 3.3033 0.5543 -3.9994 29 1 4.2064 -3.8254 -4.1860 30 1 2.5829 -3.7678 -4.9133 31 1 4.0619 -6.8509 -6.2806 32 1 2.6394 -3.5014 -2.8348 33 1 1.7053 -2.7379 -0.6965 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260837059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:43 Heat of formation + Delta-G solvation = -22.634586 kcal Electronic energy + Delta-G solvation = -15690.830038 eV Core-core repulsion = 13101.987617 eV Total energy + Delta-G solvation = -2588.842421 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76850 -39.91921 -36.68324 -35.01028 -33.34813 -30.90511 -29.72547 -29.20184 -26.62761 -25.15732 -23.96919 -21.91104 -21.76101 -19.01474 -18.34585 -17.42368 -17.11198 -16.62049 -16.49057 -16.14964 -15.52636 -14.96410 -14.48582 -14.25491 -14.00616 -13.89724 -13.47120 -13.30838 -13.12964 -12.91490 -12.86523 -12.66002 -12.24572 -12.14369 -11.86893 -11.69427 -11.34823 -10.73245 -10.03170 -9.83356 -8.54784 -8.40130 -6.54951 0.28464 0.39730 1.38852 1.43771 1.52261 2.25230 2.57658 2.66113 2.87241 2.94575 3.65638 3.85470 4.00066 4.13449 4.19483 4.31954 4.42974 4.52811 4.63167 4.67087 4.78264 4.83543 4.93085 4.95340 4.97332 5.05896 5.22832 5.39122 5.41208 5.51444 5.59199 5.82264 6.00129 6.21740 6.49681 6.77898 7.17171 8.71998 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.063046 B = 0.004879 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.015501 B = 5737.702206 C = 6065.637351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.502 5.502 3 C 0.051 3.949 4 C -0.103 4.103 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.103 3.897 8 O -0.337 6.337 9 C 0.212 3.788 10 C -0.560 4.560 11 H 0.067 0.933 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.989 3.011 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.264 1.264 18 C -0.208 4.208 19 C -0.071 4.071 20 C 0.031 3.969 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.030 0.970 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.134 0.866 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.274 0.726 32 H 0.118 0.882 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 13.631 11.223 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.221 5.221 3 C -0.075 4.075 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.160 4.160 7 C 0.056 3.944 8 O -0.251 6.251 9 C 0.139 3.861 10 C -0.597 4.597 11 H 0.085 0.915 12 C -0.187 4.187 13 N -0.564 5.564 14 Si 0.810 3.190 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.189 1.189 18 C -0.228 4.228 19 C -0.091 4.091 20 C -0.065 4.065 21 H 0.082 0.918 22 H 0.117 0.883 23 H 0.049 0.951 24 H 0.111 0.889 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.152 0.848 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.763 13.292 11.592 18.555 hybrid contribution 0.115 -0.700 -1.440 1.606 sum -5.648 12.592 10.152 17.133 Atomic orbital electron populations 1.22566 0.84786 1.02759 1.01997 1.60449 1.09384 1.15712 1.36553 1.23377 1.02363 0.87151 0.94630 1.21771 1.04229 0.91783 0.96315 1.21082 0.99275 0.97926 0.92453 1.19718 1.05810 0.92106 0.98394 1.19425 0.94561 0.94256 0.86131 1.86047 1.77109 1.28462 1.33453 1.20184 0.95398 0.73764 0.96781 1.21292 1.43390 0.93484 1.01535 0.91497 1.25968 0.95168 0.94731 1.02834 1.70047 1.47086 1.00002 1.39240 0.85154 0.79073 0.77508 0.77219 1.18874 1.19727 1.18865 1.21161 1.06243 0.99531 0.95851 1.20328 0.98952 0.94206 0.95577 1.19546 1.02553 0.93064 0.91307 0.91793 0.88270 0.95082 0.88940 0.86656 0.87949 0.88593 0.84847 0.98113 0.98072 0.91675 0.86450 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.28 127.69 1.19 1.65 16 2 N -0.50 -11.85 5.35 -712.45 -3.81 -15.67 16 3 C 0.05 0.87 7.02 86.59 0.61 1.48 16 4 C -0.10 -2.03 6.96 30.67 0.21 -1.82 16 5 C -0.10 -3.16 6.23 -19.49 -0.12 -3.28 16 6 C -0.14 -5.17 9.97 22.31 0.22 -4.94 16 7 C 0.10 4.56 6.69 22.50 0.15 4.71 16 8 O -0.34 -17.68 10.13 -93.58 -0.95 -18.63 16 9 C 0.21 12.17 4.50 71.24 0.32 12.49 16 10 C -0.56 -33.44 9.43 25.60 0.24 -33.20 16 11 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 12 C 0.01 0.72 5.46 84.66 0.46 1.18 16 13 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 14 Si 0.99 43.86 29.54 68.60 2.03 45.88 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 18 C -0.21 -8.67 9.02 22.31 0.20 -8.47 16 19 C -0.07 -2.43 10.06 22.46 0.23 -2.21 16 20 C 0.03 0.94 5.60 38.21 0.21 1.16 16 21 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.10 1.28 8.11 -2.39 -0.02 1.26 16 23 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.12 1.23 7.77 -2.39 -0.02 1.22 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.00 0.07 7.66 -2.39 -0.02 0.05 16 30 H 0.00 0.09 7.67 -2.39 -0.02 0.07 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.12 5.25 6.30 -2.91 -0.02 5.23 16 33 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -67.75 280.29 2.57 -65.18 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.09 Total: 9.29 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.92 Total: -31.25 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -3.53 Total: -70.48 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.95 Total: -18.63 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.75 2.57 -65.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260837059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.550 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds