Wall clock time and date at job start Mon Mar 30 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99807 * 2 1 4 4 H 1.48500 * 109.46817 * 272.26583 * 3 2 1 5 5 H 1.48496 * 109.47429 * 32.26735 * 3 2 1 6 6 H 1.48498 * 109.47127 * 152.26820 * 3 2 1 7 7 C 1.37874 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00491 * 353.28316 * 7 2 1 9 9 C 1.50702 * 119.99619 * 173.27685 * 7 2 1 10 10 H 1.09001 * 109.47763 * 354.67047 * 9 7 2 11 11 C 1.50702 * 109.47229 * 234.66655 * 9 7 2 12 12 C 1.38670 * 120.41467 * 99.94129 * 11 9 7 13 13 C 1.38631 * 118.42260 * 180.02562 * 12 11 9 14 14 C 1.38226 * 119.15930 * 0.02562 * 13 12 11 15 15 N 1.31863 * 120.76366 * 0.02562 * 14 13 12 16 16 C 1.31889 * 121.72409 * 0.02562 * 15 14 13 17 17 N 1.46909 * 109.46870 * 114.67202 * 9 7 2 18 18 C 1.47479 * 110.99997 * 31.01361 * 17 9 7 19 19 C 1.53514 * 87.93021 * 221.29949 * 18 17 9 20 20 N 1.46901 * 114.16464 * 272.37472 * 19 18 17 21 21 C 1.47481 * 110.99788 * 295.04122 * 17 9 7 22 22 H 0.97006 * 119.99701 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.79258 * 0.02562 * 12 11 9 24 24 H 1.07996 * 120.42142 * 180.02562 * 13 12 11 25 25 H 1.07997 * 119.62415 * 180.02562 * 14 13 12 26 26 H 1.07994 * 119.61615 * 179.97438 * 16 15 14 27 27 H 1.09001 * 113.47170 * 336.06272 * 18 17 9 28 28 H 1.08995 * 113.47541 * 106.52812 * 18 17 9 29 29 H 1.08998 * 114.17186 * 139.67292 * 19 18 17 30 30 H 1.00893 * 111.00458 * 273.83941 * 20 19 18 31 31 H 1.00900 * 111.00361 * 37.80081 * 20 19 18 32 32 H 1.09002 * 113.47112 * 253.47119 * 21 17 9 33 33 H 1.08994 * 113.47918 * 23.87651 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4486 2.0741 -1.3990 5 1 1.4714 2.6384 0.7474 6 1 3.5698 1.4269 0.6515 7 6 2.0045 -1.1940 0.0005 8 1 1.4702 -2.1261 0.1103 9 6 3.5037 -1.1985 -0.1523 10 1 3.8525 -0.1838 -0.3442 11 6 3.8885 -2.0886 -1.3058 12 6 4.1949 -1.5417 -2.5427 13 6 4.5430 -2.3988 -3.5752 14 6 4.5723 -3.7605 -3.3393 15 7 4.2737 -4.2455 -2.1500 16 6 3.9373 -3.4602 -1.1452 17 7 4.1202 -1.7029 1.0822 18 6 3.2439 -2.6848 1.7476 19 6 3.6190 -2.0303 3.0846 20 7 4.8333 -2.5790 3.7029 21 6 3.8628 -0.7909 2.2123 22 1 -0.4850 0.8401 -0.0004 23 1 4.1632 -0.4734 -2.6981 24 1 4.7882 -2.0077 -4.5516 25 1 4.8428 -4.4350 -4.1381 26 1 3.6989 -3.8940 -0.1854 27 1 2.1909 -2.5721 1.4893 28 1 3.5939 -3.7128 1.6539 29 1 2.7867 -1.9292 3.7811 30 1 4.6188 -3.3897 4.2639 31 1 5.5284 -2.7962 3.0045 32 1 4.7375 -0.2139 2.5124 33 1 2.9757 -0.1722 2.0776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:37 Heat of formation + Delta-G solvation = 61.627035 kcal Electronic energy + Delta-G solvation = -16650.923412 eV Core-core repulsion = 14098.027600 eV Total energy + Delta-G solvation = -2552.895812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60461 -40.37667 -35.79135 -34.03800 -33.13152 -32.12677 -29.48100 -27.00599 -26.83734 -24.63472 -24.13847 -21.89337 -20.26043 -19.13208 -18.02089 -17.72352 -16.96191 -16.65117 -16.15902 -15.58863 -15.49679 -14.93746 -14.71052 -14.54022 -13.92830 -13.86599 -13.76413 -13.25114 -13.16142 -12.71451 -12.37563 -12.04177 -11.72270 -11.60664 -11.20550 -10.86641 -10.59708 -10.26958 -9.78928 -9.49687 -9.35186 -8.41018 -6.48005 0.37855 0.48737 1.25241 1.31416 1.38415 2.21818 2.85353 3.10473 3.39874 3.57778 3.66939 3.93458 4.04084 4.14541 4.20750 4.29713 4.38046 4.52755 4.76830 4.81570 4.86067 4.91569 5.04780 5.09067 5.22165 5.27710 5.39665 5.52833 5.61002 5.92174 6.18076 6.28500 6.32515 6.58037 6.72414 7.14294 7.19553 8.72931 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.013028 C = 0.008813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.838583 B = 2148.722382 C = 3176.315679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.036 3.964 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.522 4.522 8 H 0.047 0.953 9 C 0.179 3.821 10 H 0.052 0.948 11 C -0.092 4.092 12 C -0.104 4.104 13 C -0.161 4.161 14 C 0.064 3.936 15 N -0.508 5.508 16 C 0.085 3.915 17 N -0.476 5.476 18 C -0.037 4.037 19 C 0.079 3.921 20 N -0.819 5.819 21 C 0.006 3.994 22 H 0.269 0.731 23 H 0.131 0.869 24 H 0.166 0.834 25 H 0.184 0.816 26 H 0.144 0.856 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.351 0.649 31 H 0.348 0.652 32 H 0.075 0.925 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.296 -2.532 -0.796 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.165 4.165 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.071 3.929 10 H 0.070 0.930 11 C -0.095 4.095 12 C -0.131 4.131 13 C -0.180 4.180 14 C -0.093 4.093 15 N -0.217 5.217 16 C -0.071 4.071 17 N -0.198 5.198 18 C -0.168 4.168 19 C -0.035 4.035 20 N -0.349 5.349 21 C -0.123 4.123 22 H 0.078 0.922 23 H 0.149 0.851 24 H 0.184 0.816 25 H 0.200 0.800 26 H 0.161 0.839 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.094 0.906 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.921 -2.794 -0.498 10.319 hybrid contribution -1.499 1.249 -0.724 2.081 sum 8.422 -1.545 -1.222 8.650 Atomic orbital electron populations 1.70026 1.08047 1.28336 1.50207 1.25801 0.95210 1.02137 0.93353 0.86198 0.80286 0.79830 0.79340 1.19452 1.21037 1.16353 1.21244 0.91030 0.93520 1.50244 0.93456 1.19010 0.92138 0.93706 0.88071 0.93013 1.21124 0.95528 0.96114 0.96740 1.21672 0.97453 1.01067 0.92867 1.22367 1.00571 0.94531 1.00550 1.23191 0.97206 0.94424 0.94499 1.67629 1.11841 1.40959 1.01306 1.22537 0.96748 0.90186 0.97618 1.69165 1.41321 1.07997 1.01294 1.24721 0.99721 0.96563 0.95783 1.22483 0.92907 0.95091 0.92975 1.58590 1.10085 1.38237 1.27958 1.23739 1.00400 0.96354 0.91855 0.92159 0.85083 0.81622 0.79956 0.83902 0.90103 0.91161 0.88914 0.83465 0.83803 0.90617 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.96 21.45 0.30 -53.47 16 2 C 0.04 1.92 5.21 84.65 0.44 2.37 16 3 Si 0.92 40.67 25.42 68.60 1.74 42.42 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.92 5.87 99.48 0.58 -9.34 16 7 C -0.52 -26.90 6.26 25.60 0.16 -26.74 16 8 H 0.05 2.76 6.62 -2.91 -0.02 2.74 16 9 C 0.18 7.92 2.09 43.42 0.09 8.01 16 10 H 0.05 2.33 4.60 -2.39 -0.01 2.32 16 11 C -0.09 -3.85 4.95 -19.77 -0.10 -3.95 16 12 C -0.10 -3.80 9.82 22.47 0.22 -3.58 16 13 C -0.16 -4.76 10.11 22.36 0.23 -4.54 16 14 C 0.06 1.96 11.18 84.69 0.95 2.91 16 15 N -0.51 -19.14 10.36 -195.84 -2.03 -21.17 16 16 C 0.09 3.47 10.42 84.67 0.88 4.35 16 17 N -0.48 -18.82 5.86 -911.33 -5.34 -24.15 16 18 C -0.04 -1.37 5.62 83.58 0.47 -0.90 16 19 C 0.08 2.57 5.42 45.37 0.25 2.82 16 20 N -0.82 -22.09 9.68 -167.95 -1.63 -23.71 16 21 C 0.01 0.24 6.74 83.58 0.56 0.80 16 22 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 23 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 24 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 25 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 26 H 0.14 5.81 5.14 -2.91 -0.01 5.79 16 27 H 0.08 3.63 4.85 -2.39 -0.01 3.62 16 28 H 0.07 2.42 6.95 -2.39 -0.02 2.40 16 29 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.35 7.68 9.08 -89.70 -0.81 6.87 16 31 H 0.35 9.55 8.71 -89.69 -0.78 8.76 16 32 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.06 2.56 4.94 -2.39 -0.01 2.55 16 Total: -1.00 -60.77 262.82 -3.36 -64.13 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.56 Total: 34.41 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 4.15 Total: -18.46 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -8.69 Total: -122.50 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.74 Total: 42.42 kcal Total: -60.77 -3.36 -64.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.757 kcal (2) G-P(sol) polarization free energy of solvation -60.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds