Wall clock time and date at job start Mon Mar 30 2020 03:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00288 * 2 1 4 4 C 1.38863 * 120.09546 * 359.71904 * 3 2 1 5 5 C 1.38073 * 120.13097 * 179.83967 * 4 3 2 6 6 C 1.38485 * 120.39385 * 0.51184 * 5 4 3 7 7 C 1.38822 * 119.64287 * 359.61737 * 6 5 4 8 8 C 1.38454 * 120.09765 * 180.02562 * 3 2 1 9 9 N 1.39540 * 120.85897 * 180.42853 * 7 6 5 10 10 C 1.36853 * 120.52318 * 166.33057 * 9 7 6 11 11 H 1.07993 * 120.00198 * 333.23183 * 10 9 7 12 12 C 1.38799 * 120.00010 * 153.22270 * 10 9 7 13 13 N 1.31595 * 119.99731 * 345.09799 * 12 10 9 14 14 Si 1.86788 * 119.99953 * 165.09278 * 12 10 9 15 15 H 1.48498 * 109.47169 * 60.00107 * 14 12 10 16 16 H 1.48502 * 109.47347 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47215 * 300.00549 * 14 12 10 18 18 C 1.46916 * 118.95883 * 346.35899 * 9 7 6 19 19 C 1.53426 * 107.80801 * 44.77979 * 18 9 7 20 20 C 1.50612 * 118.89208 * 179.51962 * 6 5 4 21 21 H 1.08998 * 109.47025 * 300.00470 * 1 2 3 22 22 H 1.08998 * 109.47268 * 60.00131 * 1 2 3 23 23 H 1.08998 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.93303 * 0.07092 * 4 3 2 25 25 H 1.07999 * 119.79935 * 180.26515 * 5 4 3 26 26 H 1.07999 * 120.01447 * 359.97438 * 8 3 2 27 27 H 0.97002 * 119.99526 * 185.21353 * 13 12 10 28 28 H 1.09003 * 109.78983 * 285.20806 * 18 9 7 29 29 H 1.08998 * 109.84258 * 164.38930 * 18 9 7 30 30 H 1.09002 * 109.57239 * 177.00286 * 19 18 9 31 31 H 1.08995 * 109.57410 * 56.61942 * 19 18 9 32 32 H 1.09003 * 109.30292 * 279.79919 * 20 6 5 33 33 H 1.09001 * 109.30612 * 39.38361 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3767 -0.0059 5 6 1.9178 3.6073 -0.0026 6 6 3.3002 3.6901 -0.0040 7 6 4.0577 2.5268 -0.0008 8 6 3.4285 1.2856 -0.0005 9 7 5.4521 2.5806 0.0068 10 6 6.1893 1.4626 0.2886 11 1 5.7708 0.6810 0.9052 12 6 7.4749 1.3331 -0.2183 13 7 7.8808 2.1203 -1.1916 14 14 8.6290 0.0418 0.4813 15 1 8.0334 -1.3061 0.2974 16 1 9.9331 0.1079 -0.2259 17 1 8.8381 0.2970 1.9293 18 6 6.1163 3.8566 -0.2918 19 6 5.3889 4.9584 0.4898 20 6 3.9478 5.0499 -0.0113 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.2131 2.3208 -0.0093 25 1 1.3259 4.5107 -0.0028 26 1 4.0185 0.3809 -0.0005 27 1 8.7508 1.9809 -1.5972 28 1 6.0574 4.0620 -1.3606 29 1 7.1602 3.8117 0.0184 30 1 5.8922 5.9121 0.3306 31 1 5.3914 4.7149 1.5522 32 1 3.9439 5.4454 -1.0270 33 1 3.3853 5.7204 0.6385 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595816185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:46 Heat of formation + Delta-G solvation = -24.288875 kcal Electronic energy + Delta-G solvation = -16411.281027 eV Core-core repulsion = 13822.366871 eV Total energy + Delta-G solvation = -2588.914156 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07505 -39.57504 -36.79796 -35.02471 -33.49407 -30.56780 -30.35695 -28.00835 -27.29255 -25.00873 -23.47206 -22.87253 -20.38093 -19.30124 -18.53892 -17.10943 -16.82133 -16.52504 -16.39384 -15.83661 -15.28458 -15.08786 -14.42729 -14.22934 -14.08919 -13.66892 -13.52009 -13.16020 -12.96389 -12.78956 -12.67071 -12.31963 -12.11161 -11.83863 -11.46504 -11.42790 -11.27936 -10.96840 -10.32565 -8.93414 -8.41732 -8.22224 -5.74390 0.82395 0.94844 1.38270 1.45016 1.48946 2.24960 2.55481 2.87811 3.26645 3.29182 4.06893 4.24134 4.27387 4.33417 4.45059 4.49259 4.51714 4.71310 4.76544 4.79057 4.98135 5.03956 5.08099 5.13219 5.25150 5.37305 5.41706 5.51460 5.68652 5.72685 5.93628 5.99830 6.24050 6.76161 6.80786 7.44564 7.77792 8.71770 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.009472 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.979987 B = 2955.375593 C = 3992.104149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.349 6.349 3 C 0.158 3.842 4 C -0.301 4.301 5 C -0.031 4.031 6 C -0.237 4.237 7 C 0.221 3.779 8 C -0.275 4.275 9 N -0.472 5.472 10 C -0.324 4.324 11 H 0.079 0.921 12 C -0.015 4.015 13 N -0.906 5.906 14 Si 0.988 3.012 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.267 1.267 18 C 0.153 3.847 19 C -0.134 4.134 20 C -0.051 4.051 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.116 0.884 24 H 0.142 0.858 25 H 0.147 0.853 26 H 0.092 0.908 27 H 0.271 0.729 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 3.296 2.545 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.263 6.263 3 C 0.112 3.888 4 C -0.323 4.323 5 C -0.050 4.050 6 C -0.242 4.242 7 C 0.106 3.894 8 C -0.300 4.300 9 N -0.162 5.162 10 C -0.452 4.452 11 H 0.096 0.904 12 C -0.216 4.216 13 N -0.544 5.544 14 Si 0.812 3.188 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.192 1.192 18 C 0.030 3.970 19 C -0.172 4.172 20 C -0.088 4.088 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.134 0.866 24 H 0.160 0.840 25 H 0.165 0.835 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.328 3.193 2.468 10.163 hybrid contribution 0.750 -0.945 -0.024 1.207 sum -8.578 2.248 2.443 9.198 Atomic orbital electron populations 1.23252 0.76718 1.04952 1.02130 1.85979 1.23454 1.27833 1.89020 1.18714 0.91048 0.84632 0.94372 1.20848 0.99767 0.91473 1.20190 1.20758 0.92406 0.97529 0.94307 1.19428 0.94111 0.93655 1.17046 1.17881 0.84387 0.93032 0.94105 1.19712 0.92146 0.96660 1.21528 1.42846 1.00744 1.08573 1.64042 1.19611 0.96575 0.99876 1.29148 0.90368 1.26146 0.99537 1.00379 0.95526 1.70101 1.21604 1.39677 1.23014 0.85054 0.77188 0.78036 0.78529 1.19727 1.20089 1.19237 1.21265 0.96459 0.82397 0.96887 1.21963 0.96964 0.98951 0.99348 1.20137 0.94452 0.92982 1.01271 0.91832 0.91971 0.86610 0.84023 0.83512 0.88941 0.92003 0.95339 0.91589 0.88794 0.92905 0.91600 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.69 16 2 O -0.35 -13.18 10.50 -92.38 -0.97 -14.15 16 3 C 0.16 6.66 6.68 22.47 0.15 6.81 16 4 C -0.30 -10.63 9.04 22.38 0.20 -10.43 16 5 C -0.03 -1.08 9.65 22.29 0.22 -0.87 16 6 C -0.24 -9.74 5.76 -19.69 -0.11 -9.85 16 7 C 0.22 11.00 6.32 38.28 0.24 11.24 16 8 C -0.28 -13.78 9.13 22.54 0.21 -13.58 16 9 N -0.47 -25.30 2.98 -510.02 -1.52 -26.82 16 10 C -0.32 -18.29 8.64 84.04 0.73 -17.56 16 11 H 0.08 4.47 6.87 -2.91 -0.02 4.45 16 12 C -0.02 -0.83 4.97 84.86 0.42 -0.41 16 13 N -0.91 -50.67 11.15 21.65 0.24 -50.43 16 14 Si 0.99 43.11 29.58 68.60 2.03 45.13 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 C 0.15 7.40 4.97 86.44 0.43 7.83 16 19 C -0.13 -5.00 6.11 30.69 0.19 -4.81 16 20 C -0.05 -1.76 5.78 29.77 0.17 -1.58 16 21 H 0.06 1.36 7.67 -2.39 -0.02 1.34 16 22 H 0.06 1.35 7.65 -2.39 -0.02 1.33 16 23 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.14 3.91 6.30 -2.91 -0.02 3.89 16 25 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 26 H 0.09 5.05 6.58 -2.91 -0.02 5.03 16 27 H 0.27 14.28 8.32 -92.71 -0.77 13.51 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 3.42 6.45 -2.39 -0.02 3.40 16 30 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 Total: -1.00 -65.36 269.14 4.83 -60.52 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.10 Total: 17.26 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.95 Total: -31.52 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.28 Total: -77.25 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.97 Total: -14.15 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.36 4.83 -60.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595816185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.236 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds