Wall clock time and date at job start Mon Mar 30 2020 03:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30992 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47098 * 239.99923 * 3 2 1 5 5 H 1.48505 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47316 * 119.99780 * 3 2 1 7 7 C 1.39735 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.41499 * 119.99822 * 0.02562 * 7 2 1 10 10 N 1.34845 * 126.02140 * 6.21046 * 9 7 2 11 11 N 1.28668 * 109.63242 * 180.27460 * 10 9 7 12 12 N 1.40123 * 108.93687 * 359.72719 * 11 10 9 13 13 C 1.46500 * 126.49178 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46722 * 269.96700 * 13 12 11 15 15 C 1.52998 * 117.50120 * 243.75031 * 14 13 12 16 16 C 1.53001 * 117.49886 * 175.08555 * 14 13 12 17 17 C 1.35019 * 107.01488 * 359.97438 * 12 11 10 18 18 C 1.50699 * 126.77201 * 180.02562 * 17 12 11 19 19 C 1.52998 * 117.49780 * 48.72180 * 18 17 12 20 20 C 1.53009 * 117.49807 * 117.37848 * 18 17 12 21 21 H 0.96994 * 119.99807 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47103 * 29.96283 * 13 12 11 23 23 H 1.08997 * 109.47379 * 149.97064 * 13 12 11 24 24 H 1.09003 * 115.55142 * 29.41934 * 14 13 12 25 25 H 1.09002 * 117.49446 * 359.97438 * 15 14 13 26 26 H 1.08994 * 117.50545 * 145.02130 * 15 14 13 27 27 H 1.09002 * 117.49721 * 214.97582 * 16 14 13 28 28 H 1.08994 * 117.49882 * 359.97438 * 16 14 13 29 29 H 1.08998 * 115.55072 * 263.05086 * 18 17 12 30 30 H 1.09009 * 117.49894 * 215.00334 * 19 18 17 31 31 H 1.09008 * 117.50021 * 0.02562 * 19 18 17 32 32 H 1.09001 * 117.49779 * 359.97438 * 20 18 17 33 33 H 1.08992 * 117.49406 * 144.99986 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.0977 1.6965 -1.2125 5 1 1.2788 2.7465 -0.0006 6 1 3.0976 1.6965 1.2125 7 6 2.0087 -1.2101 0.0005 8 1 3.0886 -1.2100 0.0010 9 6 1.3012 -2.4355 0.0005 10 7 -0.0342 -2.5802 -0.1179 11 7 -0.3394 -3.8294 -0.0727 12 7 0.8348 -4.5792 0.0772 13 6 0.9310 -6.0381 0.1704 14 6 0.8352 -6.4627 1.6372 15 6 2.0556 -7.1475 2.2557 16 6 0.7995 -7.9625 1.9376 17 6 1.8608 -3.7026 0.1184 18 6 3.3236 -4.0322 0.2692 19 6 3.9005 -5.1180 -0.6414 20 6 4.2565 -3.6487 -0.8814 21 1 -0.4849 0.8400 -0.0004 22 1 0.1164 -6.4927 -0.3933 23 1 1.8853 -6.3664 -0.2412 24 1 0.2470 -5.8068 2.2791 25 1 2.9267 -7.2958 1.6174 26 1 2.2703 -6.9424 3.3044 27 1 0.1883 -8.2932 2.7774 28 1 0.8438 -8.6467 1.0903 29 1 3.7192 -3.9626 1.2824 30 1 4.6757 -5.7628 -0.2271 31 1 3.2222 -5.5937 -1.3498 32 1 3.8121 -3.1584 -1.7476 33 1 5.2657 -3.3268 -0.6250 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:18 Heat of formation + Delta-G solvation = 136.834022 kcal Electronic energy + Delta-G solvation = -16269.033785 eV Core-core repulsion = 13719.399193 eV Total energy + Delta-G solvation = -2549.634592 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06108 -37.33969 -36.32355 -33.49396 -32.07737 -29.23630 -27.00181 -24.84590 -22.49633 -22.36988 -21.97389 -20.78148 -19.94963 -18.87550 -17.14786 -15.84133 -15.25869 -14.83876 -14.62473 -14.17170 -13.66393 -13.20943 -13.03986 -12.64074 -11.75468 -11.51518 -11.48969 -11.13109 -11.07096 -11.00206 -10.77388 -10.41736 -10.28382 -10.08887 -9.87181 -9.71824 -9.64683 -9.22140 -8.73847 -8.38679 -7.34799 -6.31622 -4.10322 2.84631 3.20712 3.23357 3.25197 3.54463 3.95017 4.17815 4.35005 4.37322 4.83101 4.96480 5.06468 5.28172 5.36328 5.46872 5.54436 5.61390 5.64860 5.71632 5.82219 5.92572 5.95080 6.13647 6.15782 6.32208 6.40149 6.55684 6.75270 6.99050 7.18946 7.43548 7.57481 8.21088 8.51069 8.88666 9.15065 10.25798 10.65621 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.031621 B = 0.007867 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.275017 B = 3558.204890 C = 4085.497936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.447 4.447 8 H 0.082 0.918 9 C 0.158 3.842 10 N -0.230 5.230 11 N -0.133 5.133 12 N -0.370 5.370 13 C 0.165 3.835 14 C -0.161 4.161 15 C -0.175 4.175 16 C -0.177 4.177 17 C -0.087 4.087 18 C -0.036 4.036 19 C -0.195 4.195 20 C -0.158 4.158 21 H 0.272 0.728 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -10.684 1.596 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.028 3.972 10 N -0.102 5.102 11 N -0.109 5.109 12 N -0.165 5.165 13 C 0.041 3.959 14 C -0.181 4.181 15 C -0.212 4.212 16 C -0.215 4.215 17 C -0.218 4.218 18 C -0.056 4.056 19 C -0.232 4.232 20 C -0.196 4.196 21 H 0.082 0.918 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.900 -10.596 1.440 11.763 hybrid contribution 1.469 0.682 0.235 1.636 sum 6.369 -9.915 1.675 11.902 Atomic orbital electron populations 1.70008 1.06779 1.27799 1.35996 1.25788 0.94782 1.00450 0.93589 0.86436 0.79817 0.81246 0.79407 1.19348 1.20693 1.19381 1.18506 0.93580 0.87807 1.48408 0.90009 1.18936 0.87532 0.91631 0.99056 1.75094 1.14235 1.05376 1.15495 1.81502 1.05473 0.98858 1.25044 1.49390 1.06507 1.05231 1.55403 1.21008 1.02726 0.77913 0.94242 1.22721 1.02556 0.95143 0.97644 1.23020 0.92274 1.04159 1.01733 1.22944 1.01626 0.93575 1.03338 1.20486 0.88580 0.90403 1.22323 1.19744 0.89011 1.01843 0.95050 1.22993 1.03510 0.92370 1.04334 1.22861 0.99373 0.96197 1.01160 0.91788 0.89776 0.89558 0.87394 0.88649 0.89004 0.88853 0.88777 0.88185 0.89381 0.89595 0.88450 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.46 11.94 55.54 0.66 -21.79 16 2 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 3 Si 0.91 19.87 29.56 -169.99 -5.02 14.85 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.45 -12.30 9.16 -37.78 -0.35 -12.65 16 8 H 0.08 2.09 7.49 -52.49 -0.39 1.70 16 9 C 0.16 4.43 6.71 -85.01 -0.57 3.86 16 10 N -0.23 -6.82 10.58 32.05 0.34 -6.48 16 11 N -0.13 -3.55 13.74 60.35 0.83 -2.72 16 12 N -0.37 -8.29 3.63 -56.18 -0.20 -8.49 16 13 C 0.17 2.74 6.57 -4.04 -0.03 2.72 16 14 C -0.16 -2.39 6.01 -90.62 -0.54 -2.94 16 15 C -0.17 -2.12 10.18 -26.69 -0.27 -2.39 16 16 C -0.18 -1.99 10.26 -26.69 -0.27 -2.26 16 17 C -0.09 -2.04 6.54 -80.90 -0.53 -2.57 16 18 C -0.04 -0.67 5.70 -91.77 -0.52 -1.20 16 19 C -0.19 -2.90 8.90 -26.69 -0.24 -3.14 16 20 C -0.16 -2.64 9.99 -26.69 -0.27 -2.91 16 21 H 0.27 7.21 8.30 -40.82 -0.34 6.87 16 22 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.09 1.26 5.08 -51.93 -0.26 1.00 16 24 H 0.11 1.89 8.14 -51.93 -0.42 1.46 16 25 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 31 H 0.09 1.31 6.97 -51.92 -0.36 0.95 16 32 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 285.45 15.07 4.30 4.30 Total: -1.00 -31.73 285.45 -7.16 -38.88 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.38 Total: 3.07 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -3.69 Total: -21.61 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 1.63 Total: -39.49 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.73 -7.16 -38.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.716 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds