Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00185 * 2 1 4 4 C 1.38862 * 120.01558 * 359.97438 * 3 2 1 5 5 C 1.38169 * 119.81341 * 180.02562 * 4 3 2 6 6 C 1.37975 * 120.32926 * 0.32220 * 5 4 3 7 7 C 1.39420 * 120.31709 * 359.58953 * 6 5 4 8 8 C 1.38355 * 120.01699 * 180.02562 * 3 2 1 9 9 C 1.51566 * 131.57457 * 359.64679 * 8 3 2 10 10 C 1.54598 * 102.81467 * 196.28249 * 9 8 3 11 11 H 1.09006 * 110.77837 * 92.69744 * 10 9 8 12 12 C 1.50695 * 110.78256 * 216.13735 * 10 9 8 13 13 H 1.07994 * 119.99531 * 354.65701 * 12 10 9 14 14 C 1.37878 * 120.00220 * 174.65322 * 12 10 9 15 15 N 1.31517 * 119.99596 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00133 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46990 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46889 * 120.00267 * 16 14 12 19 19 H 1.48496 * 109.47125 * 240.00495 * 16 14 12 20 20 N 1.40045 * 129.92005 * 179.88786 * 7 6 5 21 21 C 1.46898 * 110.99744 * 284.00283 * 20 7 6 22 22 H 1.09000 * 109.47113 * 59.99869 * 1 2 3 23 23 H 1.08996 * 109.47221 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46756 * 300.00158 * 1 2 3 25 25 H 1.07998 * 120.09057 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.83727 * 180.11677 * 5 4 3 27 27 H 1.08000 * 119.84360 * 179.75396 * 6 5 4 28 28 H 1.09000 * 110.74210 * 77.94947 * 9 8 3 29 29 H 1.09009 * 110.74325 * 314.61372 * 9 8 3 30 30 H 0.97008 * 119.99604 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.47668 * 59.87502 * 21 20 7 32 32 H 1.09003 * 109.46980 * 179.87371 * 21 20 7 33 33 H 1.08998 * 109.47175 * 299.86818 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2901 2.3756 -0.0005 5 6 1.9218 3.6045 -0.0011 6 6 3.2994 3.6797 -0.0078 7 6 4.0678 2.5164 -0.0054 8 6 3.4277 1.2836 -0.0005 9 6 4.4917 0.2042 0.0058 10 6 5.7629 0.9784 0.4238 11 1 5.9033 0.9370 1.5040 12 6 6.9748 0.4443 -0.2953 13 1 6.8875 -0.4278 -0.9261 14 6 8.1950 1.0692 -0.1478 15 7 8.3013 2.1311 0.6209 16 14 9.6974 0.4067 -1.0385 17 1 9.3147 -0.7878 -1.8335 18 1 10.2363 1.4522 -1.9450 19 1 10.7351 0.0295 -0.0456 20 7 5.4593 2.3584 -0.0131 21 6 6.0114 2.6206 -1.3489 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2115 2.3212 -0.0014 26 1 1.3342 4.5107 0.0004 27 1 3.7850 4.6444 -0.0122 28 1 4.6111 -0.2260 -0.9885 29 1 4.2529 -0.5690 0.7361 30 1 9.1598 2.5705 0.7249 31 1 5.7721 3.6414 -1.6471 32 1 7.0937 2.4930 -1.3261 33 1 5.5783 1.9219 -2.0647 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023465.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = -7.127081 kcal Electronic energy + Delta-G solvation = -16505.129280 eV Core-core repulsion = 13916.959315 eV Total energy + Delta-G solvation = -2588.169965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70516 -39.75597 -37.11088 -34.51217 -32.81613 -30.50102 -29.93231 -28.17696 -26.67401 -26.37219 -22.94804 -22.09616 -21.44007 -18.59618 -18.39330 -17.37803 -16.72098 -16.56428 -16.29336 -16.23045 -15.31235 -15.20713 -14.37278 -14.00973 -13.88340 -13.61857 -13.43272 -13.22014 -12.96963 -12.55658 -12.46958 -12.39986 -11.97894 -11.91475 -11.84676 -11.65824 -11.18086 -10.48253 -9.98621 -9.05936 -8.48571 -8.13892 -6.33828 0.46169 0.57864 1.40673 1.43771 1.54787 2.39775 2.47205 2.83140 3.00162 3.43452 3.87310 4.08789 4.27099 4.35082 4.44851 4.45195 4.56044 4.58728 4.70710 4.72180 4.76713 4.77925 4.95376 5.13969 5.35596 5.40743 5.53500 5.56726 5.63464 5.73146 5.80523 6.05544 6.41503 6.59238 6.68949 6.98357 7.36806 8.91281 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.041386 B = 0.007525 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.390481 B = 3720.101952 C = 4188.304366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.145 3.855 4 C -0.230 4.230 5 C -0.056 4.056 6 C -0.176 4.176 7 C 0.117 3.883 8 C -0.212 4.212 9 C -0.080 4.080 10 C 0.210 3.790 11 H 0.016 0.984 12 C -0.551 4.551 13 H 0.059 0.941 14 C 0.036 3.964 15 N -0.884 5.884 16 Si 0.952 3.048 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.279 1.279 20 N -0.492 5.492 21 C 0.073 3.927 22 H 0.067 0.933 23 H 0.115 0.885 24 H 0.067 0.933 25 H 0.162 0.838 26 H 0.165 0.835 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 1.058 -2.810 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.099 3.901 4 C -0.249 4.249 5 C -0.075 4.075 6 C -0.196 4.196 7 C 0.019 3.981 8 C -0.216 4.216 9 C -0.118 4.118 10 C 0.105 3.895 11 H 0.034 0.966 12 C -0.590 4.590 13 H 0.077 0.923 14 C -0.167 4.167 15 N -0.520 5.520 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.204 1.204 20 N -0.208 5.208 21 C -0.072 4.072 22 H 0.086 0.914 23 H 0.134 0.866 24 H 0.085 0.915 25 H 0.179 0.821 26 H 0.183 0.817 27 H 0.144 0.856 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -13.564 1.361 -2.406 13.843 hybrid contribution 0.657 -0.811 -0.570 1.189 sum -12.907 0.550 -2.976 13.257 Atomic orbital electron populations 1.23346 0.76413 1.05365 1.02436 1.86066 1.23632 1.27189 1.88734 1.18518 0.89782 0.85449 0.96316 1.21358 1.00845 0.91038 1.11646 1.21026 0.92706 0.98371 0.95351 1.20670 0.94139 0.96288 1.08519 1.20267 0.90133 0.93505 0.94196 1.20654 0.92328 0.96984 1.11587 1.21469 0.93443 0.96480 1.00450 1.20044 0.92032 0.82470 0.94922 0.96600 1.21244 0.93310 1.13932 1.30506 0.92307 1.25691 1.01111 0.94560 0.95384 1.70255 1.25387 1.19543 1.36818 0.85607 0.79338 0.78732 0.78649 1.19225 1.19959 1.20424 1.60225 1.05501 1.29825 1.25236 1.21937 1.01873 0.97057 0.86370 0.91399 0.86640 0.91481 0.82059 0.81725 0.85646 0.92305 0.91921 0.92702 0.93379 0.90481 0.97492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.18 10.47 -92.38 -0.97 -12.15 16 3 C 0.15 5.24 6.68 22.45 0.15 5.39 16 4 C -0.23 -6.51 9.05 22.40 0.20 -6.30 16 5 C -0.06 -1.59 10.01 22.19 0.22 -1.36 16 6 C -0.18 -6.41 10.07 22.49 0.23 -6.18 16 7 C 0.12 5.29 5.59 38.27 0.21 5.50 16 8 C -0.21 -9.33 6.18 -19.40 -0.12 -9.45 16 9 C -0.08 -3.83 6.47 30.67 0.20 -3.63 16 10 C 0.21 11.40 3.20 44.52 0.14 11.54 16 11 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 12 C -0.55 -30.61 7.16 25.60 0.18 -30.43 16 13 H 0.06 3.23 7.66 -2.91 -0.02 3.21 16 14 C 0.04 1.96 3.62 84.65 0.31 2.27 16 15 N -0.88 -50.71 12.17 21.45 0.26 -50.45 16 16 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 20 N -0.49 -25.34 4.92 -693.86 -3.41 -28.75 16 21 C 0.07 3.57 8.30 127.69 1.06 4.63 16 22 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 23 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 25 H 0.16 3.19 6.31 -2.91 -0.02 3.17 16 26 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 27 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.06 2.84 7.81 -2.39 -0.02 2.82 16 29 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.08 4.08 4.78 -2.39 -0.01 4.07 16 33 H 0.01 0.32 8.11 -2.39 -0.02 0.30 16 Total: -1.00 -65.78 271.53 2.91 -62.87 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.10 Total: 10.46 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.90 Total: -26.55 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -3.15 Total: -79.20 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.97 Total: -12.15 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -65.78 2.91 -62.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023465.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.744 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds