Wall clock time and date at job start Mon Mar 30 2020 03:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38228 * 119.62054 * 2 1 4 4 C 1.38633 * 119.16203 * 179.74716 * 3 2 1 5 5 C 1.38679 * 118.41715 * 0.50951 * 4 3 2 6 6 C 1.50701 * 120.41214 * 179.78509 * 5 4 3 7 7 C 1.50695 * 110.56876 * 355.29299 * 6 5 4 8 8 H 1.07997 * 119.99977 * 111.97148 * 7 6 5 9 9 C 1.37878 * 119.99779 * 291.96947 * 7 6 5 10 10 N 1.31516 * 119.99768 * 196.56883 * 9 7 6 11 11 Si 1.86803 * 120.00346 * 16.57443 * 9 7 6 12 12 H 1.48500 * 109.46906 * 84.71294 * 11 9 7 13 13 H 1.48494 * 109.47264 * 204.71535 * 11 9 7 14 14 H 1.48500 * 109.46768 * 324.72112 * 11 9 7 15 15 C 1.54516 * 110.50678 * 232.61352 * 6 5 4 16 16 C 1.54485 * 104.05939 * 241.35688 * 15 6 5 17 17 O 1.44428 * 104.89938 * 335.96588 * 16 15 6 18 18 C 1.44685 * 105.13701 * 40.49956 * 17 16 15 19 19 C 1.38175 * 119.16493 * 359.50976 * 5 4 3 20 20 N 1.31852 * 119.61960 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47135 * 269.97876 * 1 2 3 22 22 H 1.08999 * 109.46764 * 29.98377 * 1 2 3 23 23 H 1.08996 * 109.47009 * 149.97789 * 1 2 3 24 24 H 1.07995 * 120.41693 * 0.03859 * 3 2 1 25 25 H 1.08000 * 120.78880 * 180.27593 * 4 3 2 26 26 H 0.97006 * 119.99951 * 180.02562 * 10 9 7 27 27 H 1.09003 * 110.50750 * 122.71492 * 15 6 5 28 28 H 1.08994 * 110.50861 * 359.97438 * 15 6 5 29 29 H 1.08993 * 110.36950 * 94.85588 * 16 15 6 30 30 H 1.09006 * 110.36965 * 217.08092 * 16 15 6 31 31 H 1.09004 * 110.35202 * 200.67189 * 18 17 16 32 32 H 1.09004 * 110.35589 * 78.35880 * 18 17 16 33 33 H 1.07995 * 119.61725 * 180.24946 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0053 5 6 4.2266 -0.0343 -0.0003 6 6 5.7323 -0.0988 0.0002 7 6 6.3215 1.2839 -0.1083 8 1 6.8572 1.7097 0.7271 9 6 6.1766 2.0054 -1.2743 10 7 6.9434 3.0495 -1.5011 11 14 4.8910 1.4999 -2.5319 12 1 3.5794 2.0910 -2.1638 13 1 5.2942 1.9875 -3.8753 14 1 4.7775 0.0195 -2.5560 15 6 6.2362 -0.9942 -1.1538 16 6 6.9920 -2.1368 -0.4398 17 8 7.3820 -1.5836 0.8360 18 6 6.2432 -0.8064 1.2748 19 6 3.4766 -1.1948 -0.0007 20 7 2.1586 -1.1462 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6508 2.1373 0.0006 25 1 4.1367 2.1139 0.0099 26 1 6.8413 3.5573 -2.3213 27 1 6.9115 -0.4367 -1.8029 28 1 5.3963 -1.3905 -1.7244 29 1 6.3352 -2.9947 -0.2966 30 1 7.8728 -2.4256 -1.0134 31 1 6.5499 -0.0718 2.0195 32 1 5.4716 -1.4604 1.6810 33 1 3.9754 -2.1527 -0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261117004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:24 Heat of formation + Delta-G solvation = -23.162017 kcal Electronic energy + Delta-G solvation = -16924.568971 eV Core-core repulsion = 14335.703679 eV Total energy + Delta-G solvation = -2588.865292 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68460 -39.86407 -36.07124 -34.07613 -33.16638 -32.13400 -30.27071 -27.94585 -27.00292 -24.18593 -23.64690 -22.99435 -21.12113 -19.01472 -17.58949 -17.38646 -16.63384 -16.47275 -16.30179 -15.82125 -15.36554 -15.13008 -14.95891 -14.18729 -13.78976 -13.61617 -13.58248 -13.09394 -13.03789 -12.89022 -12.60784 -12.40355 -11.93794 -11.77662 -11.42544 -11.29822 -10.79623 -10.55117 -10.31975 -10.22172 -9.50556 -8.38270 -6.36925 0.20603 0.39482 1.26404 1.36097 1.40071 2.27707 2.85634 2.90704 3.22631 3.47316 3.92960 4.01076 4.09432 4.17352 4.24266 4.27978 4.31054 4.48784 4.66378 4.68530 4.80258 4.83827 4.86756 4.92875 4.96130 5.07575 5.23758 5.30763 5.36945 5.50123 5.73334 5.86917 6.04684 6.24622 6.67095 7.06712 7.25873 8.76669 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.022103 B = 0.013548 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.474875 B = 2066.220632 C = 2831.749651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.099 3.901 3 C -0.182 4.182 4 C -0.078 4.078 5 C -0.124 4.124 6 C 0.051 3.949 7 C -0.505 4.505 8 H 0.037 0.963 9 C 0.042 3.958 10 N -0.932 5.932 11 Si 0.895 3.105 12 H -0.256 1.256 13 H -0.310 1.310 14 H -0.225 1.225 15 C -0.148 4.148 16 C 0.048 3.952 17 O -0.396 6.396 18 C 0.073 3.927 19 C 0.091 3.909 20 N -0.500 5.500 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.149 0.851 25 H 0.126 0.874 26 H 0.265 0.735 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 -8.200 1.141 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.038 4.038 3 C -0.201 4.201 4 C -0.104 4.104 5 C -0.126 4.126 6 C 0.049 3.951 7 C -0.543 4.543 8 H 0.055 0.945 9 C -0.158 4.158 10 N -0.570 5.570 11 Si 0.721 3.279 12 H -0.181 1.181 13 H -0.239 1.239 14 H -0.148 1.148 15 C -0.186 4.186 16 C -0.028 4.028 17 O -0.315 6.315 18 C -0.004 4.004 19 C -0.066 4.066 20 N -0.210 5.210 21 H 0.108 0.892 22 H 0.107 0.893 23 H 0.096 0.904 24 H 0.167 0.833 25 H 0.144 0.856 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.018 -8.869 1.148 14.191 hybrid contribution 0.474 1.553 -0.850 1.833 sum -10.544 -7.316 0.298 12.837 Atomic orbital electron populations 1.20725 0.86206 1.04116 1.04014 1.21814 0.98652 0.87904 0.95434 1.22250 0.94237 1.00421 1.03204 1.21852 0.94764 0.99455 0.94280 1.21280 0.97771 0.93863 0.99730 1.18733 0.87766 0.95075 0.93479 1.20850 1.34228 0.99439 0.99735 0.94480 1.25578 0.96531 0.94728 0.98928 1.70104 1.38361 1.21520 1.27037 0.86915 0.81124 0.82174 0.77646 1.18079 1.23900 1.14802 1.23508 0.99774 0.96928 0.98384 1.23541 0.99944 0.95261 0.84092 1.89068 1.38559 1.67441 1.36428 1.23440 0.87874 0.93005 0.96034 1.22754 0.89248 0.98229 0.96341 1.67541 1.09722 1.29877 1.13821 0.89151 0.89269 0.90360 0.83308 0.85641 0.92534 0.92893 0.90561 0.89993 0.88493 0.90873 0.91308 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.97 10.17 71.23 0.72 -1.25 16 2 C 0.10 3.09 6.78 42.55 0.29 3.38 16 3 C -0.18 -6.14 9.52 22.36 0.21 -5.93 16 4 C -0.08 -3.18 5.71 22.47 0.13 -3.05 16 5 C -0.12 -4.95 3.12 -19.77 -0.06 -5.01 16 6 C 0.05 2.22 0.55 -52.66 -0.03 2.19 16 7 C -0.51 -27.17 7.35 25.60 0.19 -26.98 16 8 H 0.04 2.25 7.77 -2.91 -0.02 2.23 16 9 C 0.04 2.30 4.42 84.65 0.37 2.68 16 10 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 11 Si 0.90 41.94 22.45 68.60 1.54 43.48 16 12 H -0.26 -11.41 6.00 99.48 0.60 -10.81 16 13 H -0.31 -15.14 7.11 99.48 0.71 -14.44 16 14 H -0.22 -9.70 4.33 99.48 0.43 -9.27 16 15 C -0.15 -5.86 4.07 31.61 0.13 -5.73 16 16 C 0.05 1.59 7.62 72.49 0.55 2.15 16 17 O -0.40 -15.85 11.67 -148.98 -1.74 -17.59 16 18 C 0.07 2.88 6.65 72.48 0.48 3.37 16 19 C 0.09 3.17 9.22 84.67 0.78 3.95 16 20 N -0.50 -16.99 10.27 -183.90 -1.89 -18.88 16 21 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 22 H 0.09 1.53 8.08 -2.39 -0.02 1.52 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 25 H 0.13 5.81 5.50 -2.91 -0.02 5.79 16 26 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 27 H 0.05 2.37 6.62 -2.39 -0.02 2.35 16 28 H 0.08 2.78 5.72 -2.39 -0.01 2.76 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.07 3.06 7.68 -2.39 -0.02 3.04 16 32 H 0.07 2.33 7.25 -2.38 -0.02 2.31 16 33 H 0.17 4.97 7.85 -2.91 -0.02 4.94 16 Total: -1.00 -64.69 256.36 2.70 -61.99 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.72 Total: 17.15 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 3.77 Total: -30.24 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.59 Total: -74.78 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -1.74 Total: -17.59 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.54 Total: 43.48 kcal Total: -64.69 2.70 -61.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.826 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds