Wall clock time and date at job start Mon Mar 30 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00344 * 2 1 4 4 H 1.48497 * 109.46991 * 269.99905 * 3 2 1 5 5 H 1.48509 * 109.47049 * 29.99148 * 3 2 1 6 6 H 1.48494 * 109.47448 * 149.99427 * 3 2 1 7 7 C 1.37880 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99863 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.71468 * 300.37298 * 9 7 2 11 11 C 1.53305 * 109.61190 * 60.73795 * 9 7 2 12 12 C 1.53140 * 109.59157 * 170.04319 * 11 9 7 13 13 C 1.53460 * 109.30584 * 290.57526 * 12 11 9 14 14 C 1.50806 * 108.12849 * 48.72920 * 13 12 11 15 15 N 1.29838 * 128.52418 * 164.04553 * 14 13 12 16 16 N 1.28913 * 109.47781 * 179.85501 * 15 14 13 17 17 C 1.30840 * 109.73907 * 0.42868 * 16 15 14 18 18 C 1.50697 * 126.46350 * 179.79482 * 17 16 15 19 19 C 1.53002 * 117.49992 * 350.94281 * 18 17 16 20 20 C 1.53000 * 117.50034 * 59.60054 * 18 17 16 21 21 N 1.34695 * 107.07132 * 359.53361 * 17 16 15 22 22 H 0.96993 * 119.99863 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.44013 * 50.01098 * 11 9 7 24 24 H 1.08998 * 109.45627 * 290.08906 * 11 9 7 25 25 H 1.08997 * 109.50026 * 170.62696 * 12 11 9 26 26 H 1.09001 * 109.49768 * 50.52976 * 12 11 9 27 27 H 1.09005 * 109.73075 * 289.07201 * 13 12 11 28 28 H 1.08999 * 109.77149 * 168.40927 * 13 12 11 29 29 H 1.09002 * 115.54932 * 205.27118 * 18 17 16 30 30 H 1.09000 * 117.49996 * 215.00670 * 19 18 17 31 31 H 1.08999 * 117.49664 * 0.02562 * 19 18 17 32 32 H 1.09008 * 117.49673 * 359.97438 * 20 18 17 33 33 H 1.08999 * 117.49942 * 144.97208 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6175 -2.5580 0.8856 11 6 0.3829 -2.5921 -1.2596 12 6 -0.1869 -4.0078 -1.3873 13 6 0.9492 -4.9838 -1.7216 14 6 2.0838 -4.7298 -0.7612 15 7 3.1043 -5.4876 -0.4964 16 7 3.8520 -4.9108 0.3810 17 6 3.3295 -3.7597 0.7187 18 6 3.8902 -2.7801 1.7172 19 6 5.0766 -3.2389 2.5674 20 6 5.2870 -2.2174 1.4471 21 7 2.1991 -3.6129 0.0012 22 1 -0.4849 0.8400 -0.0004 23 1 0.9900 -2.3647 -2.1359 24 1 -0.4359 -1.8761 -1.1900 25 1 -0.9314 -4.0299 -2.1831 26 1 -0.6517 -4.2993 -0.4455 27 1 1.2884 -4.8174 -2.7441 28 1 0.5978 -6.0098 -1.6129 29 1 3.1623 -2.1172 2.1850 30 1 5.1292 -2.8779 3.5945 31 1 5.4519 -4.2492 2.4042 32 1 5.8007 -2.5561 0.5472 33 1 5.4780 -1.1841 1.7367 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:33 Heat of formation + Delta-G solvation = 71.926565 kcal Electronic energy + Delta-G solvation = -16821.289245 eV Core-core repulsion = 14268.840054 eV Total energy + Delta-G solvation = -2552.449191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.09520 -38.28916 -38.01851 -34.98673 -34.06273 -31.38784 -29.96467 -27.48259 -24.81829 -24.36390 -23.55366 -23.16420 -21.01751 -20.25281 -18.73263 -17.95728 -16.92032 -16.56652 -15.99249 -15.75464 -15.22462 -14.94932 -14.71167 -14.54512 -13.49686 -13.18639 -13.11602 -12.87372 -12.73659 -12.40881 -12.33248 -12.12373 -11.94153 -11.75836 -11.61644 -11.47380 -11.43904 -11.17950 -10.70437 -10.49944 -9.67784 -8.29366 -6.43287 1.03081 1.39966 1.43568 1.51909 1.86307 1.93093 2.36432 3.01684 3.04438 3.32132 3.62011 3.87269 3.92818 4.06781 4.11770 4.20712 4.23653 4.56221 4.66196 4.73005 4.76605 4.87231 4.93320 4.95569 5.07487 5.19878 5.28809 5.33553 5.35114 5.44996 5.60955 5.75075 5.96121 6.20758 6.65292 7.26719 7.85268 8.76724 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.013257 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.332528 B = 2111.637335 C = 3337.278105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.036 3.964 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.263 3.737 10 H 0.028 0.972 11 C -0.113 4.113 12 C -0.119 4.119 13 C -0.024 4.024 14 C 0.154 3.846 15 N -0.337 5.337 16 N -0.344 5.344 17 C 0.210 3.790 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.151 4.151 21 N -0.446 5.446 22 H 0.270 0.730 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -2.098 0.442 2.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.162 3.838 10 H 0.045 0.955 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.064 4.064 14 C -0.115 4.115 15 N -0.178 5.178 16 N -0.186 5.186 17 C -0.058 4.058 18 C -0.111 4.111 19 C -0.174 4.174 20 C -0.189 4.189 21 N -0.133 5.133 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.110 0.890 25 H 0.122 0.878 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.169 -3.121 0.406 3.822 hybrid contribution -0.665 2.019 -0.018 2.125 sum 1.504 -1.102 0.388 1.905 Atomic orbital electron populations 1.69943 1.06903 1.28313 1.49032 1.25483 0.95639 1.01851 0.93614 0.85548 0.79075 0.78864 0.78311 1.20484 1.20532 1.18708 1.21360 0.93624 0.89784 1.53745 0.91596 1.19329 0.86089 0.82003 0.96360 0.95457 1.21823 1.00059 0.97156 0.96124 1.21758 0.97358 0.93725 1.02874 1.20357 0.88621 1.02002 0.95388 1.25346 1.00643 0.85950 0.99570 1.73774 1.03820 1.26398 1.13776 1.74151 1.24822 1.06194 1.13418 1.23835 0.87422 0.96256 0.98313 1.20132 0.92662 0.99150 0.99161 1.23106 0.97531 0.99883 0.96858 1.22981 0.95357 0.99967 1.00626 1.46589 1.19950 1.17522 1.29262 0.92052 0.93952 0.89036 0.87800 0.92364 0.88131 0.86851 0.86196 0.85350 0.88485 0.89895 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.66 11.51 21.45 0.25 -45.41 16 2 C 0.04 1.78 5.31 84.66 0.45 2.23 16 3 Si 0.96 39.38 29.54 68.60 2.03 41.41 16 4 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.55 -27.10 7.28 25.60 0.19 -26.92 16 8 H 0.07 3.33 6.21 -2.91 -0.02 3.31 16 9 C 0.26 12.32 2.95 44.39 0.13 12.45 16 10 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 11 C -0.11 -4.71 4.87 30.74 0.15 -4.56 16 12 C -0.12 -3.82 5.96 30.80 0.18 -3.64 16 13 C -0.02 -0.78 6.34 30.04 0.19 -0.59 16 14 C 0.15 6.52 7.75 138.14 1.07 7.59 16 15 N -0.34 -15.47 12.21 -50.27 -0.61 -16.08 16 16 N -0.34 -16.01 11.87 -50.46 -0.60 -16.61 16 17 C 0.21 9.43 7.20 138.14 0.99 10.42 16 18 C -0.09 -3.45 4.32 -11.54 -0.05 -3.50 16 19 C -0.14 -4.05 10.15 30.62 0.31 -3.74 16 20 C -0.15 -4.88 10.12 30.62 0.31 -4.57 16 21 N -0.45 -20.34 2.95 -486.24 -1.44 -21.77 16 22 H 0.27 13.00 8.31 -92.71 -0.77 12.22 16 23 H 0.04 1.83 8.09 -2.39 -0.02 1.81 16 24 H 0.09 4.13 6.47 -2.39 -0.02 4.12 16 25 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 27 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 28 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.12 4.80 7.49 -2.39 -0.02 4.78 16 30 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.10 3.03 7.93 -2.39 -0.02 3.01 16 32 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 33 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -59.07 271.26 4.66 -54.41 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.11 Total: 18.87 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 3.93 Total: -14.82 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -2.40 Total: -99.87 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -59.07 4.66 -54.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.340 kcal (2) G-P(sol) polarization free energy of solvation -59.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds