Wall clock time and date at job start Mon Mar 30 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 C 1.38369 * 111.00235 * 236.04598 * 2 1 3 13 13 C 1.36474 * 120.27015 * 123.67596 * 12 2 1 14 14 N 1.33042 * 121.03385 * 179.70850 * 13 12 2 15 15 C 1.31329 * 121.44737 * 0.57147 * 14 13 12 16 16 C 1.40541 * 119.78293 * 359.71768 * 15 14 13 17 17 N 1.32381 * 134.52615 * 180.02562 * 16 15 14 18 18 N 1.28622 * 110.22027 * 179.97438 * 17 16 15 19 19 N 1.29076 * 110.84677 * 359.97438 * 18 17 16 20 20 N 1.36287 * 120.27177 * 303.94867 * 12 2 1 21 21 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 22 22 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 24 24 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 25 25 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 26 26 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 27 27 H 1.08001 * 119.48849 * 359.97438 * 13 12 2 28 28 H 1.08003 * 120.10943 * 179.68863 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 0.8155 3.2443 3.9914 10 1 2.8246 4.5945 3.8431 11 1 0.7548 5.3877 2.8596 12 6 1.9649 -0.7215 -1.0715 13 6 2.8216 -0.1357 -1.9578 14 7 3.3121 -0.8169 -2.9900 15 6 2.9838 -2.0707 -3.2018 16 6 2.1003 -2.7191 -2.3219 17 7 1.5847 -3.9365 -2.2540 18 7 0.8101 -4.0349 -1.2319 19 7 0.7669 -2.9220 -0.5795 20 7 1.5975 -2.0212 -1.2536 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.0796 1.3446 -0.1082 25 1 1.5610 1.9274 -0.8310 26 1 2.9863 4.9181 0.7769 27 1 3.1094 0.8956 -1.8166 28 1 3.3910 -2.6016 -4.0496 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044610142.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:28 Heat of formation + Delta-G solvation = 179.219772 kcal Electronic energy + Delta-G solvation = -16080.844292 eV Core-core repulsion = 13364.081430 eV Total energy + Delta-G solvation = -2716.762862 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.092 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.43279 -39.97718 -37.40407 -34.29671 -32.83543 -32.23655 -30.14414 -28.04812 -26.29532 -25.11477 -24.24165 -22.92161 -21.18723 -19.05979 -18.04218 -17.05173 -16.85725 -16.09433 -15.81937 -14.95087 -14.57225 -13.94818 -13.61713 -13.25758 -12.86192 -12.53024 -12.35035 -12.15627 -11.89445 -11.38564 -11.18358 -11.02060 -10.94424 -10.53356 -10.35693 -10.27305 -9.82863 -9.24021 -8.74766 -7.72290 -6.40285 -4.45562 0.37161 0.54141 1.57013 2.18357 3.12349 3.21106 3.23762 3.26768 3.53883 3.85720 4.02632 4.18692 4.44486 4.84786 4.97451 5.17329 5.37020 5.45805 5.60018 5.66368 5.83375 6.11056 6.19021 6.51745 6.59829 7.11658 7.15644 7.52851 7.62522 7.85618 8.37963 8.58924 9.21391 10.70205 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.044127 B = 0.006789 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.376618 B = 4123.408521 C = 4649.164178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.469 5.469 3 C 0.185 3.815 4 C -0.527 4.527 5 H 0.070 0.930 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.906 3.094 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.328 3.672 13 C -0.025 4.025 14 N -0.383 5.383 15 C 0.101 3.899 16 C 0.213 3.787 17 N -0.321 5.321 18 N -0.016 5.016 19 N -0.100 5.100 20 N -0.297 5.297 21 H 0.040 0.960 22 H 0.071 0.929 23 H 0.101 0.899 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.268 0.732 27 H 0.207 0.793 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 -6.034 -5.720 8.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.181 5.181 3 C 0.063 3.937 4 C -0.565 4.565 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.112 3.888 13 C -0.179 4.179 14 N -0.095 5.095 15 C -0.081 4.081 16 C -0.044 4.044 17 N -0.183 5.183 18 N -0.009 5.009 19 N -0.084 5.084 20 N -0.083 5.083 21 H 0.059 0.941 22 H 0.090 0.910 23 H 0.119 0.881 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.223 0.777 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.023 -6.658 -5.024 8.404 hybrid contribution -0.383 1.178 0.809 1.479 sum -1.406 -5.481 -4.215 7.055 Atomic orbital electron populations 1.22525 0.82687 1.02587 1.03643 1.58346 1.10189 1.19077 1.30459 1.20355 0.96737 0.77058 0.99552 1.20979 1.37079 0.97411 1.01044 0.91159 1.24945 0.94528 0.96954 0.97503 1.69916 1.36855 1.11881 1.34019 0.86294 0.78432 0.79302 0.82626 1.19474 1.20639 1.20716 1.20353 0.96476 0.80998 0.90932 1.23089 1.01705 1.02576 0.90516 1.67920 1.17796 1.06204 1.17568 1.22632 0.96096 0.90407 0.98973 1.24230 0.98935 0.90107 0.91096 1.75056 1.13390 1.13870 1.15998 1.77907 1.09176 1.14610 0.99200 1.82750 1.14375 0.93847 1.17423 1.49082 1.29758 1.10319 1.19162 0.94113 0.91038 0.88052 0.93018 0.95656 0.92237 0.77658 0.78725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.21 60.07 0.55 1.08 15 2 N -0.47 -9.13 4.81 -182.33 -0.88 -10.01 15 3 C 0.19 4.03 3.40 -4.97 -0.02 4.01 15 4 C -0.53 -12.92 8.51 -34.44 -0.29 -13.22 15 5 H 0.07 1.73 7.10 -52.48 -0.37 1.36 15 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 7 N -0.89 -23.23 13.29 55.43 0.74 -22.49 15 8 Si 0.91 19.63 29.54 -169.99 -5.02 14.61 15 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 12 C 0.33 5.84 6.46 -153.17 -0.99 4.85 15 13 C -0.03 -0.41 9.93 -17.66 -0.18 -0.59 15 14 N -0.38 -5.61 10.41 -12.94 -0.13 -5.74 15 15 C 0.10 1.32 11.32 -16.90 -0.19 1.13 15 16 C 0.21 3.39 8.07 -156.28 -1.26 2.13 15 17 N -0.32 -5.43 12.26 31.06 0.38 -5.05 15 18 N -0.02 -0.28 13.36 60.35 0.81 0.52 15 19 N -0.10 -1.86 12.22 60.35 0.74 -1.12 15 20 N -0.30 -5.27 3.81 -11.63 -0.04 -5.31 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.07 1.22 6.17 -51.92 -0.32 0.90 15 23 H 0.10 1.80 6.86 -51.93 -0.36 1.45 15 24 H 0.05 1.17 6.68 -51.93 -0.35 0.82 15 25 H 0.03 0.57 7.90 -51.93 -0.41 0.16 15 26 H 0.27 6.65 8.31 -40.82 -0.34 6.31 15 27 H 0.21 3.36 5.66 -52.49 -0.30 3.07 15 28 H 0.20 1.71 8.06 -52.48 -0.42 1.29 15 LS Contribution 248.26 15.07 3.74 3.74 Total: -1.00 -26.86 248.26 -4.23 -31.09 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -2.08 Total: -1.17 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.47 Total: 0.93 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 1.60 Total: -49.21 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.86 -4.23 -31.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044610142.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.312 kcal (2) G-P(sol) polarization free energy of solvation -26.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds