Wall clock time and date at job start Mon Mar 30 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47171 * 2 1 4 4 N 1.46893 * 109.47157 * 120.00140 * 2 1 3 5 5 C 1.50702 * 109.46981 * 240.00304 * 2 1 3 6 6 C 1.32661 * 120.00403 * 123.66516 * 5 2 1 7 7 C 1.47682 * 119.99874 * 7.14450 * 6 5 2 8 8 C 1.39505 * 120.18268 * 42.13685 * 7 6 5 9 9 C 1.37951 * 119.92178 * 179.74637 * 8 7 6 10 10 C 1.38475 * 120.29584 * 0.55392 * 9 8 7 11 11 C 1.38116 * 120.36924 * 359.70278 * 10 9 8 12 12 C 1.38722 * 120.07117 * 0.02562 * 11 10 9 13 13 O 1.35649 * 120.14933 * 179.97438 * 12 11 10 14 14 C 1.34804 * 116.99685 * 354.58781 * 13 12 11 15 15 H 1.07997 * 120.00369 * 5.06034 * 14 13 12 16 16 C 1.38651 * 119.99728 * 185.06069 * 14 13 12 17 17 N 1.31558 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99854 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47158 * 90.00098 * 18 16 14 20 20 H 1.48506 * 109.46878 * 210.00041 * 18 16 14 21 21 H 1.48504 * 109.46966 * 329.99858 * 18 16 14 22 22 H 1.08993 * 109.47272 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47254 * 300.00208 * 1 2 3 24 24 H 1.09003 * 109.47097 * 59.99804 * 1 2 3 25 25 H 1.00901 * 111.00380 * 59.99509 * 4 2 1 26 26 H 1.00904 * 111.00004 * 183.95107 * 4 2 1 27 27 H 1.08004 * 119.99754 * 303.93456 * 5 2 1 28 28 H 1.08001 * 120.00719 * 187.14666 * 6 5 2 29 29 H 1.08004 * 120.03592 * 359.97438 * 8 7 6 30 30 H 1.08008 * 119.84677 * 180.25149 * 9 8 7 31 31 H 1.08008 * 119.81237 * 179.71552 * 10 9 8 32 32 H 1.08006 * 119.96121 * 180.02562 * 11 10 9 33 33 H 0.96989 * 120.00436 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0323 -0.7104 -1.2305 6 6 2.8538 -0.0888 -2.0664 7 6 3.4013 1.2368 -1.7145 8 6 3.8459 1.4901 -0.4167 9 6 4.3611 2.7287 -0.0952 10 6 4.4289 3.7270 -1.0525 11 6 3.9872 3.4912 -2.3397 12 6 3.4715 2.2495 -2.6811 13 8 3.0368 2.0164 -3.9448 14 6 3.0285 3.0647 -4.7922 15 1 3.4344 4.0153 -4.4793 16 6 2.4989 2.9224 -6.0657 17 7 2.0049 1.7643 -6.4471 18 14 2.4868 4.3753 -7.2398 19 1 3.7426 4.3817 -8.0323 20 1 1.3237 4.2614 -8.1562 21 1 2.3843 5.6376 -6.4643 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6961 -1.6479 1.2227 26 1 3.0262 -0.6501 1.2558 27 1 1.7200 -1.7240 -1.4342 28 1 3.1223 -0.5522 -3.0043 29 1 3.7901 0.7161 0.3345 30 1 4.7088 2.9222 0.9089 31 1 4.8295 4.6954 -0.7910 32 1 4.0435 4.2745 -3.0812 33 1 1.6347 1.6647 -7.3380 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389667286.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:47 Heat of formation + Delta-G solvation = 12.122910 kcal Electronic energy + Delta-G solvation = -16000.051326 eV Core-core repulsion = 13412.716103 eV Total energy + Delta-G solvation = -2587.335223 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.29908 -37.18821 -35.83627 -32.52908 -32.16395 -29.37216 -28.74518 -27.98947 -25.39605 -23.04723 -21.44346 -21.11898 -18.79761 -18.02705 -16.71774 -15.95062 -15.12985 -14.75137 -14.53910 -14.21922 -13.76395 -13.65742 -13.28866 -13.06170 -12.54810 -12.03194 -11.73864 -11.70931 -11.47234 -11.31538 -11.05876 -10.76560 -10.70766 -10.48099 -10.33989 -9.40698 -9.21132 -8.88352 -8.57132 -7.77745 -7.12488 -6.50971 -4.09191 1.78596 2.32673 2.97219 3.09431 3.10594 3.15225 3.91673 4.54373 4.83095 5.03640 5.18520 5.26962 5.48936 5.55180 5.64735 5.76603 5.79222 5.97387 6.08339 6.19265 6.23521 6.42581 6.54181 6.63712 6.81065 6.94252 6.98696 7.13597 7.25895 7.33177 7.37748 7.46823 7.63988 7.77556 7.93701 8.94488 9.63523 10.66513 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.007448 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.967897 B = 3758.266788 C = 4432.251426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.105 3.895 3 H 0.102 0.898 4 N -0.841 5.841 5 C -0.232 4.232 6 C -0.049 4.049 7 C -0.149 4.149 8 C -0.061 4.061 9 C -0.216 4.216 10 C -0.070 4.070 11 C -0.234 4.234 12 C 0.164 3.836 13 O -0.168 6.168 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.859 5.859 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.333 0.667 26 H 0.336 0.664 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -1.239 8.996 9.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.005 4.005 3 H 0.120 0.880 4 N -0.369 5.369 5 C -0.252 4.252 6 C -0.068 4.068 7 C -0.151 4.151 8 C -0.079 4.079 9 C -0.235 4.235 10 C -0.088 4.088 11 C -0.254 4.254 12 C 0.110 3.890 13 O -0.070 6.070 14 C -0.470 4.470 15 H 0.110 0.890 16 C -0.164 4.164 17 N -0.493 5.493 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.454 -0.989 9.077 9.142 hybrid contribution 0.512 0.110 -1.459 1.550 sum 0.967 -0.879 7.618 7.729 Atomic orbital electron populations 1.21731 0.94745 1.01294 1.01772 1.20807 0.95118 0.99143 0.85439 0.88049 1.59172 1.15880 1.20848 1.41034 1.23786 1.01739 0.99936 0.99721 1.21563 0.95085 0.92649 0.97510 1.18155 1.10218 0.94021 0.92673 1.20885 0.96635 0.96684 0.93742 1.20540 1.09226 0.94579 0.99145 1.20829 0.97157 0.97901 0.92898 1.21139 1.08247 0.98351 0.97632 1.19427 0.91670 0.92347 0.85588 1.83934 1.71539 1.36339 1.15202 1.21354 1.41536 0.90602 0.93555 0.89007 1.25291 0.95767 0.98326 0.96981 1.70032 1.36398 1.23247 1.19645 0.85713 0.78326 0.79848 0.79570 1.19830 1.20194 1.19140 0.93369 0.92353 0.92084 0.85491 0.85079 0.87860 0.86750 0.86726 0.87413 0.87427 0.85420 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.47 37.16 0.35 -1.65 16 2 C 0.11 1.62 2.68 -68.87 -0.18 1.44 16 3 H 0.10 1.79 4.73 -51.93 -0.25 1.54 16 4 N -0.84 -10.84 9.17 -5.66 -0.05 -10.89 16 5 C -0.23 -3.89 9.00 -36.20 -0.33 -4.21 16 6 C -0.05 -0.97 9.32 -37.62 -0.35 -1.32 16 7 C -0.15 -3.14 5.08 -104.84 -0.53 -3.67 16 8 C -0.06 -1.10 7.30 -39.21 -0.29 -1.39 16 9 C -0.22 -3.75 10.03 -39.60 -0.40 -4.14 16 10 C -0.07 -1.28 10.03 -39.54 -0.40 -1.67 16 11 C -0.23 -5.08 9.16 -39.45 -0.36 -5.44 16 12 C 0.16 3.95 6.66 -38.68 -0.26 3.69 16 13 O -0.17 -4.69 9.21 0.44 0.00 -4.68 16 14 C -0.39 -10.86 9.49 30.88 0.29 -10.57 16 15 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 16 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 17 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 18 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.33 3.76 8.99 -39.29 -0.35 3.40 16 26 H 0.34 4.08 7.28 -39.29 -0.29 3.79 16 27 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.11 1.78 5.03 -52.48 -0.26 1.52 16 30 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 31 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 278.48 15.07 4.20 4.20 Total: -1.00 -29.29 278.48 -6.47 -35.76 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -3.81 Total: 12.32 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -2.54 Total: -27.92 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.71 Total: -34.91 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.68 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.29 -6.47 -35.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389667286.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.881 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds