Wall clock time and date at job start Mon Mar 30 2020 03:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47405 * 2 1 4 4 N 1.33682 * 126.38138 * 270.13059 * 3 2 1 5 5 C 1.30594 * 109.10548 * 180.28475 * 4 3 2 6 6 O 1.33868 * 109.44884 * 359.75119 * 5 4 3 7 7 C 1.35362 * 107.73513 * 359.97438 * 6 5 4 8 8 C 1.46139 * 126.76653 * 179.97438 * 7 6 5 9 9 N 1.32348 * 125.32476 * 180.02562 * 8 7 6 10 10 C 1.32536 * 109.23407 * 179.75805 * 9 8 7 11 11 C 1.39948 * 107.37062 * 0.37992 * 10 9 8 12 12 C 1.39393 * 126.76751 * 179.88713 * 11 10 9 13 13 H 1.08002 * 120.00339 * 359.71775 * 12 11 10 14 14 C 1.40167 * 119.99813 * 179.43291 * 12 11 10 15 15 N 1.30814 * 119.99812 * 0.28142 * 14 12 11 16 16 Si 1.86803 * 119.99897 * 180.27990 * 14 12 11 17 17 H 1.48508 * 109.46872 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 120.00120 * 16 14 12 19 19 H 1.48506 * 109.46902 * 240.00371 * 16 14 12 20 20 O 1.34769 * 125.31615 * 0.02562 * 8 7 6 21 21 H 1.09003 * 109.47334 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47007 * 300.00142 * 1 2 3 23 23 H 1.09007 * 109.46953 * 59.99918 * 1 2 3 24 24 H 1.09007 * 109.46779 * 240.00218 * 2 1 3 25 25 H 1.08996 * 109.47153 * 120.00509 * 2 1 3 26 26 H 1.08005 * 125.27440 * 179.70653 * 5 4 3 27 27 H 1.07996 * 126.31372 * 180.25297 * 10 9 8 28 28 H 0.97000 * 119.99167 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2944 2.1692 -1.0763 5 6 2.7168 3.3425 -0.6884 6 8 2.7353 3.3898 0.6493 7 6 2.3046 2.1922 1.1102 8 6 2.1629 1.7928 2.5088 9 7 1.7385 0.6114 2.9280 10 6 1.7391 0.5923 4.2533 11 6 2.1849 1.8453 4.6889 12 6 2.3379 2.2635 6.0098 13 1 2.0977 1.5913 6.8204 14 6 2.8092 3.5543 6.2861 15 7 3.1002 4.3683 5.3044 16 14 3.0217 4.1120 8.0563 17 1 2.6257 3.0124 8.9726 18 1 4.4431 4.4688 8.2956 19 1 2.1643 5.2982 8.3078 20 8 2.4440 2.5700 3.5733 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.0069 4.1494 -1.3452 27 1 1.4473 -0.2366 4.8811 28 1 3.4260 5.2617 5.4957 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259985735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:22 Heat of formation + Delta-G solvation = -6.914961 kcal Electronic energy + Delta-G solvation = -15944.263847 eV Core-core repulsion = 13154.844075 eV Total energy + Delta-G solvation = -2789.419772 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.13368 -42.93051 -36.62610 -36.03284 -34.84700 -33.88841 -32.00885 -30.23851 -27.09881 -25.15579 -24.04669 -22.81888 -22.24733 -21.33816 -19.65563 -18.61082 -17.71457 -17.32437 -16.87841 -16.51915 -15.74548 -15.52568 -14.90246 -14.82928 -14.20274 -14.01668 -13.56304 -13.26747 -13.14134 -12.92065 -12.38904 -12.12878 -12.02508 -11.95654 -11.86281 -11.59809 -11.52928 -10.99611 -10.45447 -9.10686 -9.02116 -6.68867 -0.00183 1.07138 1.35543 1.55172 1.57377 1.65970 1.76350 2.07652 2.32564 2.58279 2.96860 3.31869 3.80861 3.90231 4.39334 4.48338 4.55037 4.62284 4.76913 4.84088 4.87049 5.02959 5.05004 5.24296 5.35423 5.45998 5.54630 5.89168 6.00428 6.27163 6.37358 6.72351 7.40003 7.98146 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.039375 B = 0.007167 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.945275 B = 3905.953853 C = 4521.845343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.033 4.033 3 C -0.003 4.003 4 N -0.493 5.493 5 C 0.162 3.838 6 O -0.218 6.218 7 C 0.047 3.953 8 C 0.021 3.979 9 N -0.398 5.398 10 C -0.213 4.213 11 C 0.147 3.853 12 C -0.425 4.425 13 H 0.140 0.860 14 C 0.013 3.987 15 N -0.795 5.795 16 Si 1.018 2.982 17 H -0.237 1.237 18 H -0.262 1.262 19 H -0.262 1.262 20 O -0.211 6.211 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.302 0.698 27 H 0.188 0.812 28 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -0.257 -2.511 2.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.126 4.126 4 N -0.221 5.221 5 C -0.062 4.062 6 O -0.105 6.105 7 C -0.006 4.006 8 C -0.167 4.167 9 N -0.127 5.127 10 C -0.366 4.366 11 C 0.092 3.908 12 C -0.452 4.452 13 H 0.158 0.842 14 C -0.207 4.207 15 N -0.420 5.420 16 Si 0.834 3.166 17 H -0.159 1.159 18 H -0.187 1.187 19 H -0.187 1.187 20 O -0.102 6.102 21 H 0.101 0.899 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.317 0.683 27 H 0.205 0.795 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.706 -0.579 -3.764 3.873 hybrid contribution 0.524 1.405 1.609 2.200 sum -0.181 0.827 -2.154 2.315 Atomic orbital electron populations 1.21531 0.93746 1.02589 1.00559 1.19896 0.96755 0.87128 1.03332 1.22122 1.05898 0.99315 0.85237 1.70067 1.17154 1.03858 1.31012 1.29134 1.00047 0.98710 0.78277 1.84509 1.65871 1.34113 1.25975 1.19485 1.06437 0.84829 0.89872 1.20844 1.21231 0.89188 0.85456 1.69425 1.12309 1.17882 1.13052 1.23494 1.23501 0.99761 0.89842 1.21440 0.92611 0.89538 0.87220 1.19611 1.36160 1.00047 0.89416 0.84219 1.27576 0.91335 0.95537 1.06265 1.69886 1.26654 1.08020 1.37392 0.84612 0.79242 0.79552 0.73151 1.15886 1.18665 1.18671 1.84911 1.70165 1.40809 1.14292 0.89932 0.95124 0.92658 0.89243 0.90246 0.68300 0.79465 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.89 71.98 0.71 -3.42 15 2 C -0.03 -1.21 6.04 29.85 0.18 -1.03 15 3 C 0.00 -0.11 6.47 42.20 0.27 0.16 15 4 N -0.49 -18.32 11.25 -301.76 -3.39 -21.71 15 5 C 0.16 5.30 13.19 130.43 1.72 7.02 15 6 O -0.22 -9.64 10.80 -9.15 -0.10 -9.73 15 7 C 0.05 2.32 7.34 24.24 0.18 2.50 15 8 C 0.02 1.18 8.07 86.67 0.70 1.88 15 9 N -0.40 -20.62 9.32 -301.92 -2.81 -23.43 15 10 C -0.21 -10.81 11.97 85.00 1.02 -9.79 15 11 C 0.15 8.12 6.82 22.96 0.16 8.27 15 12 C -0.43 -21.04 9.33 23.02 0.21 -20.83 15 13 H 0.14 5.98 7.85 -2.91 -0.02 5.96 15 14 C 0.01 0.61 5.50 85.31 0.47 1.08 15 15 N -0.79 -41.01 12.04 21.87 0.26 -40.75 15 16 Si 1.02 33.38 29.56 68.60 2.03 35.41 15 17 H -0.24 -7.06 7.11 99.48 0.71 -6.35 15 18 H -0.26 -8.33 7.11 99.48 0.71 -7.62 15 19 H -0.26 -8.33 7.11 99.48 0.71 -7.63 15 20 O -0.21 -12.65 9.19 -19.78 -0.18 -12.83 15 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.05 1.68 8.14 -2.38 -0.02 1.66 15 24 H 0.09 2.79 8.14 -2.38 -0.02 2.77 15 25 H 0.08 3.16 6.62 -2.39 -0.02 3.15 15 26 H 0.30 5.37 8.06 -2.91 -0.02 5.35 15 27 H 0.19 8.07 8.06 -2.91 -0.02 8.05 15 28 H 0.30 13.73 8.30 -92.71 -0.77 12.96 15 Total: -1.00 -68.18 259.54 2.61 -65.57 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 1.19 Total: 21.62 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 5.62 Total: -14.15 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -5.94 Total: -85.89 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.28 Total: -22.56 kcal Atomic # 14 Polarization: 33.38 SS G_CDS: 2.03 Total: 35.41 kcal Total: -68.18 2.61 -65.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.654 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds