Wall clock time and date at job start Mon Mar 30 2020 03:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.66586 * 2 1 4 4 C 1.54704 * 110.75270 * 236.77508 * 2 1 3 5 5 C 1.51648 * 101.94157 * 216.26635 * 4 2 1 6 6 C 1.37738 * 132.16684 * 195.60523 * 5 4 2 7 7 C 1.38352 * 119.97939 * 179.10792 * 6 5 4 8 8 C 1.38284 * 119.76487 * 359.73463 * 7 6 5 9 9 C 1.37938 * 120.34890 * 0.72770 * 8 7 6 10 10 C 1.50704 * 119.88052 * 179.72402 * 9 8 7 11 11 H 1.08998 * 109.47058 * 144.73181 * 10 9 8 12 12 N 1.46897 * 109.47165 * 24.72634 * 10 9 8 13 13 C 1.50705 * 109.47221 * 264.72794 * 10 9 8 14 14 H 1.08007 * 119.99693 * 5.66286 * 13 10 9 15 15 C 1.37870 * 119.99918 * 185.65553 * 13 10 9 16 16 N 1.31511 * 120.00030 * 195.02125 * 15 13 10 17 17 Si 1.86795 * 120.00182 * 15.02669 * 15 13 10 18 18 H 1.48499 * 109.47387 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47356 * 59.99836 * 17 15 13 20 20 H 1.48504 * 109.47318 * 299.99527 * 17 15 13 21 21 C 1.38884 * 107.04419 * 15.14656 * 5 4 2 22 22 O 1.36136 * 111.22340 * 1.42775 * 21 5 4 23 23 H 1.09003 * 109.46940 * 183.21964 * 1 2 3 24 24 H 1.08993 * 109.47735 * 303.22346 * 1 2 3 25 25 H 1.09003 * 109.47074 * 63.22622 * 1 2 3 26 26 H 1.08996 * 110.93116 * 98.10523 * 4 2 1 27 27 H 1.09000 * 110.96603 * 334.44619 * 4 2 1 28 28 H 1.08001 * 120.01169 * 359.13586 * 6 5 4 29 29 H 1.07998 * 120.11505 * 180.02562 * 7 6 5 30 30 H 1.07995 * 119.82838 * 180.45371 * 8 7 6 31 31 H 1.00893 * 111.00157 * 173.52329 * 12 10 9 32 32 H 1.00900 * 111.00088 * 297.48433 * 12 10 9 33 33 H 0.97001 * 120.00474 * 354.38497 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0782 -0.7927 -1.2102 5 6 3.3080 -1.4554 -0.6202 6 6 4.3972 -2.0667 -1.2007 7 6 5.4058 -2.5820 -0.4060 8 6 5.3177 -2.4756 0.9699 9 6 4.2233 -1.8722 1.5537 10 6 4.1353 -1.7675 3.0545 11 1 3.6524 -0.8286 3.3255 12 7 5.4870 -1.8065 3.6282 13 6 3.3280 -2.9210 3.5921 14 1 2.9971 -3.7049 2.9269 15 6 3.0119 -2.9755 4.9330 16 7 2.5753 -4.0982 5.4605 17 14 3.2038 -1.4546 6.0004 18 1 2.8005 -1.7735 7.3935 19 1 2.3412 -0.3672 5.4725 20 1 4.6218 -1.0138 5.9838 21 6 3.2018 -1.3543 0.7609 22 8 2.0431 -0.7380 1.1223 23 1 -0.3633 -1.0261 0.0577 24 1 -0.3634 0.5630 0.8596 25 1 -0.3633 0.4629 -0.9175 26 1 2.3504 -0.1212 -2.0245 27 1 1.3577 -1.5381 -1.5469 28 1 4.4642 -2.1434 -2.2759 29 1 6.2610 -3.0614 -0.8589 30 1 6.1079 -2.8709 1.5909 31 1 5.4634 -1.6325 4.6217 32 1 5.9407 -2.6847 3.4255 33 1 2.3979 -4.8643 4.8925 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261085469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:28 Heat of formation + Delta-G solvation = -33.552920 kcal Electronic energy + Delta-G solvation = -16437.848234 eV Core-core repulsion = 13848.532359 eV Total energy + Delta-G solvation = -2589.315875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03804 -38.79911 -36.67507 -34.25455 -33.52024 -31.74333 -30.69798 -27.96338 -27.22281 -24.32794 -23.00232 -22.53160 -20.99541 -19.86775 -18.49384 -17.87607 -16.92494 -16.26985 -16.18717 -15.56932 -15.10680 -14.84193 -14.43030 -14.19767 -14.03580 -13.86942 -13.72156 -13.32031 -13.11730 -12.90708 -12.60349 -12.17615 -12.02677 -11.93519 -11.66314 -11.50984 -11.31587 -10.69609 -9.67470 -9.51196 -9.02232 -8.62531 -6.51245 0.46182 0.56683 1.33674 1.44786 1.64657 2.34726 2.44863 2.86210 2.97133 3.52253 3.63704 3.91761 4.03014 4.15081 4.27505 4.32751 4.42320 4.55107 4.66452 4.69081 4.72689 4.87599 4.97698 5.04397 5.20115 5.29515 5.51426 5.60258 5.64574 5.74601 5.89134 5.92234 6.36059 6.41838 6.49598 6.77561 7.28707 8.51171 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.009915 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.956594 B = 2823.417088 C = 3540.854047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.058 3.942 3 H 0.093 0.907 4 C -0.091 4.091 5 C -0.188 4.188 6 C -0.088 4.088 7 C -0.148 4.148 8 C -0.095 4.095 9 C -0.087 4.087 10 C 0.223 3.777 11 H 0.028 0.972 12 N -0.842 5.842 13 C -0.613 4.613 14 H 0.007 0.993 15 C -0.019 4.019 16 N -0.930 5.930 17 Si 1.089 2.911 18 H -0.282 1.282 19 H -0.277 1.277 20 H -0.236 1.236 21 C 0.072 3.928 22 O -0.331 6.331 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.130 0.870 31 H 0.330 0.670 32 H 0.332 0.668 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 8.844 -14.512 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.002 3.998 3 H 0.111 0.889 4 C -0.127 4.127 5 C -0.188 4.188 6 C -0.106 4.106 7 C -0.166 4.166 8 C -0.113 4.113 9 C -0.088 4.088 10 C 0.113 3.887 11 H 0.046 0.954 12 N -0.373 5.373 13 C -0.652 4.652 14 H 0.025 0.975 15 C -0.218 4.218 16 N -0.566 5.566 17 Si 0.910 3.090 18 H -0.208 1.208 19 H -0.202 1.202 20 H -0.160 1.160 21 C 0.027 3.973 22 O -0.247 6.247 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.175 0.825 29 H 0.174 0.826 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.438 10.018 -13.237 16.662 hybrid contribution -0.693 -2.023 -0.673 2.242 sum 0.744 7.994 -13.910 16.061 Atomic orbital electron populations 1.21888 0.90771 1.02907 1.04392 1.23747 0.97016 0.95666 0.83342 0.88923 1.21859 0.93299 0.99347 0.98237 1.21186 0.99323 1.05701 0.92636 1.20577 0.91811 0.97130 1.01053 1.21354 1.00633 1.02091 0.92504 1.20864 0.96607 0.98019 0.95848 1.19488 0.92995 1.00692 0.95604 1.17900 0.87405 0.94426 0.88963 0.95436 1.59757 1.19888 1.39409 1.18227 1.22693 1.38501 1.08381 0.95653 0.97468 1.27277 0.92998 1.03368 0.98180 1.70975 1.45544 1.02257 1.37804 0.83470 0.79369 0.71710 0.74449 1.20764 1.20231 1.16048 1.19647 0.87143 0.96706 0.93804 1.86917 1.34743 1.63341 1.39691 0.92898 0.91920 0.86820 0.86127 0.88704 0.82531 0.82620 0.85198 0.85565 0.85550 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.59 71.98 0.69 -2.60 16 2 C 0.06 1.67 4.25 31.18 0.13 1.80 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.09 -2.27 6.65 30.73 0.20 -2.07 16 5 C -0.19 -6.33 6.27 -19.53 -0.12 -6.45 16 6 C -0.09 -2.55 10.03 22.18 0.22 -2.33 16 7 C -0.15 -4.58 10.07 22.31 0.22 -4.36 16 8 C -0.10 -3.74 9.25 22.21 0.21 -3.53 16 9 C -0.09 -4.03 5.02 -19.68 -0.10 -4.13 16 10 C 0.22 11.48 2.44 43.43 0.11 11.59 16 11 H 0.03 1.50 6.82 -2.39 -0.02 1.49 16 12 N -0.84 -37.90 8.73 -174.95 -1.53 -39.43 16 13 C -0.61 -36.84 9.00 25.60 0.23 -36.61 16 14 H 0.01 0.47 7.99 -2.91 -0.02 0.45 16 15 C -0.02 -1.16 5.43 84.65 0.46 -0.70 16 16 N -0.93 -59.66 13.69 21.44 0.29 -59.36 16 17 Si 1.09 51.78 26.48 68.60 1.82 53.60 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.24 -9.69 5.54 99.48 0.55 -9.14 16 21 C 0.07 3.15 6.74 22.68 0.15 3.30 16 22 O -0.33 -14.43 10.77 -95.10 -1.02 -15.46 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 2.19 7.93 -2.39 -0.02 2.17 16 28 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.13 4.85 6.32 -2.91 -0.02 4.83 16 31 H 0.33 14.62 5.53 -89.70 -0.50 14.12 16 32 H 0.33 14.34 7.31 -89.69 -0.66 13.68 16 33 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 Total: -1.00 -74.39 271.61 1.75 -72.64 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.22 Total: 34.10 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 2.41 Total: -46.09 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -1.23 Total: -98.79 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -1.02 Total: -15.46 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 1.82 Total: 53.60 kcal Total: -74.39 1.75 -72.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.083 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds