Wall clock time and date at job start Mon Mar 30 2020 03:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86803 * 119.99717 * 2 1 4 4 H 1.48500 * 109.46882 * 274.97593 * 3 2 1 5 5 H 1.48493 * 109.47504 * 34.98079 * 3 2 1 6 6 H 1.48504 * 109.46670 * 154.98364 * 3 2 1 7 7 C 1.39737 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99659 * 186.02699 * 7 2 1 9 9 C 1.41484 * 120.00091 * 6.02422 * 7 2 1 10 10 N 1.34850 * 126.02126 * 354.26307 * 9 7 2 11 11 N 1.28671 * 109.63295 * 179.70886 * 10 9 7 12 12 N 1.40122 * 108.93767 * 0.45618 * 11 10 9 13 13 C 1.46494 * 126.49184 * 179.80514 * 12 11 10 14 14 C 1.53002 * 117.50400 * 351.07264 * 13 12 11 15 15 C 1.53001 * 117.49653 * 59.69718 * 13 12 11 16 16 C 1.35019 * 107.01433 * 359.55195 * 12 11 10 17 17 C 1.50701 * 126.77270 * 180.26497 * 16 12 11 18 18 C 1.52999 * 109.47350 * 89.99434 * 17 16 12 19 19 C 1.52994 * 117.49967 * 243.74643 * 18 17 16 20 20 C 1.52999 * 117.50000 * 175.08624 * 18 17 16 21 21 H 0.97009 * 120.00055 * 0.02562 * 1 2 3 22 22 H 1.09003 * 115.56201 * 205.37424 * 13 12 11 23 23 H 1.08992 * 117.49698 * 214.97865 * 14 13 12 24 24 H 1.09000 * 117.49258 * 0.02562 * 14 13 12 25 25 H 1.08991 * 117.50012 * 359.97438 * 15 13 12 26 26 H 1.08999 * 117.49931 * 144.99550 * 15 13 12 27 27 H 1.09004 * 109.46778 * 209.99077 * 17 16 12 28 28 H 1.09000 * 109.47135 * 329.99526 * 17 16 12 29 29 H 1.09001 * 115.54856 * 29.41787 * 18 17 16 30 30 H 1.09004 * 117.49577 * 0.02562 * 19 18 17 31 31 H 1.09006 * 117.49864 * 145.01478 * 19 18 17 32 32 H 1.08997 * 117.50178 * 214.98154 * 20 18 17 33 33 H 1.09002 * 117.49799 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.3861 2.1072 -1.3948 5 1 1.4979 2.6200 0.8026 6 1 3.5900 1.4121 0.5921 7 6 2.0085 -1.2102 -0.0005 8 1 3.0840 -1.2127 0.0977 9 6 1.3070 -2.4320 -0.1297 10 7 -0.0334 -2.5785 -0.1503 11 7 -0.3302 -3.8231 -0.2864 12 7 0.8545 -4.5686 -0.3523 13 6 0.9622 -6.0219 -0.5020 14 6 -0.3249 -6.8413 -0.3874 15 6 0.3423 -6.6512 -1.7512 16 6 1.8780 -3.6931 -0.2576 17 6 3.3491 -4.0186 -0.2852 18 6 3.8529 -3.9805 -1.7293 19 6 4.3734 -5.2875 -2.3307 20 6 5.3534 -4.1718 -1.9594 21 1 -0.4851 0.8401 -0.0004 22 1 1.8788 -6.4678 -0.1158 23 1 -0.2550 -7.8261 0.0742 24 1 -1.2518 -6.2989 -0.2012 25 1 -0.1460 -5.9841 -2.4614 26 1 0.8512 -7.5110 -2.1870 27 1 3.8946 -3.2857 0.3093 28 1 3.5088 -5.0141 0.1292 29 1 3.3252 -3.2960 -2.3934 30 1 4.3565 -6.1747 -1.6975 31 1 4.1884 -5.4628 -3.3905 32 1 5.8127 -3.6134 -2.7750 33 1 5.9817 -4.3243 -1.0818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:14 Heat of formation + Delta-G solvation = 113.691685 kcal Electronic energy + Delta-G solvation = -16226.494199 eV Core-core repulsion = 13675.856079 eV Total energy + Delta-G solvation = -2550.638119 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91827 -38.26333 -38.04906 -35.22585 -33.36206 -31.77924 -28.83146 -26.47885 -24.61286 -23.37920 -23.12102 -22.02366 -21.56145 -20.42691 -18.82331 -17.60491 -16.81001 -16.28844 -16.02074 -15.57340 -14.92867 -14.72162 -14.55976 -14.21501 -13.39406 -12.96765 -12.85464 -12.70157 -12.48488 -12.38928 -12.28618 -12.23350 -12.07711 -11.62501 -11.53963 -11.14375 -11.07620 -10.79110 -10.64676 -9.98090 -9.34097 -8.30355 -6.17484 0.95237 1.42674 1.43240 1.57662 1.92695 2.32163 2.34358 2.84604 3.03432 3.50578 3.60655 3.83700 3.88562 4.02293 4.08132 4.16849 4.31278 4.55497 4.67935 4.69542 4.84616 4.86540 4.93558 5.00749 5.08001 5.16897 5.19891 5.27894 5.36612 5.45344 5.54329 5.65903 6.41107 6.48814 6.90161 7.10083 8.29014 8.69845 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.009507 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.004031 B = 2944.483280 C = 4037.580251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.019 3.981 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.249 1.249 7 C -0.477 4.477 8 H 0.091 0.909 9 C 0.104 3.896 10 N -0.287 5.287 11 N -0.176 5.176 12 N -0.332 5.332 13 C 0.055 3.945 14 C -0.160 4.160 15 C -0.162 4.162 16 C -0.072 4.072 17 C 0.021 3.979 18 C -0.162 4.162 19 C -0.165 4.165 20 C -0.167 4.167 21 H 0.271 0.729 22 H 0.165 0.835 23 H 0.145 0.855 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.146 0.854 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 -12.291 -2.831 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.172 1.172 7 C -0.514 4.514 8 H 0.109 0.891 9 C -0.029 4.029 10 N -0.155 5.155 11 N -0.150 5.150 12 N -0.125 5.125 13 C -0.049 4.049 14 C -0.198 4.198 15 C -0.200 4.200 16 C -0.207 4.207 17 C -0.018 4.018 18 C -0.181 4.181 19 C -0.202 4.202 20 C -0.204 4.204 21 H 0.081 0.919 22 H 0.182 0.818 23 H 0.162 0.838 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.164 0.836 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.116 -12.257 -2.825 14.969 hybrid contribution 0.620 1.207 -0.058 1.358 sum 8.736 -11.051 -2.882 14.378 Atomic orbital electron populations 1.70201 1.08829 1.28528 1.38314 1.26771 0.95546 1.04383 0.92755 0.85161 0.79179 0.76369 0.78699 1.19515 1.20263 1.17221 1.18876 0.94466 0.88795 1.49240 0.89074 1.19598 0.87737 0.93930 1.01680 1.75036 1.15898 1.06836 1.17744 1.81337 1.06544 0.98690 1.28447 1.49334 1.05330 1.06656 1.51144 1.22191 1.01180 0.75147 1.06349 1.23332 0.94857 1.01448 1.00164 1.23414 1.02958 1.02900 0.90743 1.22092 0.92344 0.89535 1.16728 1.19299 0.85582 1.01693 0.95241 1.22064 0.97628 1.01761 0.96677 1.23113 1.03040 0.92377 1.01637 1.23051 0.91124 1.02330 1.03852 0.91896 0.81758 0.83757 0.90334 0.91313 0.83613 0.90514 0.89667 0.91425 0.87108 0.88810 0.88509 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.60 11.95 21.80 0.26 -50.34 16 2 C 0.02 1.04 5.49 85.18 0.47 1.51 16 3 Si 0.98 42.03 29.56 68.60 2.03 44.06 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.48 -27.24 9.12 23.43 0.21 -27.03 16 8 H 0.09 4.77 7.26 -2.91 -0.02 4.75 16 9 C 0.10 6.04 6.71 39.67 0.27 6.31 16 10 N -0.29 -18.00 10.58 -52.51 -0.56 -18.55 16 11 N -0.18 -9.77 13.19 37.02 0.49 -9.28 16 12 N -0.33 -14.96 3.96 -311.27 -1.23 -16.19 16 13 C 0.05 1.68 6.66 44.99 0.30 1.98 16 14 C -0.16 -4.20 10.20 30.60 0.31 -3.89 16 15 C -0.16 -4.13 10.46 30.60 0.32 -3.81 16 16 C -0.07 -3.38 6.32 42.26 0.27 -3.11 16 17 C 0.02 0.74 5.57 29.85 0.17 0.91 16 18 C -0.16 -5.09 5.72 -10.80 -0.06 -5.15 16 19 C -0.16 -3.70 10.18 30.62 0.31 -3.39 16 20 C -0.17 -3.85 10.25 30.62 0.31 -3.53 16 21 H 0.27 15.24 8.30 -92.70 -0.77 14.47 16 22 H 0.17 3.80 7.44 -2.39 -0.02 3.79 16 23 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.08 2.60 7.86 -2.39 -0.02 2.58 16 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.08 2.76 7.51 -2.39 -0.02 2.75 16 28 H 0.08 2.37 7.12 -2.39 -0.02 2.35 16 29 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 30 H 0.11 2.01 8.03 -2.38 -0.02 1.99 16 31 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -76.41 287.68 4.97 -71.44 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.10 Total: 18.07 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 2.88 Total: -39.20 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -1.04 Total: -94.37 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -76.41 4.97 -71.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.136 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds