Wall clock time and date at job start Mon Mar 30 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00344 * 2 1 4 4 H 1.48497 * 109.46991 * 269.99905 * 3 2 1 5 5 H 1.48509 * 109.47049 * 29.99148 * 3 2 1 6 6 H 1.48494 * 109.47448 * 149.99427 * 3 2 1 7 7 C 1.37880 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99863 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.71468 * 300.37298 * 9 7 2 11 11 C 1.53305 * 109.61190 * 60.73795 * 9 7 2 12 12 C 1.53140 * 109.59157 * 170.04319 * 11 9 7 13 13 C 1.53460 * 109.30584 * 290.57526 * 12 11 9 14 14 C 1.50806 * 108.12849 * 48.72920 * 13 12 11 15 15 N 1.29838 * 128.52418 * 164.04553 * 14 13 12 16 16 N 1.28913 * 109.47781 * 179.85501 * 15 14 13 17 17 C 1.30840 * 109.73907 * 0.42868 * 16 15 14 18 18 C 1.50697 * 126.46350 * 179.79482 * 17 16 15 19 19 C 1.53002 * 117.49992 * 350.94281 * 18 17 16 20 20 C 1.53000 * 117.50034 * 59.60054 * 18 17 16 21 21 N 1.34695 * 107.07132 * 359.53361 * 17 16 15 22 22 H 0.96993 * 119.99863 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.44013 * 50.01098 * 11 9 7 24 24 H 1.08998 * 109.45627 * 290.08906 * 11 9 7 25 25 H 1.08997 * 109.50026 * 170.62696 * 12 11 9 26 26 H 1.09001 * 109.49768 * 50.52976 * 12 11 9 27 27 H 1.09005 * 109.73075 * 289.07201 * 13 12 11 28 28 H 1.08999 * 109.77149 * 168.40927 * 13 12 11 29 29 H 1.09002 * 115.54932 * 205.27118 * 18 17 16 30 30 H 1.09000 * 117.49996 * 215.00670 * 19 18 17 31 31 H 1.08999 * 117.49664 * 0.02562 * 19 18 17 32 32 H 1.09008 * 117.49673 * 359.97438 * 20 18 17 33 33 H 1.08999 * 117.49942 * 144.97208 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6175 -2.5580 0.8856 11 6 0.3829 -2.5921 -1.2596 12 6 -0.1869 -4.0078 -1.3873 13 6 0.9492 -4.9838 -1.7216 14 6 2.0838 -4.7298 -0.7612 15 7 3.1043 -5.4876 -0.4964 16 7 3.8520 -4.9108 0.3810 17 6 3.3295 -3.7597 0.7187 18 6 3.8902 -2.7801 1.7172 19 6 5.0766 -3.2389 2.5674 20 6 5.2870 -2.2174 1.4471 21 7 2.1991 -3.6129 0.0012 22 1 -0.4849 0.8400 -0.0004 23 1 0.9900 -2.3647 -2.1359 24 1 -0.4359 -1.8761 -1.1900 25 1 -0.9314 -4.0299 -2.1831 26 1 -0.6517 -4.2993 -0.4455 27 1 1.2884 -4.8174 -2.7441 28 1 0.5978 -6.0098 -1.6129 29 1 3.1623 -2.1172 2.1850 30 1 5.1292 -2.8779 3.5945 31 1 5.4519 -4.2492 2.4042 32 1 5.8007 -2.5561 0.5472 33 1 5.4780 -1.1841 1.7367 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:33 Heat of formation + Delta-G solvation = 85.346418 kcal Electronic energy + Delta-G solvation = -16820.707316 eV Core-core repulsion = 14268.840054 eV Total energy + Delta-G solvation = -2551.867262 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.39599 -36.75260 -36.46919 -33.30454 -32.32575 -29.69383 -28.26763 -25.75476 -23.22322 -22.68079 -22.02643 -21.73610 -19.41295 -18.63520 -16.88285 -16.29827 -15.19959 -14.98168 -14.38452 -14.17107 -13.77273 -13.34972 -13.21764 -12.85027 -11.90037 -11.60372 -11.44735 -11.18043 -11.14237 -10.98657 -10.67697 -10.48997 -10.35047 -10.14431 -10.12573 -10.01044 -9.73763 -9.47793 -8.91000 -8.65544 -8.03629 -6.41978 -4.50490 2.69536 3.10691 3.18642 3.21256 3.55221 3.59576 4.14812 4.45541 4.83931 4.90285 5.14313 5.32639 5.37388 5.47192 5.50454 5.65117 5.75989 6.03096 6.05993 6.21262 6.23746 6.27498 6.34513 6.45769 6.56768 6.57832 6.73385 6.98623 7.01600 7.15414 7.41089 7.57252 7.79083 7.93090 8.55881 9.17416 9.58030 10.64756 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.013257 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.332528 B = 2111.637335 C = 3337.278105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.259 3.741 10 H 0.054 0.946 11 C -0.121 4.121 12 C -0.130 4.130 13 C -0.027 4.027 14 C 0.157 3.843 15 N -0.313 5.313 16 N -0.325 5.325 17 C 0.217 3.783 18 C -0.058 4.058 19 C -0.165 4.165 20 C -0.159 4.159 21 N -0.433 5.433 22 H 0.268 0.732 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -2.206 0.579 2.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.093 0.907 9 C 0.159 3.841 10 H 0.071 0.929 11 C -0.159 4.159 12 C -0.168 4.168 13 C -0.066 4.066 14 C -0.112 4.112 15 N -0.155 5.155 16 N -0.167 5.167 17 C -0.051 4.051 18 C -0.079 4.079 19 C -0.203 4.203 20 C -0.197 4.197 21 N -0.119 5.119 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.934 -3.203 0.542 3.781 hybrid contribution -0.601 2.075 -0.079 2.162 sum 1.333 -1.128 0.464 1.807 Atomic orbital electron populations 1.69859 1.05993 1.27678 1.48591 1.24866 0.94961 0.99406 0.93915 0.86376 0.79889 0.82128 0.78540 1.20336 1.20873 1.19346 1.21255 0.93924 0.88817 1.53588 0.90705 1.19489 0.86072 0.82140 0.96401 0.92873 1.21996 1.01238 0.94756 0.97933 1.21829 0.96809 0.96598 1.01573 1.20107 0.90284 1.00485 0.95743 1.24464 1.00169 0.86797 0.99728 1.73837 1.02976 1.25674 1.13022 1.74220 1.24164 1.05675 1.12686 1.23222 0.87526 0.96077 0.98226 1.20042 0.91664 0.98356 0.97830 1.23018 1.01263 1.00374 0.95667 1.22927 0.97807 0.98602 1.00398 1.46493 1.19664 1.17202 1.28535 0.92162 0.92770 0.87347 0.91349 0.92147 0.89867 0.89740 0.85085 0.88631 0.87908 0.88878 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.22 11.51 55.43 0.64 -21.59 16 2 C 0.07 1.79 5.31 -17.82 -0.09 1.69 16 3 Si 0.90 19.41 29.54 -169.99 -5.02 14.39 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -13.19 7.28 -34.44 -0.25 -13.44 16 8 H 0.07 1.87 6.21 -52.48 -0.33 1.55 16 9 C 0.26 5.99 2.95 -69.06 -0.20 5.79 16 10 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 11 C -0.12 -2.53 4.87 -26.50 -0.13 -2.66 16 12 C -0.13 -2.21 5.96 -26.42 -0.16 -2.37 16 13 C -0.03 -0.45 6.34 -27.59 -0.17 -0.63 16 14 C 0.16 3.38 7.75 -155.30 -1.20 2.18 16 15 N -0.31 -7.24 12.21 32.76 0.40 -6.84 16 16 N -0.32 -7.54 11.87 32.70 0.39 -7.15 16 17 C 0.22 4.84 7.20 -155.45 -1.12 3.73 16 18 C -0.06 -1.12 4.32 -91.77 -0.40 -1.52 16 19 C -0.17 -2.60 10.15 -26.69 -0.27 -2.87 16 20 C -0.16 -2.67 10.12 -26.70 -0.27 -2.94 16 21 N -0.43 -9.79 2.95 -105.04 -0.31 -10.10 16 22 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 23 H 0.05 1.18 8.09 -51.93 -0.42 0.76 16 24 H 0.11 2.44 6.47 -51.93 -0.34 2.11 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.13 2.59 7.49 -51.93 -0.39 2.20 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.68 7.93 -51.93 -0.41 1.27 16 32 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 33 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -27.45 271.26 -8.49 -35.94 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.40 Total: 4.32 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -4.27 Total: -13.05 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 1.12 Total: -45.69 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.45 -8.49 -35.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.283 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds