Wall clock time and date at job start Mon Mar 30 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 14 14 C 1.38287 * 120.11797 * 80.00421 * 13 2 1 15 15 C 1.37935 * 120.35358 * 179.87053 * 14 13 2 16 16 C 1.39286 * 120.24166 * 0.04776 * 15 14 13 17 17 C 1.38884 * 118.87155 * 0.18149 * 16 15 14 18 18 C 1.37739 * 120.78677 * 359.38051 * 17 16 15 19 19 C 1.51643 * 107.03579 * 179.45738 * 17 16 15 20 20 C 1.54710 * 101.91865 * 344.49434 * 19 17 16 21 21 O 1.36129 * 129.88463 * 180.61293 * 16 15 14 22 22 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 23 23 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 26 26 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 27 27 H 1.08002 * 119.82536 * 359.84142 * 14 13 2 28 28 H 1.07998 * 119.87454 * 180.02562 * 15 14 13 29 29 H 1.08005 * 120.01321 * 180.55747 * 18 17 16 30 30 H 1.09004 * 110.93747 * 226.33705 * 19 17 16 31 31 H 1.08998 * 110.97530 * 102.66937 * 19 17 16 32 32 H 1.08995 * 110.75069 * 266.98836 * 20 19 17 33 33 H 1.09006 * 110.89894 * 143.71361 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 3.7294 1.3878 -4.9468 11 1 3.2759 -0.6541 -6.1744 12 1 1.4488 0.8028 -5.5277 13 6 2.0323 -0.7104 1.2304 14 6 2.0678 -2.0923 1.2679 15 6 2.5292 -2.7475 2.3906 16 6 2.9627 -2.0220 3.4977 17 6 2.9177 -0.6347 3.4499 18 6 2.4650 0.0176 2.3244 19 6 3.4318 -0.1273 4.7833 20 6 3.3645 -1.4019 5.6576 21 8 3.4596 -2.4587 4.6875 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 2.2490 -1.6318 -1.1527 26 1 3.2335 -2.3998 -4.2459 27 1 1.7322 -2.6616 0.4137 28 1 2.5540 -3.8270 2.4113 29 1 2.4438 1.0971 2.2975 30 1 2.7816 0.6523 5.1803 31 1 4.4574 0.2310 4.6952 32 1 2.4165 -1.4533 6.1930 33 1 4.2022 -1.4404 6.3541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393612114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:41 Heat of formation + Delta-G solvation = -17.166086 kcal Electronic energy + Delta-G solvation = -15852.858714 eV Core-core repulsion = 13264.253425 eV Total energy + Delta-G solvation = -2588.605289 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.98512 -39.21693 -36.54879 -33.99335 -33.54372 -31.10624 -30.03965 -29.38551 -26.06350 -24.28996 -23.86312 -22.84534 -20.98440 -19.34696 -18.29589 -17.59700 -17.06950 -16.52711 -16.33312 -15.35778 -15.07011 -14.75425 -14.48005 -14.10272 -13.99176 -13.76136 -13.48081 -13.34226 -13.03764 -12.73306 -12.58036 -12.49449 -12.21953 -11.92206 -11.66432 -11.56726 -11.50050 -10.95958 -9.80693 -9.05183 -8.92134 -7.92044 -5.20771 0.36363 0.41667 1.48538 1.51726 1.57605 2.37066 2.57430 2.75883 3.42186 3.50108 3.70303 3.95798 4.03717 4.09184 4.22125 4.28295 4.46680 4.56260 4.64066 4.69467 4.78583 4.91767 4.94938 4.99585 5.11081 5.19738 5.33867 5.41215 5.51364 5.52536 5.67777 5.79024 6.27253 6.29926 7.35922 8.10863 8.35131 9.31616 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.045209 B = 0.005562 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.200842 B = 5033.254327 C = 5193.954885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.207 3.793 3 H 0.056 0.944 4 N -0.736 5.736 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.077 4.077 8 N -0.972 5.972 9 Si 0.973 3.027 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.277 1.277 13 C -0.109 4.109 14 C -0.086 4.086 15 C -0.146 4.146 16 C 0.079 3.921 17 C -0.178 4.178 18 C -0.071 4.071 19 C -0.103 4.103 20 C 0.046 3.954 21 O -0.326 6.326 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.374 0.626 26 H 0.250 0.750 27 H 0.117 0.883 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 4.090 18.536 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.100 3.900 3 H 0.074 0.926 4 N -0.377 5.377 5 C -0.371 4.371 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.623 5.623 9 Si 0.802 3.198 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.203 1.203 13 C -0.109 4.109 14 C -0.104 4.104 15 C -0.164 4.164 16 C 0.034 3.966 17 C -0.179 4.179 18 C -0.089 4.089 19 C -0.140 4.140 20 C -0.028 4.028 21 O -0.241 6.241 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.207 0.793 26 H 0.059 0.941 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.077 4.031 18.491 18.956 hybrid contribution 0.177 -0.222 -1.317 1.348 sum -0.900 3.809 17.174 17.614 Atomic orbital electron populations 1.22260 0.96754 1.00914 1.00914 1.19292 0.92974 0.94535 0.83244 0.92610 1.42740 1.78560 1.10512 1.05882 1.19627 1.35119 0.94362 0.88021 0.90356 1.25552 1.02957 0.96869 1.01470 1.69822 1.52768 1.10273 1.29418 0.85211 0.77995 0.77261 0.79296 1.20417 1.22384 1.20301 1.20160 1.00915 0.93910 0.95963 1.20698 0.98488 0.94547 0.96684 1.20326 1.03572 1.00456 0.92089 1.19658 0.95952 0.92983 0.87998 1.21078 1.04925 0.93466 0.98450 1.20321 0.97204 1.00551 0.90814 1.21875 1.03365 0.99178 0.89540 1.24153 1.05025 0.83049 0.90586 1.86774 1.77645 1.41215 1.18505 0.91205 0.93713 0.94118 0.79311 0.94105 0.86553 0.84904 0.83941 0.86714 0.88331 0.89260 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.47 71.98 0.68 -4.69 16 2 C 0.21 8.43 3.10 44.24 0.14 8.56 16 3 H 0.06 2.23 7.95 -2.39 -0.02 2.21 16 4 N -0.74 -37.85 5.07 -326.51 -1.66 -39.51 16 5 C -0.24 -13.40 9.93 84.03 0.83 -12.57 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 8 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 9 Si 0.97 46.50 29.55 68.60 2.03 48.52 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C -0.11 -3.96 4.96 -19.83 -0.10 -4.05 16 14 C -0.09 -3.18 9.03 22.21 0.20 -2.98 16 15 C -0.15 -4.87 10.06 22.45 0.23 -4.65 16 16 C 0.08 2.44 7.04 22.68 0.16 2.60 16 17 C -0.18 -4.92 6.27 -19.53 -0.12 -5.04 16 18 C -0.07 -2.14 9.66 22.18 0.21 -1.93 16 19 C -0.10 -1.82 7.12 30.73 0.22 -1.60 16 20 C 0.05 0.76 8.01 72.56 0.58 1.34 16 21 O -0.33 -8.89 11.10 -95.01 -1.05 -9.94 16 22 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.37 20.64 6.07 -92.71 -0.56 20.07 16 26 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.12 4.66 6.92 -2.91 -0.02 4.64 16 28 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 29 H 0.14 3.61 8.04 -2.91 -0.02 3.59 16 30 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -67.69 280.43 3.64 -64.05 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.54 Total: 26.00 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.50 Total: -28.98 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -1.37 Total: -99.65 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -67.69 3.64 -64.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393612114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.887 kcal (2) G-P(sol) polarization free energy of solvation -67.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds