Wall clock time and date at job start Mon Mar 30 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.80776 * 2 1 4 4 C 1.54704 * 110.75069 * 123.32224 * 2 1 3 5 5 C 1.51646 * 101.92599 * 143.60524 * 4 2 1 6 6 C 1.37742 * 132.17044 * 164.59444 * 5 4 2 7 7 C 1.38355 * 119.97259 * 180.38352 * 6 5 4 8 8 C 1.50703 * 120.11299 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47253 * 20.03790 * 8 7 6 10 10 N 1.46899 * 109.47022 * 140.04430 * 8 7 6 11 11 C 1.50698 * 109.47254 * 260.03990 * 8 7 6 12 12 H 1.08007 * 119.99849 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00302 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00221 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 120.00138 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47058 * 90.00193 * 15 13 11 17 17 H 1.48495 * 109.47497 * 210.00116 * 15 13 11 18 18 H 1.48501 * 109.47223 * 330.00561 * 15 13 11 19 19 C 1.38285 * 119.76948 * 0.02562 * 7 6 5 20 20 C 1.37926 * 120.35067 * 359.78983 * 19 7 6 21 21 C 1.38876 * 107.04191 * 344.61741 * 5 4 2 22 22 O 1.36140 * 111.23762 * 358.92412 * 21 5 4 23 23 H 1.09002 * 109.46915 * 296.68284 * 1 2 3 24 24 H 1.09005 * 109.46766 * 56.67503 * 1 2 3 25 25 H 1.08991 * 109.47566 * 176.68084 * 1 2 3 26 26 H 1.09002 * 110.93759 * 25.44860 * 4 2 1 27 27 H 1.08990 * 110.93855 * 261.76574 * 4 2 1 28 28 H 1.07999 * 120.01911 * 0.35493 * 6 5 4 29 29 H 1.00904 * 110.99468 * 296.03877 * 10 8 7 30 30 H 1.00895 * 111.00638 * 59.99628 * 10 8 7 31 31 H 0.96996 * 120.00472 * 180.02562 * 14 13 11 32 32 H 1.07998 * 119.82531 * 179.82194 * 19 7 6 33 33 H 1.07999 * 119.87880 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0781 -0.7947 1.2088 5 6 3.3060 -1.4589 0.6165 6 6 4.3933 -2.0759 1.1948 7 6 5.3952 -2.6004 0.3977 8 6 6.5865 -3.2756 1.0271 9 1 6.3386 -3.5746 2.0456 10 7 6.9474 -4.4635 0.2420 11 6 7.7503 -2.3186 1.0537 12 1 7.6384 -1.3210 0.6552 13 6 8.9576 -2.7161 1.5878 14 7 9.0939 -3.9305 2.0736 15 14 10.4005 -1.5300 1.6202 16 1 10.3771 -0.7565 2.8876 17 1 11.6710 -2.2933 1.5295 18 1 10.3003 -0.5971 0.4691 19 6 5.3002 -2.5020 -0.9783 20 6 4.2104 -1.8880 -1.5595 21 6 3.1955 -1.3610 -0.7644 22 8 2.0393 -0.7384 -1.1237 23 1 -0.3633 0.4615 0.9183 24 1 -0.3633 0.5646 -0.8587 25 1 -0.3634 -1.0258 -0.0595 26 1 1.3565 -1.5393 1.5450 27 1 2.3525 -0.1246 2.0235 28 1 4.4640 -2.1498 2.2699 29 1 6.2072 -5.1490 0.2626 30 1 7.1816 -4.2126 -0.7068 31 1 9.9431 -4.2101 2.4497 32 1 6.0831 -2.9086 -1.6012 33 1 4.1438 -1.8158 -2.6350 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:42 Heat of formation + Delta-G solvation = -29.914086 kcal Electronic energy + Delta-G solvation = -15940.330555 eV Core-core repulsion = 13351.172471 eV Total energy + Delta-G solvation = -2589.158084 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.04714 -39.08403 -35.90725 -34.07693 -33.52540 -31.77406 -30.57501 -27.92853 -27.28070 -24.46056 -23.02972 -22.58310 -21.31203 -18.59506 -18.32332 -17.59486 -16.88333 -16.40062 -16.28383 -15.54157 -15.06117 -14.83266 -14.39773 -14.15791 -14.04151 -13.65667 -13.35458 -13.22281 -13.13145 -12.87476 -12.70138 -12.48014 -12.18046 -11.82474 -11.74292 -11.48233 -11.09686 -10.54205 -9.78021 -9.07897 -8.74198 -7.96971 -6.19007 0.39980 0.49720 1.43147 1.44755 1.54151 2.29483 2.46874 2.83892 3.26011 3.51004 3.62087 3.95816 4.05436 4.20763 4.28012 4.39735 4.45288 4.56530 4.65977 4.70165 4.76589 4.93037 5.00118 5.14154 5.23971 5.34499 5.40621 5.47897 5.72467 5.75610 5.89945 6.17693 6.33096 6.66496 7.11486 7.27568 7.53483 9.05853 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.041496 B = 0.005984 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.609892 B = 4677.720444 C = 4835.231869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.091 0.909 4 C -0.101 4.101 5 C -0.180 4.180 6 C -0.086 4.086 7 C -0.118 4.118 8 C 0.264 3.736 9 H 0.012 0.988 10 N -0.819 5.819 11 C -0.542 4.542 12 H 0.043 0.957 13 C 0.036 3.964 14 N -0.880 5.880 15 Si 0.947 3.053 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.094 4.094 20 C -0.140 4.140 21 C 0.070 3.930 22 O -0.320 6.320 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.311 0.689 30 H 0.324 0.676 31 H 0.256 0.744 32 H 0.129 0.871 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.250 6.848 -3.548 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 H 0.109 0.891 4 C -0.137 4.137 5 C -0.181 4.181 6 C -0.105 4.105 7 C -0.120 4.120 8 C 0.154 3.846 9 H 0.029 0.971 10 N -0.346 5.346 11 C -0.581 4.581 12 H 0.062 0.938 13 C -0.167 4.167 14 N -0.516 5.516 15 Si 0.773 3.227 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.113 4.113 20 C -0.158 4.158 21 C 0.025 3.975 22 O -0.235 6.235 23 H 0.121 0.879 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.643 6.620 -3.140 16.374 hybrid contribution 0.367 0.601 -0.302 0.766 sum -14.277 7.221 -3.442 16.365 Atomic orbital electron populations 1.21885 0.89857 1.03558 1.04505 1.23658 0.97302 0.95233 0.82401 0.89096 1.21941 0.93411 0.99537 0.98852 1.21049 0.98198 1.04500 0.94313 1.20318 0.92527 0.97828 0.99850 1.21369 0.97082 0.99114 0.94465 1.17779 0.88234 0.87148 0.91464 0.97053 1.59021 1.45189 1.13836 1.16594 1.21118 0.96801 0.98061 1.42090 0.93833 1.25660 1.00696 0.96107 0.94287 1.70220 1.24864 1.18214 1.38253 0.85759 0.79327 0.79219 0.78381 1.20242 1.20905 1.19718 1.20726 0.97055 0.99052 0.94428 1.20365 0.92300 1.02995 1.00168 1.19588 0.87855 0.96859 0.93170 1.86772 1.34426 1.63072 1.39252 0.87885 0.90858 0.91858 0.88088 0.87779 0.86371 0.87764 0.86302 0.93530 0.85324 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.58 71.98 0.69 -1.39 16 2 C 0.07 1.52 4.26 31.18 0.13 1.66 16 3 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.10 -2.39 6.65 30.73 0.20 -2.18 16 5 C -0.18 -6.05 6.27 -19.53 -0.12 -6.17 16 6 C -0.09 -3.38 9.66 22.18 0.21 -3.17 16 7 C -0.12 -5.06 4.89 -19.82 -0.10 -5.16 16 8 C 0.26 13.31 2.86 43.42 0.12 13.44 16 9 H 0.01 0.65 8.01 -2.39 -0.02 0.63 16 10 N -0.82 -38.88 8.37 -174.95 -1.46 -40.34 16 11 C -0.54 -30.16 8.70 25.60 0.22 -29.94 16 12 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 13 C 0.04 2.03 5.39 84.65 0.46 2.48 16 14 N -0.88 -51.79 12.77 21.44 0.27 -51.51 16 15 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 C -0.09 -3.63 9.27 22.21 0.21 -3.42 16 20 C -0.14 -4.83 10.06 22.45 0.23 -4.60 16 21 C 0.07 2.39 7.04 22.68 0.16 2.55 16 22 O -0.32 -9.64 10.81 -95.14 -1.03 -10.67 16 23 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 2.10 7.92 -2.39 -0.02 2.08 16 27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.12 4.50 8.04 -2.91 -0.02 4.48 16 29 H 0.31 13.25 9.06 -89.69 -0.81 12.44 16 30 H 0.32 14.46 7.35 -89.70 -0.66 13.81 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.13 4.75 6.67 -2.91 -0.02 4.73 16 33 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -64.96 279.30 1.88 -63.08 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.35 Total: 29.22 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 2.42 Total: -35.90 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -1.19 Total: -91.85 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.03 Total: -10.67 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.96 1.88 -63.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.164 kcal (2) G-P(sol) polarization free energy of solvation -64.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds