Wall clock time and date at job start Mon Mar 30 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47414 * 297.97611 * 3 2 1 5 5 C 1.37101 * 119.99934 * 96.07772 * 4 3 2 6 6 H 1.07999 * 119.99843 * 159.27797 * 5 4 3 7 7 C 1.38942 * 120.00080 * 339.27108 * 5 4 3 8 8 N 1.31417 * 120.00234 * 349.31780 * 7 5 4 9 9 Si 1.86800 * 120.00195 * 169.31056 * 7 5 4 10 10 H 1.48507 * 109.46886 * 60.00617 * 9 7 5 11 11 H 1.48503 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47364 * 300.00714 * 9 7 5 13 13 C 1.34782 * 120.00352 * 276.08188 * 4 3 2 14 14 O 1.21288 * 120.00083 * 185.80080 * 13 4 3 15 15 C 1.50701 * 119.99576 * 5.79809 * 13 4 3 16 16 H 1.09006 * 110.67375 * 37.92528 * 15 13 4 17 17 C 1.54893 * 110.91388 * 161.27369 * 15 13 4 18 18 C 1.54265 * 104.19480 * 156.33082 * 17 15 13 19 19 H 1.08998 * 117.41481 * 116.37294 * 18 17 15 20 20 C 1.52997 * 118.19730 * 272.20823 * 18 17 15 21 21 C 1.52997 * 60.37887 * 93.61964 * 20 18 17 22 22 H 1.08998 * 119.75453 * 111.12435 * 21 20 18 23 23 C 1.54268 * 118.19848 * 266.38501 * 21 20 18 24 24 H 4.40639 * 5.51287 * 179.97438 * 4 1 2 25 25 H 1.09009 * 109.46600 * 177.97944 * 3 2 1 26 26 H 1.08995 * 109.47544 * 57.98005 * 3 2 1 27 27 H 0.97001 * 120.00456 * 179.97438 * 8 7 5 28 28 H 1.09000 * 110.48039 * 275.00856 * 17 15 13 29 29 H 1.08998 * 110.48914 * 37.64835 * 17 15 13 30 30 H 1.09001 * 117.46339 * 346.01731 * 20 18 17 31 31 H 1.09001 * 117.46162 * 201.22079 * 20 18 17 32 32 H 1.09005 * 110.48344 * 329.11017 * 23 21 20 33 33 H 1.08998 * 110.48508 * 206.47060 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.6470 1.2197 5 6 3.4823 -1.9731 1.1996 6 1 4.1383 -2.3709 1.9597 7 6 2.9905 -2.8051 0.2015 8 7 2.0348 -2.3820 -0.5951 9 14 3.6879 -4.5253 -0.0083 10 1 3.4775 -5.3005 1.2408 11 1 2.9982 -5.2052 -1.1342 12 1 5.1417 -4.4382 -0.2978 13 6 3.2424 0.0606 2.3618 14 8 3.7447 -0.4448 3.3433 15 6 2.7388 1.4798 2.4191 16 1 1.8177 1.5848 1.8458 17 6 2.5276 1.9328 3.8852 18 6 2.6232 3.4713 3.8232 19 1 1.7326 4.0405 4.0893 20 6 4.0044 4.1157 3.9572 21 6 3.4439 3.8105 2.5666 22 1 3.1579 4.6297 1.9069 23 6 3.8184 2.4664 1.9087 24 1 -1.0499 0.0001 0.0002 25 1 3.0088 1.0280 -0.0362 26 1 3.0096 -0.5440 -0.8713 27 1 1.6917 -2.9627 -1.2922 28 1 1.5443 1.6257 4.2413 29 1 3.3104 1.5274 4.5263 30 1 4.8188 3.4885 4.3197 31 1 4.0438 5.1606 4.2650 32 1 4.8097 2.1471 2.2307 33 1 3.7771 2.5487 0.8226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702338412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:03 Heat of formation + Delta-G solvation = 38.160620 kcal Electronic energy + Delta-G solvation = -16484.468255 eV Core-core repulsion = 13898.262112 eV Total energy + Delta-G solvation = -2586.206143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25922 -39.37431 -37.08255 -34.13020 -33.03310 -32.50229 -29.24299 -28.25948 -26.87917 -24.30164 -21.87017 -20.65048 -20.17858 -19.65927 -18.49390 -17.95240 -17.13781 -16.61606 -15.95184 -15.76884 -14.94497 -14.53004 -14.24912 -14.15963 -13.85363 -13.68297 -13.31440 -12.80724 -12.57211 -12.42723 -12.25479 -12.16270 -11.98962 -11.93573 -11.26135 -11.03899 -10.93133 -10.63296 -10.56782 -10.21545 -9.80255 -8.28421 -5.98070 1.37364 1.40257 1.50177 1.87165 2.12294 2.31542 2.39984 2.75778 3.07881 3.12953 3.64495 3.79203 3.87217 3.92261 4.24939 4.27482 4.35112 4.50621 4.56196 4.64216 4.72134 4.80305 4.94549 5.04680 5.04993 5.16584 5.25437 5.36156 5.43645 5.44591 5.49224 6.07203 6.45876 7.13090 7.15107 7.41968 7.98026 8.67835 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.035720 B = 0.007896 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.683908 B = 3545.396095 C = 3970.796276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.148 4.148 3 C 0.235 3.765 4 N -0.454 5.454 5 C -0.351 4.351 6 H 0.073 0.927 7 C 0.000 4.000 8 N -0.880 5.880 9 Si 0.988 3.012 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.267 1.267 13 C 0.450 3.550 14 O -0.630 6.630 15 C -0.100 4.100 16 H 0.093 0.907 17 C -0.079 4.079 18 C -0.167 4.167 19 H 0.132 0.868 20 C -0.144 4.144 21 C -0.160 4.160 22 H 0.138 0.862 23 C -0.082 4.082 24 H 0.233 0.767 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.272 0.728 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.053 0.947 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 11.834 0.039 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.149 4.149 3 C 0.112 3.888 4 N -0.172 5.172 5 C -0.479 4.479 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.518 5.518 9 Si 0.812 3.188 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.192 1.192 13 C 0.241 3.759 14 O -0.517 6.517 15 C -0.121 4.121 16 H 0.111 0.889 17 C -0.117 4.117 18 C -0.184 4.184 19 H 0.150 0.850 20 C -0.181 4.181 21 C -0.178 4.178 22 H 0.156 0.844 23 C -0.120 4.120 24 H 0.250 0.750 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.684 11.472 0.301 11.496 hybrid contribution -0.039 -1.489 -0.130 1.495 sum -0.723 9.983 0.171 10.010 Atomic orbital electron populations 1.25137 0.96344 1.04580 1.00972 1.23457 0.94973 0.96874 0.99632 1.18411 0.84657 0.96412 0.89275 1.43859 1.56124 1.09355 1.07830 1.19595 1.29003 0.85281 1.13982 0.90914 1.26013 0.95224 1.02967 0.96010 1.70084 1.24148 1.38099 1.19464 0.85079 0.78670 0.77339 0.77698 1.20687 1.19475 1.19213 1.20940 0.83081 0.89673 0.82223 1.90447 1.50550 1.73849 1.36863 1.22356 1.00028 0.90648 0.99081 0.88883 1.21740 1.01450 0.94319 0.94229 1.23215 0.96832 0.93901 1.04492 0.85026 1.23154 0.95180 1.02138 0.97597 1.23249 1.05660 0.98350 0.90493 0.84446 1.21906 0.96713 0.92571 1.00849 0.75017 0.89173 0.88382 0.91797 0.91796 0.92633 0.90357 0.85495 0.92853 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.04 19.25 74.32 1.43 -8.61 16 2 C -0.15 -6.58 10.24 31.13 0.32 -6.26 16 3 C 0.23 10.60 4.82 84.58 0.41 11.01 16 4 N -0.45 -23.91 2.60 -645.42 -1.68 -25.59 16 5 C -0.35 -20.25 9.36 84.04 0.79 -19.47 16 6 H 0.07 4.50 7.34 -2.91 -0.02 4.48 16 7 C 0.00 0.01 5.11 84.92 0.43 0.44 16 8 N -0.88 -46.20 9.02 21.66 0.20 -46.00 16 9 Si 0.99 42.94 29.57 68.60 2.03 44.97 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 C 0.45 22.96 6.79 87.66 0.59 23.55 16 14 O -0.63 -37.04 15.43 -3.05 -0.05 -37.09 16 15 C -0.10 -3.84 2.30 -10.25 -0.02 -3.86 16 16 H 0.09 3.51 6.43 -2.38 -0.02 3.50 16 17 C -0.08 -2.78 5.88 31.67 0.19 -2.60 16 18 C -0.17 -4.24 6.94 -10.07 -0.07 -4.31 16 19 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 20 C -0.14 -3.21 10.07 30.59 0.31 -2.91 16 21 C -0.16 -3.84 6.94 -10.07 -0.07 -3.91 16 22 H 0.14 2.57 8.14 -2.39 -0.02 2.56 16 23 C -0.08 -2.59 5.71 31.67 0.18 -2.41 16 24 H 0.23 7.14 7.80 -4.42 -0.03 7.11 16 25 H 0.09 3.38 5.53 -2.38 -0.01 3.37 16 26 H 0.10 4.74 6.32 -2.39 -0.02 4.72 16 27 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 2.23 7.26 -2.39 -0.02 2.21 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.85 8.04 -2.38 -0.02 1.83 16 33 H 0.09 2.42 6.69 -2.39 -0.02 2.41 16 Total: -1.00 -67.96 275.78 6.08 -61.88 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 1.10 Total: 21.16 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.48 Total: -19.33 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.48 Total: -71.60 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.05 Total: -37.09 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.96 6.08 -61.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702338412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.040 kcal (2) G-P(sol) polarization free energy of solvation -67.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds