Wall clock time and date at job start Mon Mar 30 2020 03:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.66586 * 2 1 4 4 C 1.54704 * 110.75270 * 236.77508 * 2 1 3 5 5 C 1.51648 * 101.94157 * 216.26635 * 4 2 1 6 6 C 1.37738 * 132.16684 * 195.60523 * 5 4 2 7 7 C 1.38352 * 119.97939 * 179.10792 * 6 5 4 8 8 C 1.38284 * 119.76487 * 359.73463 * 7 6 5 9 9 C 1.37938 * 120.34890 * 0.72770 * 8 7 6 10 10 C 1.50704 * 119.88052 * 179.72402 * 9 8 7 11 11 H 1.08998 * 109.47058 * 144.73181 * 10 9 8 12 12 N 1.46897 * 109.47165 * 24.72634 * 10 9 8 13 13 C 1.50705 * 109.47221 * 264.72794 * 10 9 8 14 14 H 1.08007 * 119.99693 * 5.66286 * 13 10 9 15 15 C 1.37870 * 119.99918 * 185.65553 * 13 10 9 16 16 N 1.31511 * 120.00030 * 195.02125 * 15 13 10 17 17 Si 1.86795 * 120.00182 * 15.02669 * 15 13 10 18 18 H 1.48499 * 109.47387 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47356 * 59.99836 * 17 15 13 20 20 H 1.48504 * 109.47318 * 299.99527 * 17 15 13 21 21 C 1.38884 * 107.04419 * 15.14656 * 5 4 2 22 22 O 1.36136 * 111.22340 * 1.42775 * 21 5 4 23 23 H 1.09003 * 109.46940 * 183.21964 * 1 2 3 24 24 H 1.08993 * 109.47735 * 303.22346 * 1 2 3 25 25 H 1.09003 * 109.47074 * 63.22622 * 1 2 3 26 26 H 1.08996 * 110.93116 * 98.10523 * 4 2 1 27 27 H 1.09000 * 110.96603 * 334.44619 * 4 2 1 28 28 H 1.08001 * 120.01169 * 359.13586 * 6 5 4 29 29 H 1.07998 * 120.11505 * 180.02562 * 7 6 5 30 30 H 1.07995 * 119.82838 * 180.45371 * 8 7 6 31 31 H 1.00893 * 111.00157 * 173.52329 * 12 10 9 32 32 H 1.00900 * 111.00088 * 297.48433 * 12 10 9 33 33 H 0.97001 * 120.00474 * 354.38497 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0782 -0.7927 -1.2102 5 6 3.3080 -1.4554 -0.6202 6 6 4.3972 -2.0667 -1.2007 7 6 5.4058 -2.5820 -0.4060 8 6 5.3177 -2.4756 0.9699 9 6 4.2233 -1.8722 1.5537 10 6 4.1353 -1.7675 3.0545 11 1 3.6524 -0.8286 3.3255 12 7 5.4870 -1.8065 3.6282 13 6 3.3280 -2.9210 3.5921 14 1 2.9971 -3.7049 2.9269 15 6 3.0119 -2.9755 4.9330 16 7 2.5753 -4.0982 5.4605 17 14 3.2038 -1.4546 6.0004 18 1 2.8005 -1.7735 7.3935 19 1 2.3412 -0.3672 5.4725 20 1 4.6218 -1.0138 5.9838 21 6 3.2018 -1.3543 0.7609 22 8 2.0431 -0.7380 1.1223 23 1 -0.3633 -1.0261 0.0577 24 1 -0.3634 0.5630 0.8596 25 1 -0.3633 0.4629 -0.9175 26 1 2.3504 -0.1212 -2.0245 27 1 1.3577 -1.5381 -1.5469 28 1 4.4642 -2.1434 -2.2759 29 1 6.2610 -3.0614 -0.8589 30 1 6.1079 -2.8709 1.5909 31 1 5.4634 -1.6325 4.6217 32 1 5.9407 -2.6847 3.4255 33 1 2.3979 -4.8643 4.8925 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:28 Heat of formation + Delta-G solvation = -10.458400 kcal Electronic energy + Delta-G solvation = -16436.846780 eV Core-core repulsion = 13848.532359 eV Total energy + Delta-G solvation = -2588.314422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66305 -37.30474 -34.86254 -32.61571 -31.74274 -30.42893 -29.15493 -26.38940 -25.55393 -22.55665 -21.62606 -21.26157 -19.32714 -17.66827 -17.08792 -16.39749 -15.48174 -14.81056 -14.65094 -13.75113 -13.44863 -13.17654 -12.99307 -12.70650 -12.54760 -12.29282 -12.26237 -11.93975 -11.71453 -11.52595 -11.05006 -10.81479 -10.48448 -10.28549 -10.07417 -9.89290 -9.23552 -8.46229 -8.12134 -7.67266 -7.38252 -6.41943 -4.16493 1.88628 2.02069 3.29438 3.41611 3.56612 3.72695 4.30089 4.40430 4.72156 4.78989 5.10043 5.21077 5.28951 5.39411 5.55311 5.57799 5.68212 5.74353 5.84048 5.97324 6.13682 6.14269 6.25049 6.29852 6.54317 6.81543 6.90251 7.07781 7.24055 7.37999 7.79286 7.88999 8.26570 8.42621 8.53955 8.88020 9.54930 10.87303 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.009915 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.956594 B = 2823.417088 C = 3540.854047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.080 0.920 4 C -0.100 4.100 5 C -0.186 4.186 6 C -0.097 4.097 7 C -0.154 4.154 8 C -0.080 4.080 9 C -0.038 4.038 10 C 0.214 3.786 11 H 0.046 0.954 12 N -0.858 5.858 13 C -0.615 4.615 14 H 0.055 0.945 15 C 0.029 3.971 16 N -0.902 5.902 17 Si 1.049 2.951 18 H -0.284 1.284 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.107 3.893 22 O -0.288 6.288 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.330 0.670 32 H 0.326 0.674 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 7.231 -12.084 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.097 0.903 4 C -0.137 4.137 5 C -0.187 4.187 6 C -0.115 4.115 7 C -0.172 4.172 8 C -0.099 4.099 9 C -0.039 4.039 10 C 0.105 3.895 11 H 0.063 0.937 12 N -0.389 5.389 13 C -0.654 4.654 14 H 0.073 0.927 15 C -0.176 4.176 16 N -0.537 5.537 17 Si 0.877 3.123 18 H -0.210 1.210 19 H -0.207 1.207 20 H -0.201 1.201 21 C 0.061 3.939 22 O -0.203 6.203 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.565 8.411 -10.777 13.683 hybrid contribution -0.399 -1.479 -1.275 1.993 sum 0.166 6.932 -12.052 13.905 Atomic orbital electron populations 1.21845 0.92621 1.03477 1.02505 1.23299 0.95497 0.95398 0.84318 0.90262 1.21767 0.95005 0.98904 0.98052 1.20646 0.97767 1.06336 0.93948 1.20026 0.93211 0.99394 0.98856 1.20917 0.99331 1.03112 0.93849 1.20694 0.97281 0.97889 0.94013 1.19422 0.90471 0.97207 0.96816 1.18174 0.87483 0.97265 0.86618 0.93675 1.59830 1.21529 1.39135 1.18450 1.22566 1.38488 1.08272 0.96104 0.92707 1.25830 0.93905 1.01602 0.96306 1.70843 1.43086 1.01777 1.37947 0.83956 0.76995 0.75143 0.76202 1.21009 1.20670 1.20125 1.19306 0.87016 0.95587 0.91967 1.86981 1.34461 1.62450 1.36359 0.91432 0.91402 0.90859 0.89956 0.89773 0.86941 0.86404 0.85341 0.85499 0.86239 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.59 37.16 0.36 -1.46 16 2 C 0.07 1.09 4.25 -25.83 -0.11 0.98 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.10 -1.42 6.65 -26.52 -0.18 -1.59 16 5 C -0.19 -3.35 6.27 -104.10 -0.65 -4.00 16 6 C -0.10 -1.59 10.03 -39.72 -0.40 -1.99 16 7 C -0.15 -2.61 10.07 -39.52 -0.40 -3.00 16 8 C -0.08 -1.60 9.25 -39.67 -0.37 -1.97 16 9 C -0.04 -0.87 5.02 -104.34 -0.52 -1.39 16 10 C 0.21 5.36 2.44 -70.01 -0.17 5.19 16 11 H 0.05 1.19 6.82 -51.93 -0.35 0.84 16 12 N -0.86 -19.33 8.73 -6.65 -0.06 -19.39 16 13 C -0.61 -17.64 9.00 -34.44 -0.31 -17.95 16 14 H 0.05 1.74 7.99 -52.48 -0.42 1.32 16 15 C 0.03 0.85 5.43 -17.82 -0.10 0.75 16 16 N -0.90 -27.83 13.69 55.43 0.76 -27.08 16 17 Si 1.05 25.40 26.48 -169.99 -4.50 20.90 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.01 5.54 56.52 0.31 -5.69 16 21 C 0.11 2.31 6.74 -38.95 -0.26 2.05 16 22 O -0.29 -6.15 10.77 -20.17 -0.22 -6.36 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.13 2.41 6.32 -52.49 -0.33 2.08 16 31 H 0.33 7.47 5.53 -39.30 -0.22 7.25 16 32 H 0.33 7.00 7.31 -39.29 -0.29 6.71 16 33 H 0.27 8.30 8.73 -40.82 -0.36 7.95 16 LS Contribution 271.61 15.07 4.09 4.09 Total: -1.00 -32.05 271.61 -7.25 -39.30 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.22 Total: 12.92 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -3.11 Total: -24.39 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.70 Total: -46.46 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.22 Total: -6.36 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.50 Total: 20.90 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.05 -7.25 -39.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.844 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds