Wall clock time and date at job start Mon Mar 30 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 14 14 C 1.38287 * 120.11797 * 80.00421 * 13 2 1 15 15 C 1.37935 * 120.35358 * 179.87053 * 14 13 2 16 16 C 1.39286 * 120.24166 * 0.04776 * 15 14 13 17 17 C 1.38884 * 118.87155 * 0.18149 * 16 15 14 18 18 C 1.37739 * 120.78677 * 359.38051 * 17 16 15 19 19 C 1.51643 * 107.03579 * 179.45738 * 17 16 15 20 20 C 1.54710 * 101.91865 * 344.49434 * 19 17 16 21 21 O 1.36129 * 129.88463 * 180.61293 * 16 15 14 22 22 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 23 23 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 26 26 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 27 27 H 1.08002 * 119.82536 * 359.84142 * 14 13 2 28 28 H 1.07998 * 119.87454 * 180.02562 * 15 14 13 29 29 H 1.08005 * 120.01321 * 180.55747 * 18 17 16 30 30 H 1.09004 * 110.93747 * 226.33705 * 19 17 16 31 31 H 1.08998 * 110.97530 * 102.66937 * 19 17 16 32 32 H 1.08995 * 110.75069 * 266.98836 * 20 19 17 33 33 H 1.09006 * 110.89894 * 143.71361 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 3.7294 1.3878 -4.9468 11 1 3.2759 -0.6541 -6.1744 12 1 1.4488 0.8028 -5.5277 13 6 2.0323 -0.7104 1.2304 14 6 2.0678 -2.0923 1.2679 15 6 2.5292 -2.7475 2.3906 16 6 2.9627 -2.0220 3.4977 17 6 2.9177 -0.6347 3.4499 18 6 2.4650 0.0176 2.3244 19 6 3.4318 -0.1273 4.7833 20 6 3.3645 -1.4019 5.6576 21 8 3.4596 -2.4587 4.6875 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 2.2490 -1.6318 -1.1527 26 1 3.2335 -2.3998 -4.2459 27 1 1.7322 -2.6616 0.4137 28 1 2.5540 -3.8270 2.4113 29 1 2.4438 1.0971 2.2975 30 1 2.7816 0.6523 5.1803 31 1 4.4574 0.2310 4.6952 32 1 2.4165 -1.4533 6.1930 33 1 4.2022 -1.4404 6.3541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393612114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:41 Heat of formation + Delta-G solvation = 1.958750 kcal Electronic energy + Delta-G solvation = -15852.029399 eV Core-core repulsion = 13264.253425 eV Total energy + Delta-G solvation = -2587.775974 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86693 -37.87318 -34.87148 -32.50770 -32.06157 -29.50712 -28.83410 -27.87388 -24.21314 -23.14582 -22.35770 -21.71081 -19.54502 -17.38612 -17.11490 -16.40682 -16.02750 -14.92745 -14.53092 -13.85985 -13.68560 -13.18125 -13.04642 -12.99733 -12.61760 -12.47875 -12.10977 -11.94886 -11.71737 -11.33192 -10.83002 -10.78308 -10.58684 -10.45685 -10.27677 -9.97806 -9.64541 -8.92884 -8.55966 -7.70485 -6.96369 -5.75528 -3.04234 1.62740 1.70839 3.40680 3.45233 3.49499 3.50571 4.02495 4.48684 4.58795 4.67886 4.93011 5.10470 5.33049 5.42800 5.45221 5.58966 5.68149 5.75238 5.78737 5.83791 5.95190 6.13907 6.29841 6.40697 6.51882 6.63337 6.65677 6.75967 6.92432 6.99815 7.20547 7.46253 7.70694 8.43005 9.54077 10.10458 10.45715 11.47219 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.045209 B = 0.005562 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.200842 B = 5033.254327 C = 5193.954885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.211 3.789 3 H 0.055 0.945 4 N -0.722 5.722 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.090 4.090 14 C -0.070 4.070 15 C -0.134 4.134 16 C 0.085 3.915 17 C -0.179 4.179 18 C -0.069 4.069 19 C -0.107 4.107 20 C 0.052 3.948 21 O -0.310 6.310 22 H 0.037 0.963 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.385 0.615 26 H 0.256 0.744 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 2.385 16.485 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.101 3.899 3 H 0.073 0.927 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.091 4.091 14 C -0.088 4.088 15 C -0.153 4.153 16 C 0.040 3.960 17 C -0.180 4.180 18 C -0.088 4.088 19 C -0.144 4.144 20 C -0.023 4.023 21 O -0.225 6.225 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.066 0.934 27 H 0.153 0.847 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.179 2.285 16.391 16.591 hybrid contribution 0.216 0.299 -0.870 0.945 sum -0.964 2.583 15.521 15.764 Atomic orbital electron populations 1.22423 0.98368 1.01137 1.00024 1.19129 0.91967 0.94835 0.83951 0.92741 1.42523 1.78248 1.10787 1.04849 1.19203 1.36853 0.93961 0.87043 0.91135 1.24733 1.02088 0.95984 0.98048 1.69651 1.50870 1.08639 1.28972 0.86263 0.77765 0.78592 0.83532 1.21284 1.21705 1.21268 1.20317 0.99099 0.93871 0.95803 1.20824 0.97113 0.94369 0.96539 1.20238 1.03321 0.99762 0.91986 1.19484 0.96556 0.92322 0.87599 1.20619 1.06472 0.93701 0.97185 1.20142 0.97871 0.99541 0.91247 1.21730 1.02332 0.98254 0.92114 1.23750 1.02607 0.84729 0.91196 1.86787 1.78024 1.39205 1.18468 0.94400 0.92463 0.93317 0.78016 0.93428 0.84652 0.85826 0.86095 0.89461 0.89517 0.90971 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.47 37.16 0.35 -2.57 16 2 C 0.21 4.28 3.10 -69.09 -0.21 4.07 16 3 H 0.05 1.11 7.95 -51.93 -0.41 0.70 16 4 N -0.72 -18.16 5.07 -54.55 -0.28 -18.44 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 9 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C -0.09 -1.64 4.96 -104.56 -0.52 -2.16 16 14 C -0.07 -1.27 9.03 -39.67 -0.36 -1.62 16 15 C -0.13 -2.23 10.06 -39.30 -0.40 -2.63 16 16 C 0.08 1.37 7.04 -38.95 -0.27 1.10 16 17 C -0.18 -2.69 6.27 -104.10 -0.65 -3.34 16 18 C -0.07 -1.12 9.66 -39.72 -0.38 -1.50 16 19 C -0.11 -1.17 7.12 -26.52 -0.19 -1.36 16 20 C 0.05 0.54 8.01 38.06 0.30 0.84 16 21 O -0.31 -4.58 11.10 -20.15 -0.22 -4.81 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.38 10.18 6.07 -40.82 -0.25 9.94 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.14 2.52 6.92 -52.49 -0.36 2.16 16 28 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.12 1.70 8.04 -52.48 -0.42 1.28 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 280.43 15.07 4.23 4.23 Total: -1.00 -31.17 280.43 -7.52 -38.69 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.37 Total: 6.86 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.57 Total: -16.41 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.45 Total: -45.92 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.22 Total: -4.81 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.17 -7.52 -38.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393612114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.647 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds