Wall clock time and date at job start Mon Mar 30 2020 03:58:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30992 * 1
3 3 Si 1.86801 * 119.99798 * 2 1
4 4 H 1.48504 * 109.47098 * 239.99923 * 3 2 1
5 5 H 1.48505 * 109.47116 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47316 * 119.99780 * 3 2 1
7 7 C 1.39735 * 120.00308 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99981 * 180.02562 * 7 2 1
9 9 C 1.41499 * 119.99822 * 0.02562 * 7 2 1
10 10 N 1.34845 * 126.02140 * 6.21046 * 9 7 2
11 11 N 1.28668 * 109.63242 * 180.27460 * 10 9 7
12 12 N 1.40123 * 108.93687 * 359.72719 * 11 10 9
13 13 C 1.46500 * 126.49178 * 180.02562 * 12 11 10
14 14 C 1.53003 * 109.46722 * 269.96700 * 13 12 11
15 15 C 1.52998 * 117.50120 * 243.75031 * 14 13 12
16 16 C 1.53001 * 117.49886 * 175.08555 * 14 13 12
17 17 C 1.35019 * 107.01488 * 359.97438 * 12 11 10
18 18 C 1.50699 * 126.77201 * 180.02562 * 17 12 11
19 19 C 1.52998 * 117.49780 * 48.72180 * 18 17 12
20 20 C 1.53009 * 117.49807 * 117.37848 * 18 17 12
21 21 H 0.96994 * 119.99807 * 0.02562 * 1 2 3
22 22 H 1.08995 * 109.47103 * 29.96283 * 13 12 11
23 23 H 1.08997 * 109.47379 * 149.97064 * 13 12 11
24 24 H 1.09003 * 115.55142 * 29.41934 * 14 13 12
25 25 H 1.09002 * 117.49446 * 359.97438 * 15 14 13
26 26 H 1.08994 * 117.50545 * 145.02130 * 15 14 13
27 27 H 1.09002 * 117.49721 * 214.97582 * 16 14 13
28 28 H 1.08994 * 117.49882 * 359.97438 * 16 14 13
29 29 H 1.08998 * 115.55072 * 263.05086 * 18 17 12
30 30 H 1.09009 * 117.49894 * 215.00334 * 19 18 17
31 31 H 1.09008 * 117.50021 * 0.02562 * 19 18 17
32 32 H 1.09001 * 117.49779 * 359.97438 * 20 18 17
33 33 H 1.08992 * 117.49406 * 144.99986 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 14 2.2439 1.6178 0.0000
4 1 3.0977 1.6965 -1.2125
5 1 1.2788 2.7465 -0.0006
6 1 3.0976 1.6965 1.2125
7 6 2.0087 -1.2101 0.0005
8 1 3.0886 -1.2100 0.0010
9 6 1.3012 -2.4355 0.0005
10 7 -0.0342 -2.5802 -0.1179
11 7 -0.3394 -3.8294 -0.0727
12 7 0.8348 -4.5792 0.0772
13 6 0.9310 -6.0381 0.1704
14 6 0.8352 -6.4627 1.6372
15 6 2.0556 -7.1475 2.2557
16 6 0.7995 -7.9625 1.9376
17 6 1.8608 -3.7026 0.1184
18 6 3.3236 -4.0322 0.2692
19 6 3.9005 -5.1180 -0.6414
20 6 4.2565 -3.6487 -0.8814
21 1 -0.4849 0.8400 -0.0004
22 1 0.1164 -6.4927 -0.3933
23 1 1.8853 -6.3664 -0.2412
24 1 0.2470 -5.8068 2.2791
25 1 2.9267 -7.2958 1.6174
26 1 2.2703 -6.9424 3.3044
27 1 0.1883 -8.2932 2.7774
28 1 0.8438 -8.6467 1.0903
29 1 3.7192 -3.9626 1.2824
30 1 4.6757 -5.7628 -0.2271
31 1 3.2222 -5.5937 -1.3498
32 1 3.8121 -3.1584 -1.7476
33 1 5.2657 -3.3268 -0.6250
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000958545396.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:58:18
Heat of formation + Delta-G solvation = 116.772879 kcal
Electronic energy + Delta-G solvation = -16269.903702 eV
Core-core repulsion = 13719.399193 eV
Total energy + Delta-G solvation = -2550.504508 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 233.122 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.94132 -38.51540 -37.72283 -35.40195 -33.83047 -31.16716 -28.61001 -26.75676
-24.07530 -23.51180 -23.12577 -22.26607 -21.60971 -20.52119 -19.02385 -17.31113
-16.78212 -16.56775 -16.04818 -15.54617 -15.20404 -14.75584 -14.61091 -14.16738
-13.48174 -12.94591 -12.92628 -12.69975 -12.53314 -12.35817 -12.22469 -12.07479
-11.66170 -11.54523 -11.37632 -11.26784 -11.09680 -10.91309 -10.55476 -10.22460
-9.33796 -8.28188 -6.16217 0.99483 1.43778 1.46781 1.56690 1.95568
2.33359 2.35765 2.88453 3.01066 3.53787 3.70157 3.85237 3.89191
4.02233 4.11660 4.14652 4.25251 4.40543 4.60594 4.64596 4.79048
4.80992 4.99602 5.00355 5.11760 5.19458 5.23912 5.27527 5.30267
5.38825 5.51005 5.61316 6.42959 6.47613 6.91879 7.12225 8.29390
8.71921
Molecular weight = 233.12amu
Principal moments of inertia in cm(-1)
A = 0.031621 B = 0.007867 C = 0.006852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 885.275017 B = 3558.204890 C = 4085.497936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.833 5.833
2 C 0.018 3.982
3 Si 0.985 3.015
4 H -0.258 1.258
5 H -0.281 1.281
6 H -0.258 1.258
7 C -0.474 4.474
8 H 0.093 0.907
9 C 0.108 3.892
10 N -0.286 5.286
11 N -0.179 5.179
12 N -0.352 5.352
13 C 0.155 3.845
14 C -0.195 4.195
15 C -0.162 4.162
16 C -0.149 4.149
17 C -0.050 4.050
18 C -0.071 4.071
19 C -0.155 4.155
20 C -0.159 4.159
21 H 0.271 0.729
22 H 0.091 0.909
23 H 0.116 0.884
24 H 0.070 0.930
25 H 0.115 0.885
26 H 0.095 0.905
27 H 0.103 0.897
28 H 0.117 0.883
29 H 0.115 0.885
30 H 0.133 0.867
31 H 0.084 0.916
32 H 0.070 0.930
33 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.029 -13.025 1.840 16.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.462 5.462
2 C -0.195 4.195
3 Si 0.807 3.193
4 H -0.182 1.182
5 H -0.206 1.206
6 H -0.182 1.182
7 C -0.511 4.511
8 H 0.111 0.889
9 C -0.026 4.026
10 N -0.155 5.155
11 N -0.154 5.154
12 N -0.146 5.146
13 C 0.034 3.966
14 C -0.215 4.215
15 C -0.198 4.198
16 C -0.186 4.186
17 C -0.185 4.185
18 C -0.091 4.091
19 C -0.192 4.192
20 C -0.197 4.197
21 H 0.081 0.919
22 H 0.110 0.890
23 H 0.134 0.866
24 H 0.088 0.912
25 H 0.134 0.866
26 H 0.114 0.886
27 H 0.121 0.879
28 H 0.136 0.864
29 H 0.132 0.868
30 H 0.151 0.849
31 H 0.102 0.898
32 H 0.089 0.911
33 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 8.189 -13.011 1.683 15.465
hybrid contribution 0.516 1.123 0.185 1.250
sum 8.705 -11.888 1.868 14.852
Atomic orbital electron populations
1.70190 1.08857 1.28588 1.38541 1.26794 0.95543 1.04429 0.92755
0.85222 0.78257 0.75884 0.79980 1.18199 1.20579 1.18183 1.18869
0.94158 0.88492 1.49555 0.88869 1.19585 0.87772 0.93866 1.01331
1.75028 1.15753 1.06822 1.17871 1.81367 1.07073 0.98646 1.28309
1.49880 1.05420 1.07488 1.51771 1.21523 1.04609 0.74281 0.96209
1.22429 1.05708 0.97584 0.95751 1.23170 0.92322 1.02259 1.02082
1.23090 1.00570 0.90804 1.04147 1.21316 0.91093 0.89355 1.16758
1.19908 0.85967 1.06423 0.96839 1.23129 1.03008 0.91599 1.01474
1.22920 0.99912 0.97972 0.98846 0.91922 0.89039 0.86604 0.91166
0.86647 0.88634 0.87857 0.86429 0.86764 0.84909 0.89771 0.91150
0.86128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -50.85 11.94 21.80 0.26 -50.59 16
2 C 0.02 0.99 5.49 85.18 0.47 1.46 16
3 Si 0.99 41.87 29.56 68.60 2.03 43.90 16
4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16
5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16
7 C -0.47 -26.97 9.16 23.44 0.21 -26.76 16
8 H 0.09 4.83 7.49 -2.91 -0.02 4.81 16
9 C 0.11 6.27 6.71 39.67 0.27 6.53 16
10 N -0.29 -18.02 10.58 -52.51 -0.56 -18.57 16
11 N -0.18 -10.08 13.74 37.02 0.51 -9.57 16
12 N -0.35 -15.94 3.63 -331.64 -1.20 -17.14 16
13 C 0.16 4.89 6.57 86.38 0.57 5.46 16
14 C -0.19 -5.48 6.01 -10.79 -0.06 -5.54 16
15 C -0.16 -3.27 10.18 30.62 0.31 -2.96 16
16 C -0.15 -2.78 10.26 30.62 0.31 -2.47 16
17 C -0.05 -2.34 6.54 42.25 0.28 -2.07 16
18 C -0.07 -2.46 5.70 -11.54 -0.07 -2.53 16
19 C -0.16 -3.85 8.90 30.62 0.27 -3.58 16
20 C -0.16 -4.81 9.99 30.62 0.31 -4.50 16
21 H 0.27 15.31 8.30 -92.71 -0.77 14.54 16
22 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16
23 H 0.12 2.93 5.08 -2.39 -0.01 2.92 16
24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
25 H 0.12 1.90 8.03 -2.39 -0.02 1.88 16
26 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
28 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16
29 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16
30 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16
31 H 0.08 2.16 6.97 -2.38 -0.02 2.14 16
32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
33 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16
Total: -1.00 -76.04 285.45 5.01 -71.03
By element:
Atomic # 1 Polarization: 16.79 SS G_CDS: 1.11 Total: 17.90 kcal
Atomic # 6 Polarization: -39.81 SS G_CDS: 2.87 Total: -36.95 kcal
Atomic # 7 Polarization: -94.89 SS G_CDS: -0.99 Total: -95.88 kcal
Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal
Total: -76.04 5.01 -71.03 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000958545396.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 187.804 kcal
(2) G-P(sol) polarization free energy of solvation -76.041 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) 116.773 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds