Wall clock time and date at job start Mon Mar 30 2020 03:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38228 * 119.62054 * 2 1 4 4 C 1.38633 * 119.16203 * 179.74716 * 3 2 1 5 5 C 1.38679 * 118.41715 * 0.50951 * 4 3 2 6 6 C 1.50701 * 120.41214 * 179.78509 * 5 4 3 7 7 C 1.50695 * 110.56876 * 355.29299 * 6 5 4 8 8 H 1.07997 * 119.99977 * 111.97148 * 7 6 5 9 9 C 1.37878 * 119.99779 * 291.96947 * 7 6 5 10 10 N 1.31516 * 119.99768 * 196.56883 * 9 7 6 11 11 Si 1.86803 * 120.00346 * 16.57443 * 9 7 6 12 12 H 1.48500 * 109.46906 * 84.71294 * 11 9 7 13 13 H 1.48494 * 109.47264 * 204.71535 * 11 9 7 14 14 H 1.48500 * 109.46768 * 324.72112 * 11 9 7 15 15 C 1.54516 * 110.50678 * 232.61352 * 6 5 4 16 16 C 1.54485 * 104.05939 * 241.35688 * 15 6 5 17 17 O 1.44428 * 104.89938 * 335.96588 * 16 15 6 18 18 C 1.44685 * 105.13701 * 40.49956 * 17 16 15 19 19 C 1.38175 * 119.16493 * 359.50976 * 5 4 3 20 20 N 1.31852 * 119.61960 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47135 * 269.97876 * 1 2 3 22 22 H 1.08999 * 109.46764 * 29.98377 * 1 2 3 23 23 H 1.08996 * 109.47009 * 149.97789 * 1 2 3 24 24 H 1.07995 * 120.41693 * 0.03859 * 3 2 1 25 25 H 1.08000 * 120.78880 * 180.27593 * 4 3 2 26 26 H 0.97006 * 119.99951 * 180.02562 * 10 9 7 27 27 H 1.09003 * 110.50750 * 122.71492 * 15 6 5 28 28 H 1.08994 * 110.50861 * 359.97438 * 15 6 5 29 29 H 1.08993 * 110.36950 * 94.85588 * 16 15 6 30 30 H 1.09006 * 110.36965 * 217.08092 * 16 15 6 31 31 H 1.09004 * 110.35202 * 200.67189 * 18 17 16 32 32 H 1.09004 * 110.35589 * 78.35880 * 18 17 16 33 33 H 1.07995 * 119.61725 * 180.24946 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0053 5 6 4.2266 -0.0343 -0.0003 6 6 5.7323 -0.0988 0.0002 7 6 6.3215 1.2839 -0.1083 8 1 6.8572 1.7097 0.7271 9 6 6.1766 2.0054 -1.2743 10 7 6.9434 3.0495 -1.5011 11 14 4.8910 1.4999 -2.5319 12 1 3.5794 2.0910 -2.1638 13 1 5.2942 1.9875 -3.8753 14 1 4.7775 0.0195 -2.5560 15 6 6.2362 -0.9942 -1.1538 16 6 6.9920 -2.1368 -0.4398 17 8 7.3820 -1.5836 0.8360 18 6 6.2432 -0.8064 1.2748 19 6 3.4766 -1.1948 -0.0007 20 7 2.1586 -1.1462 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6508 2.1373 0.0006 25 1 4.1367 2.1139 0.0099 26 1 6.8413 3.5573 -2.3213 27 1 6.9115 -0.4367 -1.8029 28 1 5.3963 -1.3905 -1.7244 29 1 6.3352 -2.9947 -0.2966 30 1 7.8728 -2.4256 -1.0134 31 1 6.5499 -0.0718 2.0195 32 1 5.4716 -1.4604 1.6810 33 1 3.9754 -2.1527 -0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261117004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:24 Heat of formation + Delta-G solvation = -2.695513 kcal Electronic energy + Delta-G solvation = -16923.681477 eV Core-core repulsion = 14335.703679 eV Total energy + Delta-G solvation = -2587.977798 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16608 -38.33058 -34.39674 -32.29569 -31.64866 -30.62526 -28.73469 -26.50128 -25.22507 -22.65530 -22.11720 -21.51283 -19.40454 -17.19445 -15.99224 -15.81869 -15.11945 -14.98236 -14.50654 -14.29074 -13.98561 -13.60727 -13.09430 -12.64265 -12.36550 -12.23841 -12.02369 -11.88857 -11.50595 -11.25175 -10.98238 -10.59744 -10.33748 -10.05479 -9.70587 -9.48109 -9.02876 -8.87523 -8.76497 -8.51857 -8.03382 -6.28936 -4.25667 1.64997 1.92000 3.16469 3.29774 3.34809 4.26642 4.30762 4.66887 4.78089 4.98837 5.22676 5.48537 5.58710 5.65798 5.72964 5.74576 5.76582 5.82147 5.94416 5.97239 6.03455 6.16351 6.29437 6.40547 6.43228 6.55114 6.70106 6.89331 6.97763 7.11874 7.31882 7.53220 7.66181 8.31277 8.50128 8.78276 9.34110 10.81793 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.013548 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.474875 B = 2066.220632 C = 2831.749651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.096 3.904 3 C -0.179 4.179 4 C -0.056 4.056 5 C -0.108 4.108 6 C 0.055 3.945 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.084 3.916 10 N -0.879 5.879 11 Si 0.839 3.161 12 H -0.266 1.266 13 H -0.296 1.296 14 H -0.245 1.245 15 C -0.148 4.148 16 C 0.047 3.953 17 O -0.376 6.376 18 C 0.070 3.930 19 C 0.086 3.914 20 N -0.494 5.494 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.124 0.876 25 H 0.155 0.845 26 H 0.266 0.734 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -5.886 1.382 10.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.199 4.199 4 C -0.081 4.081 5 C -0.110 4.110 6 C 0.053 3.947 7 C -0.548 4.548 8 H 0.099 0.901 9 C -0.120 4.120 10 N -0.515 5.515 11 Si 0.666 3.334 12 H -0.191 1.191 13 H -0.223 1.223 14 H -0.169 1.169 15 C -0.185 4.185 16 C -0.030 4.030 17 O -0.294 6.294 18 C -0.007 4.007 19 C -0.070 4.070 20 N -0.203 5.203 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.142 0.858 25 H 0.172 0.828 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.315 -6.531 1.370 10.661 hybrid contribution -0.355 0.808 -1.029 1.355 sum -8.670 -5.723 0.341 10.394 Atomic orbital electron populations 1.20591 0.89713 1.02643 1.02331 1.21084 0.96411 0.88783 0.97831 1.21967 0.95345 0.98641 1.03945 1.21964 0.93346 1.00378 0.92393 1.21506 0.98888 0.93030 0.97588 1.18808 0.86673 0.97377 0.91851 1.20692 1.35384 0.97299 1.01383 0.90138 1.24976 0.95139 0.94887 0.97030 1.69976 1.35951 1.19466 1.26079 0.87818 0.83126 0.81426 0.80983 1.19146 1.22310 1.16868 1.23606 0.99557 0.96407 0.98972 1.23347 0.98688 0.95494 0.85481 1.89090 1.37956 1.67219 1.35179 1.23478 0.87373 0.92811 0.97003 1.22529 0.89028 0.98203 0.97265 1.67394 1.10052 1.29291 1.13606 0.91097 0.91375 0.91129 0.85779 0.82803 0.92353 0.90150 0.92013 0.93689 0.90177 0.89300 0.94167 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.17 36.00 0.37 -0.87 16 2 C 0.10 1.69 6.78 -82.59 -0.56 1.13 16 3 C -0.18 -3.28 9.52 -39.44 -0.38 -3.65 16 4 C -0.06 -1.16 5.71 -39.27 -0.22 -1.39 16 5 C -0.11 -2.24 3.12 -104.48 -0.33 -2.57 16 6 C 0.05 1.20 0.55 -155.24 -0.08 1.11 16 7 C -0.51 -13.19 7.35 -34.44 -0.25 -13.45 16 8 H 0.08 2.28 7.77 -52.49 -0.41 1.88 16 9 C 0.08 2.23 4.42 -17.82 -0.08 2.15 16 10 N -0.88 -25.27 13.96 55.43 0.77 -24.50 16 11 Si 0.84 19.98 22.45 -169.99 -3.82 16.17 16 12 H -0.27 -6.16 6.00 56.52 0.34 -5.82 16 13 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.24 -5.59 4.33 56.52 0.24 -5.34 16 15 C -0.15 -3.04 4.07 -25.16 -0.10 -3.15 16 16 C 0.05 0.85 7.62 37.94 0.29 1.14 16 17 O -0.38 -7.79 11.67 -35.23 -0.41 -8.20 16 18 C 0.07 1.41 6.65 37.93 0.25 1.66 16 19 C 0.09 1.66 9.22 -17.55 -0.16 1.50 16 20 N -0.49 -9.36 10.27 -9.48 -0.10 -9.46 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 25 H 0.15 3.48 5.50 -52.49 -0.29 3.19 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.08 1.81 6.62 -51.93 -0.34 1.47 16 28 H 0.06 1.22 5.72 -51.93 -0.30 0.92 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.09 1.81 7.68 -51.93 -0.40 1.41 16 32 H 0.04 0.73 7.25 -51.93 -0.38 0.35 16 33 H 0.14 2.49 7.85 -52.49 -0.41 2.08 16 LS Contribution 256.36 15.07 3.86 3.86 Total: -1.00 -29.12 256.36 -5.36 -34.48 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.41 Total: 4.03 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.26 Total: -16.38 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.68 Total: -33.96 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.41 Total: -8.20 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -3.82 Total: 16.17 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.12 -5.36 -34.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.785 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds