Wall clock time and date at job start Mon Mar 30 2020 03:33:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35896 * 117.00185 * 2 1
4 4 C 1.38862 * 120.01558 * 359.97438 * 3 2 1
5 5 C 1.38169 * 119.81341 * 180.02562 * 4 3 2
6 6 C 1.37975 * 120.32926 * 0.32220 * 5 4 3
7 7 C 1.39420 * 120.31709 * 359.58953 * 6 5 4
8 8 C 1.38355 * 120.01699 * 180.02562 * 3 2 1
9 9 C 1.51566 * 131.57457 * 359.64679 * 8 3 2
10 10 C 1.54598 * 102.81467 * 196.28249 * 9 8 3
11 11 H 1.09006 * 110.77837 * 92.69744 * 10 9 8
12 12 C 1.50695 * 110.78256 * 216.13735 * 10 9 8
13 13 H 1.07994 * 119.99531 * 354.65701 * 12 10 9
14 14 C 1.37878 * 120.00220 * 174.65322 * 12 10 9
15 15 N 1.31517 * 119.99596 * 0.02562 * 14 12 10
16 16 Si 1.86799 * 120.00133 * 179.97438 * 14 12 10
17 17 H 1.48503 * 109.46990 * 0.02562 * 16 14 12
18 18 H 1.48497 * 109.46889 * 120.00267 * 16 14 12
19 19 H 1.48496 * 109.47125 * 240.00495 * 16 14 12
20 20 N 1.40045 * 129.92005 * 179.88786 * 7 6 5
21 21 C 1.46898 * 110.99744 * 284.00283 * 20 7 6
22 22 H 1.09000 * 109.47113 * 59.99869 * 1 2 3
23 23 H 1.08996 * 109.47221 * 180.02562 * 1 2 3
24 24 H 1.09000 * 109.46756 * 300.00158 * 1 2 3
25 25 H 1.07998 * 120.09057 * 359.97438 * 4 3 2
26 26 H 1.08000 * 119.83727 * 180.11677 * 5 4 3
27 27 H 1.08000 * 119.84360 * 179.75396 * 6 5 4
28 28 H 1.09000 * 110.74210 * 77.94947 * 9 8 3
29 29 H 1.09009 * 110.74325 * 314.61372 * 9 8 3
30 30 H 0.97008 * 119.99604 * 179.97438 * 15 14 12
31 31 H 1.09004 * 109.47668 * 59.87502 * 21 20 7
32 32 H 1.09003 * 109.46980 * 179.87371 * 21 20 7
33 33 H 1.08998 * 109.47175 * 299.86818 * 21 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 1.2901 2.3756 -0.0005
5 6 1.9218 3.6045 -0.0011
6 6 3.2994 3.6797 -0.0078
7 6 4.0678 2.5164 -0.0054
8 6 3.4277 1.2836 -0.0005
9 6 4.4917 0.2042 0.0058
10 6 5.7629 0.9784 0.4238
11 1 5.9033 0.9370 1.5040
12 6 6.9748 0.4443 -0.2953
13 1 6.8875 -0.4278 -0.9261
14 6 8.1950 1.0692 -0.1478
15 7 8.3013 2.1311 0.6209
16 14 9.6974 0.4067 -1.0385
17 1 9.3147 -0.7878 -1.8335
18 1 10.2363 1.4522 -1.9450
19 1 10.7351 0.0295 -0.0456
20 7 5.4593 2.3584 -0.0131
21 6 6.0114 2.6206 -1.3489
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 0.2115 2.3212 -0.0014
26 1 1.3342 4.5107 0.0004
27 1 3.7850 4.6444 -0.0122
28 1 4.6111 -0.2260 -0.9885
29 1 4.2529 -0.5690 0.7361
30 1 9.1598 2.5705 0.7249
31 1 5.7721 3.6414 -1.6471
32 1 7.0937 2.4930 -1.3261
33 1 5.5783 1.9219 -2.0647
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261023465.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:43
Heat of formation + Delta-G solvation = 11.408476 kcal
Electronic energy + Delta-G solvation = -16504.325518 eV
Core-core repulsion = 13916.959315 eV
Total energy + Delta-G solvation = -2587.366203 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 233.116 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.16569 -38.30739 -35.59247 -32.56112 -31.16174 -28.83675 -28.41976 -26.98123
-24.86135 -24.57866 -21.35880 -20.56699 -19.75025 -16.99550 -16.60610 -15.86822
-15.43551 -15.02933 -14.71071 -14.51589 -13.80413 -13.50973 -12.70499 -12.47727
-12.14923 -12.07591 -11.86640 -11.64713 -11.35483 -11.02518 -10.85227 -10.61966
-10.50824 -10.35684 -10.10412 -9.85472 -9.21968 -8.54663 -8.26347 -7.63228
-6.73590 -6.09801 -4.22582 1.92393 2.02467 3.23135 3.32736 3.36412
3.64790 4.29300 4.32881 4.82126 5.13773 5.25404 5.26823 5.37086
5.47330 5.54577 5.81066 5.95919 6.08485 6.18269 6.35986 6.49126
6.59038 6.73457 6.84276 6.87894 6.96560 7.13341 7.24439 7.38660
7.63563 7.77707 7.82129 7.97757 8.34732 8.62895 8.91212 9.44133
10.94257
Molecular weight = 233.12amu
Principal moments of inertia in cm(-1)
A = 0.041386 B = 0.007525 C = 0.006684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 676.390481 B = 3720.101952 C = 4188.304366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.319 6.319
3 C 0.148 3.852
4 C -0.245 4.245
5 C -0.073 4.073
6 C -0.166 4.166
7 C 0.152 3.848
8 C -0.180 4.180
9 C -0.091 4.091
10 C 0.212 3.788
11 H 0.055 0.945
12 C -0.536 4.536
13 H 0.064 0.936
14 C 0.074 3.926
15 N -0.853 5.853
16 Si 0.887 3.113
17 H -0.271 1.271
18 H -0.281 1.281
19 H -0.282 1.282
20 N -0.473 5.473
21 C 0.063 3.937
22 H 0.050 0.950
23 H 0.092 0.908
24 H 0.050 0.950
25 H 0.119 0.881
26 H 0.118 0.882
27 H 0.118 0.882
28 H 0.069 0.931
29 H 0.064 0.936
30 H 0.262 0.738
31 H 0.030 0.970
32 H 0.099 0.901
33 H 0.013 0.987
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.688 0.374 -2.122 11.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.232 6.232
3 C 0.102 3.898
4 C -0.264 4.264
5 C -0.091 4.091
6 C -0.187 4.187
7 C 0.053 3.947
8 C -0.184 4.184
9 C -0.129 4.129
10 C 0.109 3.891
11 H 0.073 0.927
12 C -0.575 4.575
13 H 0.082 0.918
14 C -0.132 4.132
15 N -0.488 5.488
16 Si 0.714 3.286
17 H -0.196 1.196
18 H -0.207 1.207
19 H -0.207 1.207
20 N -0.188 5.188
21 C -0.082 4.082
22 H 0.069 0.931
23 H 0.111 0.889
24 H 0.069 0.931
25 H 0.137 0.863
26 H 0.136 0.864
27 H 0.136 0.864
28 H 0.087 0.913
29 H 0.082 0.918
30 H 0.072 0.928
31 H 0.048 0.952
32 H 0.118 0.882
33 H 0.031 0.969
Dipole moment (debyes) X Y Z Total
from point charges -11.122 0.684 -1.716 11.275
hybrid contribution 0.122 -0.589 -0.814 1.012
sum -11.001 0.095 -2.530 11.288
Atomic orbital electron populations
1.22936 0.79575 1.03107 1.00893 1.86093 1.20376 1.27697 1.89055
1.18383 0.90547 0.83755 0.97075 1.20865 0.98884 0.92264 1.14411
1.20513 0.93839 0.96476 0.98313 1.20405 0.92779 0.97142 1.08386
1.20088 0.91282 0.91864 0.91491 1.20679 0.90900 0.97994 1.08813
1.21732 0.93626 0.96227 1.01344 1.20288 0.90812 0.80779 0.97254
0.92679 1.21082 0.92283 1.13841 1.30306 0.91765 1.25035 0.98632
0.94591 0.94968 1.70141 1.24692 1.18432 1.35551 0.86619 0.82986
0.79254 0.79767 1.19561 1.20741 1.20740 1.60381 1.03120 1.30592
1.24717 1.22095 1.03446 0.96283 0.86393 0.93138 0.88920 0.93102
0.86287 0.86384 0.86419 0.91308 0.91750 0.92803 0.95151 0.88227
0.96873
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.35 9.81 101.05 0.99 1.35 16
2 O -0.32 -5.53 10.47 -19.41 -0.20 -5.73 16
3 C 0.15 2.80 6.68 -39.31 -0.26 2.54 16
4 C -0.24 -3.99 9.05 -39.38 -0.36 -4.35 16
5 C -0.07 -1.18 10.01 -39.70 -0.40 -1.58 16
6 C -0.17 -3.18 10.07 -39.24 -0.39 -3.58 16
7 C 0.15 3.40 5.59 -83.42 -0.47 2.93 16
8 C -0.18 -3.92 6.18 -103.91 -0.64 -4.57 16
9 C -0.09 -2.08 6.47 -26.62 -0.17 -2.25 16
10 C 0.21 5.46 3.20 -67.48 -0.22 5.24 16
11 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16
12 C -0.54 -14.25 7.16 -34.44 -0.25 -14.50 16
13 H 0.06 1.69 7.66 -52.49 -0.40 1.29 16
14 C 0.07 1.95 3.62 -17.82 -0.06 1.89 16
15 N -0.85 -23.68 12.17 55.43 0.67 -23.01 16
16 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16
17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
20 N -0.47 -11.73 4.92 -170.67 -0.84 -12.57 16
21 C 0.06 1.49 8.30 60.06 0.50 1.99 16
22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16
23 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16
25 H 0.12 1.56 6.31 -52.49 -0.33 1.23 16
26 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16
27 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16
28 H 0.07 1.58 7.81 -51.93 -0.41 1.17 16
29 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16
30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16
31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.10 2.55 4.78 -51.93 -0.25 2.30 16
33 H 0.01 0.30 8.11 -51.93 -0.42 -0.12 16
LS Contribution 271.53 15.07 4.09 4.09
Total: -1.00 -29.10 271.53 -7.30 -36.40
By element:
Atomic # 1 Polarization: 4.70 SS G_CDS: -4.28 Total: 0.43 kcal
Atomic # 6 Polarization: -13.15 SS G_CDS: -1.73 Total: -14.87 kcal
Atomic # 7 Polarization: -35.42 SS G_CDS: -0.16 Total: -35.58 kcal
Atomic # 8 Polarization: -5.53 SS G_CDS: -0.20 Total: -5.73 kcal
Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -29.10 -7.30 -36.40 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261023465.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.806 kcal
(2) G-P(sol) polarization free energy of solvation -29.098 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.708 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds