Wall clock time and date at job start Mon Mar 30 2020 03:33:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35896 * 117.00185 * 2 1
4 4 C 1.38862 * 120.01558 * 359.97438 * 3 2 1
5 5 C 1.38169 * 119.81341 * 180.02562 * 4 3 2
6 6 C 1.37975 * 120.32926 * 0.32220 * 5 4 3
7 7 C 1.39420 * 120.31709 * 359.58953 * 6 5 4
8 8 C 1.38355 * 120.01699 * 180.02562 * 3 2 1
9 9 C 1.51566 * 131.57457 * 359.64679 * 8 3 2
10 10 C 1.54598 * 102.81467 * 196.28249 * 9 8 3
11 11 H 1.09006 * 110.77837 * 92.69744 * 10 9 8
12 12 C 1.50695 * 110.78256 * 216.13735 * 10 9 8
13 13 H 1.07994 * 119.99531 * 354.65701 * 12 10 9
14 14 C 1.37878 * 120.00220 * 174.65322 * 12 10 9
15 15 N 1.31517 * 119.99596 * 0.02562 * 14 12 10
16 16 Si 1.86799 * 120.00133 * 179.97438 * 14 12 10
17 17 H 1.48503 * 109.46990 * 0.02562 * 16 14 12
18 18 H 1.48497 * 109.46889 * 120.00267 * 16 14 12
19 19 H 1.48496 * 109.47125 * 240.00495 * 16 14 12
20 20 N 1.40045 * 129.92005 * 179.88786 * 7 6 5
21 21 C 1.46898 * 110.99744 * 284.00283 * 20 7 6
22 22 H 1.09000 * 109.47113 * 59.99869 * 1 2 3
23 23 H 1.08996 * 109.47221 * 180.02562 * 1 2 3
24 24 H 1.09000 * 109.46756 * 300.00158 * 1 2 3
25 25 H 1.07998 * 120.09057 * 359.97438 * 4 3 2
26 26 H 1.08000 * 119.83727 * 180.11677 * 5 4 3
27 27 H 1.08000 * 119.84360 * 179.75396 * 6 5 4
28 28 H 1.09000 * 110.74210 * 77.94947 * 9 8 3
29 29 H 1.09009 * 110.74325 * 314.61372 * 9 8 3
30 30 H 0.97008 * 119.99604 * 179.97438 * 15 14 12
31 31 H 1.09004 * 109.47668 * 59.87502 * 21 20 7
32 32 H 1.09003 * 109.46980 * 179.87371 * 21 20 7
33 33 H 1.08998 * 109.47175 * 299.86818 * 21 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 1.2901 2.3756 -0.0005
5 6 1.9218 3.6045 -0.0011
6 6 3.2994 3.6797 -0.0078
7 6 4.0678 2.5164 -0.0054
8 6 3.4277 1.2836 -0.0005
9 6 4.4917 0.2042 0.0058
10 6 5.7629 0.9784 0.4238
11 1 5.9033 0.9370 1.5040
12 6 6.9748 0.4443 -0.2953
13 1 6.8875 -0.4278 -0.9261
14 6 8.1950 1.0692 -0.1478
15 7 8.3013 2.1311 0.6209
16 14 9.6974 0.4067 -1.0385
17 1 9.3147 -0.7878 -1.8335
18 1 10.2363 1.4522 -1.9450
19 1 10.7351 0.0295 -0.0456
20 7 5.4593 2.3584 -0.0131
21 6 6.0114 2.6206 -1.3489
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 0.2115 2.3212 -0.0014
26 1 1.3342 4.5107 0.0004
27 1 3.7850 4.6444 -0.0122
28 1 4.6111 -0.2260 -0.9885
29 1 4.2529 -0.5690 0.7361
30 1 9.1598 2.5705 0.7249
31 1 5.7721 3.6414 -1.6471
32 1 7.0937 2.4930 -1.3261
33 1 5.5783 1.9219 -2.0647
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261023465.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:43
Heat of formation + Delta-G solvation = -7.127081 kcal
Electronic energy + Delta-G solvation = -16505.129280 eV
Core-core repulsion = 13916.959315 eV
Total energy + Delta-G solvation = -2588.169965 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 233.116 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.70516 -39.75597 -37.11088 -34.51217 -32.81613 -30.50102 -29.93231 -28.17696
-26.67401 -26.37219 -22.94804 -22.09616 -21.44007 -18.59618 -18.39330 -17.37803
-16.72098 -16.56428 -16.29336 -16.23045 -15.31235 -15.20713 -14.37278 -14.00973
-13.88340 -13.61857 -13.43272 -13.22014 -12.96963 -12.55658 -12.46958 -12.39986
-11.97894 -11.91475 -11.84676 -11.65824 -11.18086 -10.48253 -9.98621 -9.05936
-8.48571 -8.13892 -6.33828 0.46169 0.57864 1.40673 1.43771 1.54787
2.39775 2.47205 2.83140 3.00162 3.43452 3.87310 4.08789 4.27099
4.35082 4.44851 4.45195 4.56044 4.58728 4.70710 4.72180 4.76713
4.77925 4.95376 5.13969 5.35596 5.40743 5.53500 5.56726 5.63464
5.73146 5.80523 6.05544 6.41503 6.59238 6.68949 6.98357 7.36806
8.91281
Molecular weight = 233.12amu
Principal moments of inertia in cm(-1)
A = 0.041386 B = 0.007525 C = 0.006684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 676.390481 B = 3720.101952 C = 4188.304366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.342 6.342
3 C 0.145 3.855
4 C -0.230 4.230
5 C -0.056 4.056
6 C -0.176 4.176
7 C 0.117 3.883
8 C -0.212 4.212
9 C -0.080 4.080
10 C 0.210 3.790
11 H 0.016 0.984
12 C -0.551 4.551
13 H 0.059 0.941
14 C 0.036 3.964
15 N -0.884 5.884
16 Si 0.952 3.048
17 H -0.268 1.268
18 H -0.274 1.274
19 H -0.279 1.279
20 N -0.492 5.492
21 C 0.073 3.927
22 H 0.067 0.933
23 H 0.115 0.885
24 H 0.067 0.933
25 H 0.162 0.838
26 H 0.165 0.835
27 H 0.126 0.874
28 H 0.058 0.942
29 H 0.062 0.938
30 H 0.264 0.736
31 H 0.048 0.952
32 H 0.077 0.923
33 H 0.006 0.994
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.095 1.058 -2.810 14.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.256 6.256
3 C 0.099 3.901
4 C -0.249 4.249
5 C -0.075 4.075
6 C -0.196 4.196
7 C 0.019 3.981
8 C -0.216 4.216
9 C -0.118 4.118
10 C 0.105 3.895
11 H 0.034 0.966
12 C -0.590 4.590
13 H 0.077 0.923
14 C -0.167 4.167
15 N -0.520 5.520
16 Si 0.777 3.223
17 H -0.192 1.192
18 H -0.200 1.200
19 H -0.204 1.204
20 N -0.208 5.208
21 C -0.072 4.072
22 H 0.086 0.914
23 H 0.134 0.866
24 H 0.085 0.915
25 H 0.179 0.821
26 H 0.183 0.817
27 H 0.144 0.856
28 H 0.077 0.923
29 H 0.081 0.919
30 H 0.073 0.927
31 H 0.066 0.934
32 H 0.095 0.905
33 H 0.025 0.975
Dipole moment (debyes) X Y Z Total
from point charges -13.564 1.361 -2.406 13.843
hybrid contribution 0.657 -0.811 -0.570 1.189
sum -12.907 0.550 -2.976 13.257
Atomic orbital electron populations
1.23346 0.76413 1.05365 1.02436 1.86066 1.23632 1.27189 1.88734
1.18518 0.89782 0.85449 0.96316 1.21358 1.00845 0.91038 1.11646
1.21026 0.92706 0.98371 0.95351 1.20670 0.94139 0.96288 1.08519
1.20267 0.90133 0.93505 0.94196 1.20654 0.92328 0.96984 1.11587
1.21469 0.93443 0.96480 1.00450 1.20044 0.92032 0.82470 0.94922
0.96600 1.21244 0.93310 1.13932 1.30506 0.92307 1.25691 1.01111
0.94560 0.95384 1.70255 1.25387 1.19543 1.36818 0.85607 0.79338
0.78732 0.78649 1.19225 1.19959 1.20424 1.60225 1.05501 1.29825
1.25236 1.21937 1.01873 0.97057 0.86370 0.91399 0.86640 0.91481
0.82059 0.81725 0.85646 0.92305 0.91921 0.92702 0.93379 0.90481
0.97492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.36 9.81 113.37 1.11 1.47 16
2 O -0.34 -11.18 10.47 -92.38 -0.97 -12.15 16
3 C 0.15 5.24 6.68 22.45 0.15 5.39 16
4 C -0.23 -6.51 9.05 22.40 0.20 -6.30 16
5 C -0.06 -1.59 10.01 22.19 0.22 -1.36 16
6 C -0.18 -6.41 10.07 22.49 0.23 -6.18 16
7 C 0.12 5.29 5.59 38.27 0.21 5.50 16
8 C -0.21 -9.33 6.18 -19.40 -0.12 -9.45 16
9 C -0.08 -3.83 6.47 30.67 0.20 -3.63 16
10 C 0.21 11.40 3.20 44.52 0.14 11.54 16
11 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16
12 C -0.55 -30.61 7.16 25.60 0.18 -30.43 16
13 H 0.06 3.23 7.66 -2.91 -0.02 3.21 16
14 C 0.04 1.96 3.62 84.65 0.31 2.27 16
15 N -0.88 -50.71 12.17 21.45 0.26 -50.45 16
16 Si 0.95 42.54 29.54 68.60 2.03 44.57 16
17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16
18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16
19 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
20 N -0.49 -25.34 4.92 -693.86 -3.41 -28.75 16
21 C 0.07 3.57 8.30 127.69 1.06 4.63 16
22 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16
23 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16
24 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16
25 H 0.16 3.19 6.31 -2.91 -0.02 3.17 16
26 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16
27 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16
28 H 0.06 2.84 7.81 -2.39 -0.02 2.82 16
29 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16
30 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16
31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16
32 H 0.08 4.08 4.78 -2.39 -0.01 4.07 16
33 H 0.01 0.32 8.11 -2.39 -0.02 0.30 16
Total: -1.00 -65.78 271.53 2.91 -62.87
By element:
Atomic # 1 Polarization: 9.36 SS G_CDS: 1.10 Total: 10.46 kcal
Atomic # 6 Polarization: -30.44 SS G_CDS: 3.90 Total: -26.55 kcal
Atomic # 7 Polarization: -76.05 SS G_CDS: -3.15 Total: -79.20 kcal
Atomic # 8 Polarization: -11.18 SS G_CDS: -0.97 Total: -12.15 kcal
Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal
Total: -65.78 2.91 -62.87 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261023465.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.744 kcal
(2) G-P(sol) polarization free energy of solvation -65.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.871 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.127 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds