Wall clock time and date at job start Mon Mar 30 2020 03:29:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 109.47098 * 2 1
4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3
5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1
6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2
7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2
8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4
9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5
11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5
12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5
13 13 C 1.50696 * 109.47087 * 120.00096 * 2 1 3
14 14 C 1.38287 * 120.11797 * 80.00421 * 13 2 1
15 15 C 1.37935 * 120.35358 * 179.87053 * 14 13 2
16 16 C 1.39286 * 120.24166 * 0.04776 * 15 14 13
17 17 C 1.38884 * 118.87155 * 0.18149 * 16 15 14
18 18 C 1.37739 * 120.78677 * 359.38051 * 17 16 15
19 19 C 1.51643 * 107.03579 * 179.45738 * 17 16 15
20 20 C 1.54710 * 101.91865 * 344.49434 * 19 17 16
21 21 O 1.36129 * 129.88463 * 180.61293 * 16 15 14
22 22 H 1.09003 * 109.47054 * 299.99648 * 1 2 3
23 23 H 1.08996 * 109.47245 * 59.99861 * 1 2 3
24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3
25 25 H 0.97001 * 120.00384 * 265.00562 * 4 2 1
26 26 H 0.96999 * 119.99739 * 180.02562 * 8 7 5
27 27 H 1.08002 * 119.82536 * 359.84142 * 14 13 2
28 28 H 1.07998 * 119.87454 * 180.02562 * 15 14 13
29 29 H 1.08005 * 120.01321 * 180.55747 * 18 17 16
30 30 H 1.09004 * 110.93747 * 226.33705 * 19 17 16
31 31 H 1.08998 * 110.97530 * 102.66937 * 19 17 16
32 32 H 1.08995 * 110.75069 * 266.98836 * 20 19 17
33 33 H 1.09006 * 110.89894 * 143.71361 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0184 -0.6906 -1.1962
5 6 2.1437 -0.0088 -2.3771
6 1 1.8868 1.0391 -2.4256
7 6 2.6010 -0.6645 -3.5120
8 7 2.9136 -1.9417 -3.4530
9 14 2.7727 0.2657 -5.1227
10 1 3.7294 1.3878 -4.9468
11 1 3.2759 -0.6541 -6.1744
12 1 1.4488 0.8028 -5.5277
13 6 2.0323 -0.7104 1.2304
14 6 2.0678 -2.0923 1.2679
15 6 2.5292 -2.7475 2.3906
16 6 2.9627 -2.0220 3.4977
17 6 2.9177 -0.6347 3.4499
18 6 2.4650 0.0176 2.3244
19 6 3.4318 -0.1273 4.7833
20 6 3.3645 -1.4019 5.6576
21 8 3.4596 -2.4587 4.6875
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 2.2490 -1.6318 -1.1527
26 1 3.2335 -2.3998 -4.2459
27 1 1.7322 -2.6616 0.4137
28 1 2.5540 -3.8270 2.4113
29 1 2.4438 1.0971 2.2975
30 1 2.7816 0.6523 5.1803
31 1 4.4574 0.2310 4.6952
32 1 2.4165 -1.4533 6.1930
33 1 4.2022 -1.4404 6.3541
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000393612114.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:41
Heat of formation + Delta-G solvation = -17.166086 kcal
Electronic energy + Delta-G solvation = -15852.858714 eV
Core-core repulsion = 13264.253425 eV
Total energy + Delta-G solvation = -2588.605289 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 233.116 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.98512 -39.21693 -36.54879 -33.99335 -33.54372 -31.10624 -30.03965 -29.38551
-26.06350 -24.28996 -23.86312 -22.84534 -20.98440 -19.34696 -18.29589 -17.59700
-17.06950 -16.52711 -16.33312 -15.35778 -15.07011 -14.75425 -14.48005 -14.10272
-13.99176 -13.76136 -13.48081 -13.34226 -13.03764 -12.73306 -12.58036 -12.49449
-12.21953 -11.92206 -11.66432 -11.56726 -11.50050 -10.95958 -9.80693 -9.05183
-8.92134 -7.92044 -5.20771 0.36363 0.41667 1.48538 1.51726 1.57605
2.37066 2.57430 2.75883 3.42186 3.50108 3.70303 3.95798 4.03717
4.09184 4.22125 4.28295 4.46680 4.56260 4.64066 4.69467 4.78583
4.91767 4.94938 4.99585 5.11081 5.19738 5.33867 5.41215 5.51364
5.52536 5.67777 5.79024 6.27253 6.29926 7.35922 8.10863 8.35131
9.31616
Molecular weight = 233.12amu
Principal moments of inertia in cm(-1)
A = 0.045209 B = 0.005562 C = 0.005390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 619.200842 B = 5033.254327 C = 5193.954885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.207 3.793
3 H 0.056 0.944
4 N -0.736 5.736
5 C -0.240 4.240
6 H 0.079 0.921
7 C -0.077 4.077
8 N -0.972 5.972
9 Si 0.973 3.027
10 H -0.278 1.278
11 H -0.297 1.297
12 H -0.277 1.277
13 C -0.109 4.109
14 C -0.086 4.086
15 C -0.146 4.146
16 C 0.079 3.921
17 C -0.178 4.178
18 C -0.071 4.071
19 C -0.103 4.103
20 C 0.046 3.954
21 O -0.326 6.326
22 H 0.069 0.931
23 H 0.044 0.956
24 H 0.040 0.960
25 H 0.374 0.626
26 H 0.250 0.750
27 H 0.117 0.883
28 H 0.133 0.867
29 H 0.143 0.857
30 H 0.115 0.885
31 H 0.098 0.902
32 H 0.089 0.911
33 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.171 4.090 18.536 19.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.100 3.900
3 H 0.074 0.926
4 N -0.377 5.377
5 C -0.371 4.371
6 H 0.096 0.904
7 C -0.268 4.268
8 N -0.623 5.623
9 Si 0.802 3.198
10 H -0.204 1.204
11 H -0.224 1.224
12 H -0.203 1.203
13 C -0.109 4.109
14 C -0.104 4.104
15 C -0.164 4.164
16 C 0.034 3.966
17 C -0.179 4.179
18 C -0.089 4.089
19 C -0.140 4.140
20 C -0.028 4.028
21 O -0.241 6.241
22 H 0.088 0.912
23 H 0.063 0.937
24 H 0.059 0.941
25 H 0.207 0.793
26 H 0.059 0.941
27 H 0.134 0.866
28 H 0.151 0.849
29 H 0.161 0.839
30 H 0.133 0.867
31 H 0.117 0.883
32 H 0.107 0.893
33 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -1.077 4.031 18.491 18.956
hybrid contribution 0.177 -0.222 -1.317 1.348
sum -0.900 3.809 17.174 17.614
Atomic orbital electron populations
1.22260 0.96754 1.00914 1.00914 1.19292 0.92974 0.94535 0.83244
0.92610 1.42740 1.78560 1.10512 1.05882 1.19627 1.35119 0.94362
0.88021 0.90356 1.25552 1.02957 0.96869 1.01470 1.69822 1.52768
1.10273 1.29418 0.85211 0.77995 0.77261 0.79296 1.20417 1.22384
1.20301 1.20160 1.00915 0.93910 0.95963 1.20698 0.98488 0.94547
0.96684 1.20326 1.03572 1.00456 0.92089 1.19658 0.95952 0.92983
0.87998 1.21078 1.04925 0.93466 0.98450 1.20321 0.97204 1.00551
0.90814 1.21875 1.03365 0.99178 0.89540 1.24153 1.05025 0.83049
0.90586 1.86774 1.77645 1.41215 1.18505 0.91205 0.93713 0.94118
0.79311 0.94105 0.86553 0.84904 0.83941 0.86714 0.88331 0.89260
0.85063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.38 9.47 71.98 0.68 -4.69 16
2 C 0.21 8.43 3.10 44.24 0.14 8.56 16
3 H 0.06 2.23 7.95 -2.39 -0.02 2.21 16
4 N -0.74 -37.85 5.07 -326.51 -1.66 -39.51 16
5 C -0.24 -13.40 9.93 84.03 0.83 -12.57 16
6 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16
7 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16
8 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16
9 Si 0.97 46.50 29.55 68.60 2.03 48.52 16
10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
11 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16
12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
13 C -0.11 -3.96 4.96 -19.83 -0.10 -4.05 16
14 C -0.09 -3.18 9.03 22.21 0.20 -2.98 16
15 C -0.15 -4.87 10.06 22.45 0.23 -4.65 16
16 C 0.08 2.44 7.04 22.68 0.16 2.60 16
17 C -0.18 -4.92 6.27 -19.53 -0.12 -5.04 16
18 C -0.07 -2.14 9.66 22.18 0.21 -1.93 16
19 C -0.10 -1.82 7.12 30.73 0.22 -1.60 16
20 C 0.05 0.76 8.01 72.56 0.58 1.34 16
21 O -0.33 -8.89 11.10 -95.01 -1.05 -9.94 16
22 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16
23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16
24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
25 H 0.37 20.64 6.07 -92.71 -0.56 20.07 16
26 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16
27 H 0.12 4.66 6.92 -2.91 -0.02 4.64 16
28 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16
29 H 0.14 3.61 8.04 -2.91 -0.02 3.59 16
30 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16
31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16
Total: -1.00 -67.69 280.43 3.64 -64.05
By element:
Atomic # 1 Polarization: 25.45 SS G_CDS: 0.54 Total: 26.00 kcal
Atomic # 6 Polarization: -32.48 SS G_CDS: 3.50 Total: -28.98 kcal
Atomic # 7 Polarization: -98.28 SS G_CDS: -1.37 Total: -99.65 kcal
Atomic # 8 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal
Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal
Total: -67.69 3.64 -64.05 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393612114.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.887 kcal
(2) G-P(sol) polarization free energy of solvation -67.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds