Wall clock time and date at job start Mon Mar 30 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47414 * 297.97611 * 3 2 1 5 5 C 1.37101 * 119.99934 * 96.07772 * 4 3 2 6 6 H 1.07999 * 119.99843 * 159.27797 * 5 4 3 7 7 C 1.38942 * 120.00080 * 339.27108 * 5 4 3 8 8 N 1.31417 * 120.00234 * 349.31780 * 7 5 4 9 9 Si 1.86800 * 120.00195 * 169.31056 * 7 5 4 10 10 H 1.48507 * 109.46886 * 60.00617 * 9 7 5 11 11 H 1.48503 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47364 * 300.00714 * 9 7 5 13 13 C 1.34782 * 120.00352 * 276.08188 * 4 3 2 14 14 O 1.21288 * 120.00083 * 185.80080 * 13 4 3 15 15 C 1.50701 * 119.99576 * 5.79809 * 13 4 3 16 16 H 1.09006 * 110.67375 * 37.92528 * 15 13 4 17 17 C 1.54893 * 110.91388 * 161.27369 * 15 13 4 18 18 C 1.54265 * 104.19480 * 156.33082 * 17 15 13 19 19 H 1.08998 * 117.41481 * 116.37294 * 18 17 15 20 20 C 1.52997 * 118.19730 * 272.20823 * 18 17 15 21 21 C 1.52997 * 60.37887 * 93.61964 * 20 18 17 22 22 H 1.08998 * 119.75453 * 111.12435 * 21 20 18 23 23 C 1.54268 * 118.19848 * 266.38501 * 21 20 18 24 24 H 4.40639 * 5.51287 * 179.97438 * 4 1 2 25 25 H 1.09009 * 109.46600 * 177.97944 * 3 2 1 26 26 H 1.08995 * 109.47544 * 57.98005 * 3 2 1 27 27 H 0.97001 * 120.00456 * 179.97438 * 8 7 5 28 28 H 1.09000 * 110.48039 * 275.00856 * 17 15 13 29 29 H 1.08998 * 110.48914 * 37.64835 * 17 15 13 30 30 H 1.09001 * 117.46339 * 346.01731 * 20 18 17 31 31 H 1.09001 * 117.46162 * 201.22079 * 20 18 17 32 32 H 1.09005 * 110.48344 * 329.11017 * 23 21 20 33 33 H 1.08998 * 110.48508 * 206.47060 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.6470 1.2197 5 6 3.4823 -1.9731 1.1996 6 1 4.1383 -2.3709 1.9597 7 6 2.9905 -2.8051 0.2015 8 7 2.0348 -2.3820 -0.5951 9 14 3.6879 -4.5253 -0.0083 10 1 3.4775 -5.3005 1.2408 11 1 2.9982 -5.2052 -1.1342 12 1 5.1417 -4.4382 -0.2978 13 6 3.2424 0.0606 2.3618 14 8 3.7447 -0.4448 3.3433 15 6 2.7388 1.4798 2.4191 16 1 1.8177 1.5848 1.8458 17 6 2.5276 1.9328 3.8852 18 6 2.6232 3.4713 3.8232 19 1 1.7326 4.0405 4.0893 20 6 4.0044 4.1157 3.9572 21 6 3.4439 3.8105 2.5666 22 1 3.1579 4.6297 1.9069 23 6 3.8184 2.4664 1.9087 24 1 -1.0499 0.0001 0.0002 25 1 3.0088 1.0280 -0.0362 26 1 3.0096 -0.5440 -0.8713 27 1 1.6917 -2.9627 -1.2922 28 1 1.5443 1.6257 4.2413 29 1 3.3104 1.5274 4.5263 30 1 4.8188 3.4885 4.3197 31 1 4.0438 5.1606 4.2650 32 1 4.8097 2.1471 2.2307 33 1 3.7771 2.5487 0.8226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702338412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:03 Heat of formation + Delta-G solvation = 55.066038 kcal Electronic energy + Delta-G solvation = -16483.735181 eV Core-core repulsion = 13898.262112 eV Total energy + Delta-G solvation = -2585.473069 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72024 -37.79518 -35.12670 -32.27152 -31.26632 -30.94189 -27.92439 -26.42286 -25.02346 -22.78159 -20.60089 -19.46111 -18.46650 -17.80725 -16.67034 -16.26699 -15.83733 -14.72839 -14.14678 -13.96381 -13.37537 -13.06057 -12.81733 -12.56773 -12.14305 -12.06115 -11.45903 -11.11094 -11.00426 -10.92139 -10.68309 -10.63025 -10.50949 -10.28314 -9.83882 -9.42002 -9.36548 -9.22099 -8.79631 -8.33680 -7.80640 -6.26853 -3.87876 3.18891 3.25360 3.28678 3.62312 3.84811 4.00013 4.11133 4.20148 4.66450 4.94903 5.03833 5.12235 5.18922 5.43146 5.48441 5.57073 5.75837 5.81058 5.82889 5.99007 6.09331 6.15730 6.21311 6.39537 6.45488 6.50049 6.56948 6.81744 6.88197 7.09674 7.57096 8.10007 8.46586 8.84390 9.16182 9.38957 9.94208 10.72530 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.035720 B = 0.007896 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.683908 B = 3545.396095 C = 3970.796276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.105 4.105 3 C 0.231 3.769 4 N -0.443 5.443 5 C -0.310 4.310 6 H 0.102 0.898 7 C 0.028 3.972 8 N -0.875 5.875 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.583 6.583 15 C -0.106 4.106 16 H 0.089 0.911 17 C -0.076 4.076 18 C -0.165 4.165 19 H 0.106 0.894 20 C -0.155 4.155 21 C -0.166 4.166 22 H 0.107 0.893 23 C -0.083 4.083 24 H 0.198 0.802 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.268 0.732 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 10.126 0.869 10.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.106 4.106 3 C 0.108 3.892 4 N -0.161 5.161 5 C -0.438 4.438 6 H 0.119 0.881 7 C -0.174 4.174 8 N -0.514 5.514 9 Si 0.754 3.246 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.252 3.748 14 O -0.467 6.467 15 C -0.128 4.128 16 H 0.107 0.893 17 C -0.114 4.114 18 C -0.183 4.183 19 H 0.124 0.876 20 C -0.192 4.192 21 C -0.184 4.184 22 H 0.125 0.875 23 C -0.121 4.121 24 H 0.215 0.785 25 H 0.077 0.923 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.279 9.739 1.163 9.812 hybrid contribution -0.295 -0.914 -0.391 1.037 sum -0.016 8.825 0.772 8.859 Atomic orbital electron populations 1.24256 0.95382 1.06433 1.02939 1.23244 0.94401 0.95154 0.97847 1.18417 0.84136 0.95374 0.91321 1.43644 1.56199 1.09777 1.06496 1.19656 1.27472 0.83440 1.13216 0.88067 1.25330 0.95320 0.99828 0.96965 1.69970 1.24416 1.37165 1.19856 0.85979 0.78901 0.81788 0.77907 1.19942 1.21004 1.19928 1.19971 0.84076 0.87682 0.83114 1.90494 1.48562 1.72312 1.35334 1.22387 0.99286 0.93614 0.97481 0.89268 1.21769 1.02566 0.91158 0.95917 1.23262 0.94892 0.96598 1.03549 0.87594 1.23038 0.96727 1.00719 0.98704 1.23217 1.05835 0.99240 0.90133 0.87452 1.21925 0.98765 0.91656 0.99752 0.78493 0.92294 0.86551 0.92108 0.91600 0.89921 0.88918 0.88877 0.91048 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.68 19.25 29.55 0.57 -5.12 16 2 C -0.10 -2.37 10.24 -37.12 -0.38 -2.75 16 3 C 0.23 5.18 4.82 -6.83 -0.03 5.14 16 4 N -0.44 -11.30 2.60 -117.94 -0.31 -11.61 16 5 C -0.31 -8.61 9.36 -14.93 -0.14 -8.75 16 6 H 0.10 2.94 7.34 -52.49 -0.39 2.55 16 7 C 0.03 0.74 5.11 -17.47 -0.09 0.66 16 8 N -0.87 -23.02 9.02 55.50 0.50 -22.52 16 9 Si 0.93 20.77 29.57 -169.99 -5.03 15.75 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.46 11.35 6.79 -10.98 -0.07 11.28 16 14 O -0.58 -16.19 15.43 5.55 0.09 -16.10 16 15 C -0.11 -2.04 2.30 -89.78 -0.21 -2.24 16 16 H 0.09 1.72 6.43 -51.93 -0.33 1.38 16 17 C -0.08 -1.34 5.88 -25.07 -0.15 -1.48 16 18 C -0.16 -2.31 6.94 -89.51 -0.62 -2.94 16 19 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 20 C -0.15 -1.96 10.07 -26.73 -0.27 -2.23 16 21 C -0.17 -2.26 6.94 -89.50 -0.62 -2.88 16 22 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 23 C -0.08 -1.35 5.71 -25.07 -0.14 -1.49 16 24 H 0.20 3.37 7.80 -54.10 -0.42 2.95 16 25 H 0.06 1.12 5.53 -51.92 -0.29 0.83 16 26 H 0.12 2.77 6.32 -51.93 -0.33 2.44 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.59 7.26 -51.93 -0.38 1.21 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 33 H 0.07 1.08 6.69 -51.93 -0.35 0.73 16 LS Contribution 275.78 15.07 4.16 4.16 Total: -1.00 -30.37 275.78 -6.89 -37.26 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.15 Total: 5.86 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.16 Total: -12.80 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.19 Total: -34.13 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.37 -6.89 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702338412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.327 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds