Wall clock time and date at job start Mon Mar 30 2020 03:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00288 * 2 1 4 4 C 1.38863 * 120.09546 * 359.71904 * 3 2 1 5 5 C 1.38073 * 120.13097 * 179.83967 * 4 3 2 6 6 C 1.38485 * 120.39385 * 0.51184 * 5 4 3 7 7 C 1.38822 * 119.64287 * 359.61737 * 6 5 4 8 8 C 1.38454 * 120.09765 * 180.02562 * 3 2 1 9 9 N 1.39540 * 120.85897 * 180.42853 * 7 6 5 10 10 C 1.36853 * 120.52318 * 166.33057 * 9 7 6 11 11 H 1.07993 * 120.00198 * 333.23183 * 10 9 7 12 12 C 1.38799 * 120.00010 * 153.22270 * 10 9 7 13 13 N 1.31595 * 119.99731 * 345.09799 * 12 10 9 14 14 Si 1.86788 * 119.99953 * 165.09278 * 12 10 9 15 15 H 1.48498 * 109.47169 * 60.00107 * 14 12 10 16 16 H 1.48502 * 109.47347 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47215 * 300.00549 * 14 12 10 18 18 C 1.46916 * 118.95883 * 346.35899 * 9 7 6 19 19 C 1.53426 * 107.80801 * 44.77979 * 18 9 7 20 20 C 1.50612 * 118.89208 * 179.51962 * 6 5 4 21 21 H 1.08998 * 109.47025 * 300.00470 * 1 2 3 22 22 H 1.08998 * 109.47268 * 60.00131 * 1 2 3 23 23 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.93303 * 0.07092 * 4 3 2 25 25 H 1.07999 * 119.79935 * 180.26515 * 5 4 3 26 26 H 1.07999 * 120.01447 * 359.97438 * 8 3 2 27 27 H 0.97002 * 119.99526 * 185.21353 * 13 12 10 28 28 H 1.09003 * 109.78983 * 285.20806 * 18 9 7 29 29 H 1.08998 * 109.84258 * 164.38930 * 18 9 7 30 30 H 1.09002 * 109.57239 * 177.00286 * 19 18 9 31 31 H 1.08995 * 109.57410 * 56.61942 * 19 18 9 32 32 H 1.09003 * 109.30292 * 279.79919 * 20 6 5 33 33 H 1.09001 * 109.30612 * 39.38361 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3767 -0.0059 5 6 1.9178 3.6073 -0.0026 6 6 3.3002 3.6901 -0.0040 7 6 4.0577 2.5268 -0.0008 8 6 3.4285 1.2856 -0.0005 9 7 5.4521 2.5806 0.0068 10 6 6.1893 1.4626 0.2886 11 1 5.7708 0.6810 0.9052 12 6 7.4749 1.3331 -0.2183 13 7 7.8808 2.1203 -1.1916 14 14 8.6290 0.0418 0.4813 15 1 8.0334 -1.3061 0.2974 16 1 9.9331 0.1079 -0.2259 17 1 8.8381 0.2970 1.9293 18 6 6.1163 3.8566 -0.2918 19 6 5.3889 4.9584 0.4898 20 6 3.9478 5.0499 -0.0113 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.2131 2.3208 -0.0093 25 1 1.3259 4.5107 -0.0028 26 1 4.0185 0.3809 -0.0005 27 1 8.7508 1.9809 -1.5972 28 1 6.0574 4.0620 -1.3606 29 1 7.1602 3.8117 0.0184 30 1 5.8922 5.9121 0.3306 31 1 5.3914 4.7149 1.5522 32 1 3.9439 5.4454 -1.0270 33 1 3.3853 5.7204 0.6385 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595816185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:47 Heat of formation + Delta-G solvation = -8.098270 kcal Electronic energy + Delta-G solvation = -16410.578950 eV Core-core repulsion = 13822.366871 eV Total energy + Delta-G solvation = -2588.212079 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.44113 -37.99699 -35.10045 -33.36668 -31.65717 -28.99972 -28.67439 -26.59510 -25.56958 -23.28491 -21.86483 -21.14970 -18.78891 -17.57790 -16.79494 -15.36610 -15.15805 -15.09827 -14.88191 -14.11878 -13.61339 -13.49199 -12.77870 -12.58425 -12.48993 -12.07210 -11.89982 -11.66637 -11.40510 -11.10072 -11.05969 -10.64960 -10.38205 -10.28005 -9.90751 -9.86709 -9.59289 -9.16151 -8.52063 -7.26005 -6.56294 -6.36546 -3.75525 2.49905 2.62704 3.19064 3.19440 3.22127 3.92682 4.09328 4.69990 5.01879 5.07449 5.44974 5.52898 5.61520 5.73473 5.78292 5.86976 5.90004 6.07074 6.29033 6.37803 6.53039 6.54386 6.63263 6.78987 6.96106 7.13614 7.24680 7.34752 7.39021 7.40783 7.59880 7.65912 8.06725 8.37290 8.66626 9.29741 9.66801 10.64309 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.009472 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.979987 B = 2955.375593 C = 3992.104149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.326 6.326 3 C 0.161 3.839 4 C -0.316 4.316 5 C -0.036 4.036 6 C -0.225 4.225 7 C 0.244 3.756 8 C -0.239 4.239 9 N -0.442 5.442 10 C -0.303 4.303 11 H 0.094 0.906 12 C 0.028 3.972 13 N -0.876 5.876 14 Si 0.925 3.075 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.147 3.853 19 C -0.144 4.144 20 C -0.054 4.054 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.271 0.729 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 2.088 2.011 7.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.240 6.240 3 C 0.116 3.884 4 C -0.338 4.338 5 C -0.055 4.055 6 C -0.231 4.231 7 C 0.126 3.874 8 C -0.264 4.264 9 N -0.128 5.128 10 C -0.431 4.431 11 H 0.111 0.889 12 C -0.176 4.176 13 N -0.512 5.512 14 Si 0.752 3.248 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.198 1.198 18 C 0.023 3.977 19 C -0.183 4.183 20 C -0.091 4.091 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.105 0.895 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.141 0.859 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.741 1.985 1.927 7.287 hybrid contribution 0.285 -0.524 0.155 0.616 sum -6.456 1.461 2.081 6.939 Atomic orbital electron populations 1.22833 0.79977 1.02379 1.00832 1.85999 1.20119 1.28523 1.89379 1.18614 0.91733 0.82941 0.95147 1.20369 0.97921 0.92385 1.23156 1.20242 0.93030 0.95814 0.96465 1.18931 0.92973 0.93274 1.17908 1.17398 0.84373 0.91710 0.93876 1.19673 0.90523 0.97434 1.18759 1.42732 1.00153 1.08319 1.61612 1.19536 0.95633 0.99225 1.28698 0.88879 1.25389 0.98535 0.98317 0.95352 1.69992 1.21290 1.38130 1.21764 0.86000 0.79125 0.80627 0.79076 1.19697 1.20837 1.19830 1.21425 0.97082 0.81462 0.97740 1.22028 0.96284 0.99281 1.00673 1.20069 0.95130 0.94068 0.99853 0.93356 0.93322 0.89483 0.87830 0.87946 0.85872 0.91926 0.93030 0.89216 0.91996 0.92145 0.92682 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 9.81 101.05 0.99 1.48 16 2 O -0.33 -6.36 10.50 -19.41 -0.20 -6.56 16 3 C 0.16 3.46 6.68 -39.27 -0.26 3.20 16 4 C -0.32 -6.16 9.04 -39.41 -0.36 -6.51 16 5 C -0.04 -0.70 9.65 -39.55 -0.38 -1.09 16 6 C -0.22 -4.83 5.76 -104.36 -0.60 -5.44 16 7 C 0.24 5.95 6.32 -83.79 -0.53 5.42 16 8 C -0.24 -5.76 9.13 -39.16 -0.36 -6.12 16 9 N -0.44 -11.30 2.98 -112.56 -0.34 -11.64 16 10 C -0.30 -8.05 8.64 -15.10 -0.13 -8.18 16 11 H 0.09 2.46 6.87 -52.49 -0.36 2.09 16 12 C 0.03 0.73 4.97 -17.45 -0.09 0.65 16 13 N -0.88 -23.34 11.15 55.49 0.62 -22.72 16 14 Si 0.93 20.17 29.58 -169.99 -5.03 15.14 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 18 C 0.15 3.41 4.97 -3.59 -0.02 3.39 16 19 C -0.14 -2.77 6.11 -26.59 -0.16 -2.93 16 20 C -0.05 -1.00 5.78 -28.00 -0.16 -1.16 16 21 H 0.05 0.61 7.67 -51.93 -0.40 0.22 16 22 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.10 1.72 6.30 -52.48 -0.33 1.39 16 25 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 26 H 0.12 3.10 6.58 -52.49 -0.35 2.75 16 27 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 28 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.09 2.21 6.45 -51.93 -0.33 1.87 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.90 8.12 -51.93 -0.42 0.47 16 LS Contribution 269.14 15.07 4.06 4.06 Total: -1.00 -28.41 269.14 -7.21 -35.62 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.26 Total: 3.38 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.06 Total: -17.28 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.28 Total: -34.36 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.20 Total: -6.56 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.41 -7.21 -35.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595816185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.526 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds