Wall clock time and date at job start Mon Mar 30 2020 03:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30992 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47098 * 239.99923 * 3 2 1 5 5 H 1.48505 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47316 * 119.99780 * 3 2 1 7 7 C 1.39735 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.41499 * 119.99822 * 0.02562 * 7 2 1 10 10 N 1.34845 * 126.02140 * 6.21046 * 9 7 2 11 11 N 1.28668 * 109.63242 * 180.27460 * 10 9 7 12 12 N 1.40123 * 108.93687 * 359.72719 * 11 10 9 13 13 C 1.46500 * 126.49178 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46722 * 269.96700 * 13 12 11 15 15 C 1.52998 * 117.50120 * 243.75031 * 14 13 12 16 16 C 1.53001 * 117.49886 * 175.08555 * 14 13 12 17 17 C 1.35019 * 107.01488 * 359.97438 * 12 11 10 18 18 C 1.50699 * 126.77201 * 180.02562 * 17 12 11 19 19 C 1.52998 * 117.49780 * 48.72180 * 18 17 12 20 20 C 1.53009 * 117.49807 * 117.37848 * 18 17 12 21 21 H 0.96994 * 119.99807 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47103 * 29.96283 * 13 12 11 23 23 H 1.08997 * 109.47379 * 149.97064 * 13 12 11 24 24 H 1.09003 * 115.55142 * 29.41934 * 14 13 12 25 25 H 1.09002 * 117.49446 * 359.97438 * 15 14 13 26 26 H 1.08994 * 117.50545 * 145.02130 * 15 14 13 27 27 H 1.09002 * 117.49721 * 214.97582 * 16 14 13 28 28 H 1.08994 * 117.49882 * 359.97438 * 16 14 13 29 29 H 1.08998 * 115.55072 * 263.05086 * 18 17 12 30 30 H 1.09009 * 117.49894 * 215.00334 * 19 18 17 31 31 H 1.09008 * 117.50021 * 0.02562 * 19 18 17 32 32 H 1.09001 * 117.49779 * 359.97438 * 20 18 17 33 33 H 1.08992 * 117.49406 * 144.99986 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.0977 1.6965 -1.2125 5 1 1.2788 2.7465 -0.0006 6 1 3.0976 1.6965 1.2125 7 6 2.0087 -1.2101 0.0005 8 1 3.0886 -1.2100 0.0010 9 6 1.3012 -2.4355 0.0005 10 7 -0.0342 -2.5802 -0.1179 11 7 -0.3394 -3.8294 -0.0727 12 7 0.8348 -4.5792 0.0772 13 6 0.9310 -6.0381 0.1704 14 6 0.8352 -6.4627 1.6372 15 6 2.0556 -7.1475 2.2557 16 6 0.7995 -7.9625 1.9376 17 6 1.8608 -3.7026 0.1184 18 6 3.3236 -4.0322 0.2692 19 6 3.9005 -5.1180 -0.6414 20 6 4.2565 -3.6487 -0.8814 21 1 -0.4849 0.8400 -0.0004 22 1 0.1164 -6.4927 -0.3933 23 1 1.8853 -6.3664 -0.2412 24 1 0.2470 -5.8068 2.2791 25 1 2.9267 -7.2958 1.6174 26 1 2.2703 -6.9424 3.3044 27 1 0.1883 -8.2932 2.7774 28 1 0.8438 -8.6467 1.0903 29 1 3.7192 -3.9626 1.2824 30 1 4.6757 -5.7628 -0.2271 31 1 3.2222 -5.5937 -1.3498 32 1 3.8121 -3.1584 -1.7476 33 1 5.2657 -3.3268 -0.6250 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:18 Heat of formation + Delta-G solvation = 116.772879 kcal Electronic energy + Delta-G solvation = -16269.903702 eV Core-core repulsion = 13719.399193 eV Total energy + Delta-G solvation = -2550.504508 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94132 -38.51540 -37.72283 -35.40195 -33.83047 -31.16716 -28.61001 -26.75676 -24.07530 -23.51180 -23.12577 -22.26607 -21.60971 -20.52119 -19.02385 -17.31113 -16.78212 -16.56775 -16.04818 -15.54617 -15.20404 -14.75584 -14.61091 -14.16738 -13.48174 -12.94591 -12.92628 -12.69975 -12.53314 -12.35817 -12.22469 -12.07479 -11.66170 -11.54523 -11.37632 -11.26784 -11.09680 -10.91309 -10.55476 -10.22460 -9.33796 -8.28188 -6.16217 0.99483 1.43778 1.46781 1.56690 1.95568 2.33359 2.35765 2.88453 3.01066 3.53787 3.70157 3.85237 3.89191 4.02233 4.11660 4.14652 4.25251 4.40543 4.60594 4.64596 4.79048 4.80992 4.99602 5.00355 5.11760 5.19458 5.23912 5.27527 5.30267 5.38825 5.51005 5.61316 6.42959 6.47613 6.91879 7.12225 8.29390 8.71921 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.031621 B = 0.007867 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.275017 B = 3558.204890 C = 4085.497936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.018 3.982 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.093 0.907 9 C 0.108 3.892 10 N -0.286 5.286 11 N -0.179 5.179 12 N -0.352 5.352 13 C 0.155 3.845 14 C -0.195 4.195 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.050 4.050 18 C -0.071 4.071 19 C -0.155 4.155 20 C -0.159 4.159 21 H 0.271 0.729 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.029 -13.025 1.840 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.511 4.511 8 H 0.111 0.889 9 C -0.026 4.026 10 N -0.155 5.155 11 N -0.154 5.154 12 N -0.146 5.146 13 C 0.034 3.966 14 C -0.215 4.215 15 C -0.198 4.198 16 C -0.186 4.186 17 C -0.185 4.185 18 C -0.091 4.091 19 C -0.192 4.192 20 C -0.197 4.197 21 H 0.081 0.919 22 H 0.110 0.890 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.134 0.866 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.151 0.849 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.189 -13.011 1.683 15.465 hybrid contribution 0.516 1.123 0.185 1.250 sum 8.705 -11.888 1.868 14.852 Atomic orbital electron populations 1.70190 1.08857 1.28588 1.38541 1.26794 0.95543 1.04429 0.92755 0.85222 0.78257 0.75884 0.79980 1.18199 1.20579 1.18183 1.18869 0.94158 0.88492 1.49555 0.88869 1.19585 0.87772 0.93866 1.01331 1.75028 1.15753 1.06822 1.17871 1.81367 1.07073 0.98646 1.28309 1.49880 1.05420 1.07488 1.51771 1.21523 1.04609 0.74281 0.96209 1.22429 1.05708 0.97584 0.95751 1.23170 0.92322 1.02259 1.02082 1.23090 1.00570 0.90804 1.04147 1.21316 0.91093 0.89355 1.16758 1.19908 0.85967 1.06423 0.96839 1.23129 1.03008 0.91599 1.01474 1.22920 0.99912 0.97972 0.98846 0.91922 0.89039 0.86604 0.91166 0.86647 0.88634 0.87857 0.86429 0.86764 0.84909 0.89771 0.91150 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.85 11.94 21.80 0.26 -50.59 16 2 C 0.02 0.99 5.49 85.18 0.47 1.46 16 3 Si 0.99 41.87 29.56 68.60 2.03 43.90 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.47 -26.97 9.16 23.44 0.21 -26.76 16 8 H 0.09 4.83 7.49 -2.91 -0.02 4.81 16 9 C 0.11 6.27 6.71 39.67 0.27 6.53 16 10 N -0.29 -18.02 10.58 -52.51 -0.56 -18.57 16 11 N -0.18 -10.08 13.74 37.02 0.51 -9.57 16 12 N -0.35 -15.94 3.63 -331.64 -1.20 -17.14 16 13 C 0.16 4.89 6.57 86.38 0.57 5.46 16 14 C -0.19 -5.48 6.01 -10.79 -0.06 -5.54 16 15 C -0.16 -3.27 10.18 30.62 0.31 -2.96 16 16 C -0.15 -2.78 10.26 30.62 0.31 -2.47 16 17 C -0.05 -2.34 6.54 42.25 0.28 -2.07 16 18 C -0.07 -2.46 5.70 -11.54 -0.07 -2.53 16 19 C -0.16 -3.85 8.90 30.62 0.27 -3.58 16 20 C -0.16 -4.81 9.99 30.62 0.31 -4.50 16 21 H 0.27 15.31 8.30 -92.71 -0.77 14.54 16 22 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 23 H 0.12 2.93 5.08 -2.39 -0.01 2.92 16 24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.12 1.90 8.03 -2.39 -0.02 1.88 16 26 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.08 2.16 6.97 -2.38 -0.02 2.14 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -76.04 285.45 5.01 -71.03 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.11 Total: 17.90 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 2.87 Total: -36.95 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -0.99 Total: -95.88 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.04 5.01 -71.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.804 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds