Wall clock time and date at job start Mon Mar 30 2020 03:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86803 * 119.99717 * 2 1 4 4 H 1.48500 * 109.46882 * 274.97593 * 3 2 1 5 5 H 1.48493 * 109.47504 * 34.98079 * 3 2 1 6 6 H 1.48504 * 109.46670 * 154.98364 * 3 2 1 7 7 C 1.39737 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99659 * 186.02699 * 7 2 1 9 9 C 1.41484 * 120.00091 * 6.02422 * 7 2 1 10 10 N 1.34850 * 126.02126 * 354.26307 * 9 7 2 11 11 N 1.28671 * 109.63295 * 179.70886 * 10 9 7 12 12 N 1.40122 * 108.93767 * 0.45618 * 11 10 9 13 13 C 1.46494 * 126.49184 * 179.80514 * 12 11 10 14 14 C 1.53002 * 117.50400 * 351.07264 * 13 12 11 15 15 C 1.53001 * 117.49653 * 59.69718 * 13 12 11 16 16 C 1.35019 * 107.01433 * 359.55195 * 12 11 10 17 17 C 1.50701 * 126.77270 * 180.26497 * 16 12 11 18 18 C 1.52999 * 109.47350 * 89.99434 * 17 16 12 19 19 C 1.52994 * 117.49967 * 243.74643 * 18 17 16 20 20 C 1.52999 * 117.50000 * 175.08624 * 18 17 16 21 21 H 0.97009 * 120.00055 * 0.02562 * 1 2 3 22 22 H 1.09003 * 115.56201 * 205.37424 * 13 12 11 23 23 H 1.08992 * 117.49698 * 214.97865 * 14 13 12 24 24 H 1.09000 * 117.49258 * 0.02562 * 14 13 12 25 25 H 1.08991 * 117.50012 * 359.97438 * 15 13 12 26 26 H 1.08999 * 117.49931 * 144.99550 * 15 13 12 27 27 H 1.09004 * 109.46778 * 209.99077 * 17 16 12 28 28 H 1.09000 * 109.47135 * 329.99526 * 17 16 12 29 29 H 1.09001 * 115.54856 * 29.41787 * 18 17 16 30 30 H 1.09004 * 117.49577 * 0.02562 * 19 18 17 31 31 H 1.09006 * 117.49864 * 145.01478 * 19 18 17 32 32 H 1.08997 * 117.50178 * 214.98154 * 20 18 17 33 33 H 1.09002 * 117.49799 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.3861 2.1072 -1.3948 5 1 1.4979 2.6200 0.8026 6 1 3.5900 1.4121 0.5921 7 6 2.0085 -1.2102 -0.0005 8 1 3.0840 -1.2127 0.0977 9 6 1.3070 -2.4320 -0.1297 10 7 -0.0334 -2.5785 -0.1503 11 7 -0.3302 -3.8231 -0.2864 12 7 0.8545 -4.5686 -0.3523 13 6 0.9622 -6.0219 -0.5020 14 6 -0.3249 -6.8413 -0.3874 15 6 0.3423 -6.6512 -1.7512 16 6 1.8780 -3.6931 -0.2576 17 6 3.3491 -4.0186 -0.2852 18 6 3.8529 -3.9805 -1.7293 19 6 4.3734 -5.2875 -2.3307 20 6 5.3534 -4.1718 -1.9594 21 1 -0.4851 0.8401 -0.0004 22 1 1.8788 -6.4678 -0.1158 23 1 -0.2550 -7.8261 0.0742 24 1 -1.2518 -6.2989 -0.2012 25 1 -0.1460 -5.9841 -2.4614 26 1 0.8512 -7.5110 -2.1870 27 1 3.8946 -3.2857 0.3093 28 1 3.5088 -5.0141 0.1292 29 1 3.3252 -3.2960 -2.3934 30 1 4.3565 -6.1747 -1.6975 31 1 4.1884 -5.4628 -3.3905 32 1 5.8127 -3.6134 -2.7750 33 1 5.9817 -4.3243 -1.0818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:14 Heat of formation + Delta-G solvation = 133.670201 kcal Electronic energy + Delta-G solvation = -16225.627865 eV Core-core repulsion = 13675.856079 eV Total energy + Delta-G solvation = -2549.771786 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04764 -37.02034 -36.68948 -33.27550 -31.62177 -29.94056 -27.11867 -24.55516 -22.98211 -22.20686 -22.07225 -20.52174 -19.78327 -18.83466 -17.00305 -16.06761 -15.11499 -14.81711 -14.46283 -14.15627 -13.42718 -13.10024 -13.01484 -12.65695 -11.82728 -11.34426 -11.29222 -11.19671 -11.11026 -10.98696 -10.86479 -10.70424 -10.40219 -10.19579 -10.01421 -9.63426 -9.45632 -9.17864 -8.84826 -8.24735 -7.36281 -6.34221 -4.12323 2.75912 3.17077 3.22957 3.25945 3.53919 4.11164 4.16732 4.17877 4.34082 4.92380 5.05495 5.09733 5.21127 5.28835 5.30651 5.56998 5.75585 5.78988 5.80984 5.87231 6.07016 6.11376 6.18522 6.34138 6.36288 6.37415 6.50132 6.77333 6.97912 7.17218 7.46040 7.55576 8.21365 8.46998 8.86149 9.12244 10.23755 10.62907 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.009507 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.004031 B = 2944.483280 C = 4037.580251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.154 3.846 10 N -0.229 5.229 11 N -0.133 5.133 12 N -0.348 5.348 13 C 0.097 3.903 14 C -0.173 4.173 15 C -0.183 4.183 16 C -0.106 4.106 17 C 0.017 3.983 18 C -0.128 4.128 19 C -0.187 4.187 20 C -0.186 4.186 21 H 0.271 0.729 22 H 0.127 0.873 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.881 -9.652 -2.480 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.024 3.976 10 N -0.101 5.101 11 N -0.109 5.109 12 N -0.142 5.142 13 C -0.010 4.010 14 C -0.211 4.211 15 C -0.222 4.222 16 C -0.237 4.237 17 C -0.022 4.022 18 C -0.147 4.147 19 C -0.224 4.224 20 C -0.223 4.223 21 H 0.082 0.918 22 H 0.145 0.855 23 H 0.117 0.883 24 H 0.127 0.873 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.098 -9.548 -2.465 11.101 hybrid contribution 1.499 0.678 -0.119 1.650 sum 6.597 -8.869 -2.584 11.352 Atomic orbital electron populations 1.70030 1.06798 1.27703 1.35804 1.25776 0.94774 1.00471 0.93559 0.86361 0.80288 0.81668 0.78637 1.19937 1.20572 1.18852 1.18525 0.93959 0.88015 1.48022 0.90039 1.18973 0.87486 0.91756 0.99382 1.75103 1.14465 1.05269 1.15221 1.81474 1.05062 0.98953 1.25378 1.48861 1.06479 1.04207 1.54693 1.21366 0.98188 0.78323 1.03089 1.23233 0.97466 1.00509 0.99868 1.23362 1.04171 1.02811 0.91827 1.21240 0.89883 0.90547 1.22038 1.19151 0.89472 1.00065 0.93538 1.22429 0.94804 0.98999 0.98494 1.22978 1.05448 0.93043 1.00953 1.22936 0.93284 1.03077 1.03027 0.91833 0.85509 0.88252 0.87311 0.88373 0.88300 0.89998 0.93154 0.87573 0.89465 0.89584 0.89319 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.28 11.95 55.54 0.66 -21.62 16 2 C 0.07 1.96 5.49 -17.35 -0.10 1.87 16 3 Si 0.91 19.80 29.56 -169.99 -5.03 14.77 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.45 -12.30 9.12 -37.79 -0.34 -12.64 16 8 H 0.08 2.07 7.26 -52.49 -0.38 1.69 16 9 C 0.15 4.28 6.71 -85.01 -0.57 3.71 16 10 N -0.23 -6.76 10.58 32.05 0.34 -6.42 16 11 N -0.13 -3.53 13.19 60.35 0.80 -2.73 16 12 N -0.35 -7.83 3.96 -49.74 -0.20 -8.03 16 13 C 0.10 1.62 6.66 -67.93 -0.45 1.17 16 14 C -0.17 -2.50 10.20 -26.73 -0.27 -2.77 16 15 C -0.18 -2.62 10.46 -26.73 -0.28 -2.90 16 16 C -0.11 -2.48 6.32 -80.90 -0.51 -2.99 16 17 C 0.02 0.32 5.57 -27.88 -0.16 0.16 16 18 C -0.13 -2.15 5.72 -90.62 -0.52 -2.67 16 19 C -0.19 -2.53 10.18 -26.70 -0.27 -2.80 16 20 C -0.19 -2.51 10.25 -26.70 -0.27 -2.79 16 21 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 22 H 0.13 1.81 7.44 -51.93 -0.39 1.42 16 23 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.11 1.81 7.86 -51.93 -0.41 1.40 16 25 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.53 7.51 -51.93 -0.39 1.14 16 28 H 0.05 0.81 7.12 -51.93 -0.37 0.44 16 29 H 0.11 2.05 8.07 -51.93 -0.42 1.63 16 30 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 287.68 15.07 4.34 4.34 Total: -1.00 -31.60 287.68 -7.28 -38.88 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.44 Total: 3.46 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -3.75 Total: -22.65 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 1.60 Total: -38.79 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.60 -7.28 -38.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.551 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds