Wall clock time and date at job start Mon Mar 30 2020 03:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47405 * 2 1 4 4 N 1.33682 * 126.38138 * 270.13059 * 3 2 1 5 5 C 1.30594 * 109.10548 * 180.28475 * 4 3 2 6 6 O 1.33868 * 109.44884 * 359.75119 * 5 4 3 7 7 C 1.35362 * 107.73513 * 359.97438 * 6 5 4 8 8 C 1.46139 * 126.76653 * 179.97438 * 7 6 5 9 9 N 1.32348 * 125.32476 * 180.02562 * 8 7 6 10 10 C 1.32536 * 109.23407 * 179.75805 * 9 8 7 11 11 C 1.39948 * 107.37062 * 0.37992 * 10 9 8 12 12 C 1.39393 * 126.76751 * 179.88713 * 11 10 9 13 13 H 1.08002 * 120.00339 * 359.71775 * 12 11 10 14 14 C 1.40167 * 119.99813 * 179.43291 * 12 11 10 15 15 N 1.30814 * 119.99812 * 0.28142 * 14 12 11 16 16 Si 1.86803 * 119.99897 * 180.27990 * 14 12 11 17 17 H 1.48508 * 109.46872 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 120.00120 * 16 14 12 19 19 H 1.48506 * 109.46902 * 240.00371 * 16 14 12 20 20 O 1.34769 * 125.31615 * 0.02562 * 8 7 6 21 21 H 1.09003 * 109.47334 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47007 * 300.00142 * 1 2 3 23 23 H 1.09007 * 109.46953 * 59.99918 * 1 2 3 24 24 H 1.09007 * 109.46779 * 240.00218 * 2 1 3 25 25 H 1.08996 * 109.47153 * 120.00509 * 2 1 3 26 26 H 1.08005 * 125.27440 * 179.70653 * 5 4 3 27 27 H 1.07996 * 126.31372 * 180.25297 * 10 9 8 28 28 H 0.97000 * 119.99167 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2944 2.1692 -1.0763 5 6 2.7168 3.3425 -0.6884 6 8 2.7353 3.3898 0.6493 7 6 2.3046 2.1922 1.1102 8 6 2.1629 1.7928 2.5088 9 7 1.7385 0.6114 2.9280 10 6 1.7391 0.5923 4.2533 11 6 2.1849 1.8453 4.6889 12 6 2.3379 2.2635 6.0098 13 1 2.0977 1.5913 6.8204 14 6 2.8092 3.5543 6.2861 15 7 3.1002 4.3683 5.3044 16 14 3.0217 4.1120 8.0563 17 1 2.6257 3.0124 8.9726 18 1 4.4431 4.4688 8.2956 19 1 2.1643 5.2982 8.3078 20 8 2.4440 2.5700 3.5733 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.0069 4.1494 -1.3452 27 1 1.4473 -0.2366 4.8811 28 1 3.4260 5.2617 5.4957 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259985735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:22 Heat of formation + Delta-G solvation = 16.177682 kcal Electronic energy + Delta-G solvation = -15943.262475 eV Core-core repulsion = 13154.844075 eV Total energy + Delta-G solvation = -2788.418400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.49871 -41.01302 -35.00840 -34.24167 -32.94334 -32.32423 -30.24066 -28.51639 -25.34291 -23.58117 -22.39713 -21.04056 -20.45453 -19.63533 -17.78205 -16.90003 -16.02244 -15.65864 -15.25371 -14.57531 -14.23766 -13.83741 -13.38216 -13.15103 -12.66552 -12.31889 -12.05130 -11.62594 -11.51401 -11.08078 -10.96901 -10.64020 -10.52758 -10.44178 -10.07761 -9.99493 -9.77378 -9.10134 -8.67275 -7.28768 -7.27275 -4.81817 1.68393 2.65974 2.82664 2.89880 3.09343 3.25318 3.42192 3.57000 4.19872 4.37884 4.72725 4.81424 5.40162 5.52716 5.89590 5.96129 6.01449 6.29809 6.35208 6.42311 6.58824 6.59503 6.73833 6.77325 6.82213 7.01982 7.31220 7.73665 7.86960 8.12993 8.20234 8.33835 9.32078 9.69214 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.039375 B = 0.007167 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.945275 B = 3905.953853 C = 4521.845343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.030 4.030 3 C -0.023 4.023 4 N -0.475 5.475 5 C 0.123 3.877 6 O -0.197 6.197 7 C 0.106 3.894 8 C 0.043 3.957 9 N -0.397 5.397 10 C -0.197 4.197 11 C 0.184 3.816 12 C -0.407 4.407 13 H 0.117 0.883 14 C 0.058 3.942 15 N -0.747 5.747 16 Si 0.933 3.067 17 H -0.253 1.253 18 H -0.267 1.267 19 H -0.267 1.267 20 O -0.181 6.181 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.242 0.758 27 H 0.162 0.838 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 -0.494 -2.341 2.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.147 4.147 4 N -0.203 5.203 5 C -0.101 4.101 6 O -0.082 6.082 7 C 0.052 3.948 8 C -0.145 4.145 9 N -0.126 5.126 10 C -0.351 4.351 11 C 0.128 3.872 12 C -0.435 4.435 13 H 0.135 0.865 14 C -0.167 4.167 15 N -0.371 5.371 16 Si 0.755 3.245 17 H -0.176 1.176 18 H -0.192 1.192 19 H -0.192 1.192 20 O -0.069 6.069 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.257 0.743 27 H 0.179 0.821 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.712 -0.764 -3.587 3.736 hybrid contribution 0.503 1.415 1.802 2.346 sum -0.209 0.651 -1.785 1.911 Atomic orbital electron populations 1.21607 0.95199 1.00982 1.01547 1.19768 0.95581 0.88464 1.02973 1.21661 1.08708 0.98671 0.85620 1.69961 1.15410 1.03054 1.31906 1.27591 1.04911 0.98248 0.79351 1.84516 1.65486 1.34265 1.23929 1.19384 1.02051 0.83289 0.90097 1.20174 1.20849 0.88892 0.84599 1.69446 1.12033 1.18243 1.12921 1.23068 1.23100 0.99389 0.89574 1.20797 0.91194 0.88645 0.86588 1.18996 1.36255 0.98704 0.89557 0.86502 1.26374 0.92842 0.96222 1.01243 1.69792 1.25793 1.07130 1.34427 0.85821 0.79219 0.79751 0.79664 1.17647 1.19200 1.19204 1.84963 1.69305 1.39445 1.13230 0.92778 0.92400 0.93560 0.91680 0.88670 0.74256 0.82056 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 37.16 0.37 -1.92 15 2 C -0.03 -0.56 6.04 -27.89 -0.17 -0.72 15 3 C -0.02 -0.48 6.47 -81.91 -0.53 -1.01 15 4 N -0.47 -9.32 11.25 -10.48 -0.12 -9.44 15 5 C 0.12 2.17 13.19 52.24 0.69 2.86 15 6 O -0.20 -4.35 10.80 3.85 0.04 -4.31 15 7 C 0.11 2.54 7.34 -36.54 -0.27 2.28 15 8 C 0.04 1.13 8.07 -14.16 -0.11 1.01 15 9 N -0.40 -9.93 9.32 -10.97 -0.10 -10.03 15 10 C -0.20 -4.85 11.97 -16.61 -0.20 -5.05 15 11 C 0.18 4.88 6.82 -38.51 -0.26 4.62 15 12 C -0.41 -9.92 9.33 -38.43 -0.36 -10.28 15 13 H 0.12 2.53 7.85 -52.49 -0.41 2.12 15 14 C 0.06 1.35 5.50 -17.26 -0.09 1.25 15 15 N -0.75 -18.78 12.04 55.56 0.67 -18.12 15 16 Si 0.93 16.69 29.56 -169.99 -5.03 11.66 15 17 H -0.25 -4.34 7.11 56.52 0.40 -3.94 15 18 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 19 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 20 O -0.18 -5.14 9.19 0.88 0.01 -5.13 15 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.09 1.88 6.62 -51.93 -0.34 1.54 15 26 H 0.24 2.74 8.06 -52.48 -0.42 2.32 15 27 H 0.16 3.43 8.06 -52.49 -0.42 3.01 15 28 H 0.29 6.52 8.30 -40.82 -0.34 6.19 15 LS Contribution 259.54 15.07 3.91 3.91 Total: -1.00 -29.83 259.54 -3.98 -33.81 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.43 Total: 4.60 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.94 Total: -6.96 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.45 Total: -37.58 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.05 Total: -9.44 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.83 -3.98 -33.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.987 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds