Wall clock time and date at job start Mon Mar 30 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35070 * 126.07652 * 2 1 4 4 N 1.35050 * 107.98598 * 180.26003 * 3 2 1 5 5 H 0.97002 * 125.93719 * 179.71788 * 4 3 2 6 6 N 1.40072 * 108.13808 * 359.72448 * 4 3 2 7 7 C 1.31649 * 108.10072 * 359.97438 * 6 4 3 8 8 C 1.48406 * 126.03524 * 180.02562 * 7 6 4 9 9 N 1.30777 * 126.41161 * 180.02562 * 8 7 6 10 10 O 1.21284 * 110.09819 * 180.02562 * 9 8 7 11 11 C 1.33673 * 110.02943 * 0.02562 * 10 9 8 12 12 C 1.50698 * 126.44113 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47166 * 270.02775 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99792 * 179.72330 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47088 * 89.99795 * 17 15 13 19 19 H 1.48495 * 109.47293 * 209.99997 * 17 15 13 20 20 H 1.48507 * 109.47015 * 329.99955 * 17 15 13 21 21 N 1.30985 * 107.12157 * 0.26072 * 11 10 9 22 22 H 1.09003 * 109.47401 * 270.20407 * 1 2 3 23 23 H 1.08998 * 109.47343 * 30.20448 * 1 2 3 24 24 H 1.08996 * 109.47227 * 150.20578 * 1 2 3 25 25 H 1.07994 * 126.00428 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.46890 * 150.02765 * 12 11 10 27 27 H 1.09002 * 109.46875 * 30.02568 * 12 11 10 28 28 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3023 1.0917 0.0000 4 7 3.5860 0.6723 -0.0058 5 1 4.3711 1.2421 -0.0111 6 7 3.5872 -0.7284 -0.0032 7 6 2.3363 -1.1384 0.0046 8 6 1.8805 -2.5508 0.0104 9 7 0.6405 -2.9663 0.0177 10 8 0.6072 -4.1787 0.0213 11 6 1.8500 -4.6708 0.0172 12 6 2.2360 -6.1275 0.0203 13 6 2.3705 -6.6085 1.4420 14 1 2.1946 -5.9275 2.2615 15 6 2.7183 -7.9183 1.6967 16 7 2.8410 -8.3367 2.9375 17 14 3.0232 -9.0962 0.2793 18 1 4.4575 -9.0501 -0.1026 19 1 2.6661 -10.4758 0.6966 20 1 2.1885 -8.6988 -0.8829 21 7 2.6694 -3.6489 0.0163 22 1 -0.3634 0.0037 1.0277 23 1 -0.3634 0.8881 -0.5170 24 1 -0.3633 -0.8918 -0.5106 25 1 1.9700 2.1192 -0.0004 26 1 3.1872 -6.2524 -0.4971 27 1 1.4666 -6.7083 -0.4885 28 1 3.0852 -9.2582 3.1166 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259849459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:00 Heat of formation + Delta-G solvation = 138.684713 kcal Electronic energy + Delta-G solvation = -15467.953936 eV Core-core repulsion = 12717.140591 eV Total energy + Delta-G solvation = -2750.813346 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.85297 -41.25190 -35.33920 -33.99799 -32.76338 -31.86505 -31.07323 -29.00505 -26.50930 -24.68750 -23.78733 -21.80307 -20.94431 -19.31910 -17.85546 -17.67390 -16.72746 -16.67122 -14.94812 -14.75803 -14.57928 -13.86933 -13.45862 -13.10711 -12.76625 -12.63824 -12.33922 -12.00394 -11.59599 -11.52614 -11.11175 -10.77451 -10.69916 -10.37285 -10.29898 -9.79169 -9.53190 -8.91439 -8.73070 -8.53017 -6.21559 -4.25786 1.32130 1.92530 2.38368 2.60256 3.22915 3.29661 3.30875 3.39999 3.60888 3.92394 4.28410 4.36253 4.80452 5.10877 5.18031 5.20216 5.50230 5.74781 5.79108 5.90911 6.15400 6.30027 6.41684 6.55002 6.64013 6.84529 7.10997 7.34244 7.47479 8.25796 8.77758 8.79023 9.32378 10.90638 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.047437 B = 0.005553 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.114198 B = 5041.357166 C = 5258.962817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.206 4.206 3 C 0.051 3.949 4 N -0.470 5.470 5 H 0.443 0.557 6 N -0.241 5.241 7 C 0.160 3.840 8 C 0.232 3.768 9 N -0.378 5.378 10 O 0.074 5.926 11 C 0.245 3.755 12 C 0.069 3.931 13 C -0.528 4.528 14 H 0.078 0.922 15 C 0.079 3.921 16 N -0.888 5.888 17 Si 0.878 3.122 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.261 1.261 21 N -0.480 5.480 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.182 0.818 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 16.026 -7.638 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.219 4.219 3 C -0.095 4.095 4 N -0.180 5.180 5 H 0.288 0.712 6 N -0.068 5.068 7 C -0.007 4.007 8 C -0.040 4.040 9 N -0.090 5.090 10 O 0.015 5.985 11 C 0.026 3.974 12 C 0.030 3.970 13 C -0.567 4.567 14 H 0.096 0.904 15 C -0.125 4.125 16 N -0.524 5.524 17 Si 0.704 3.296 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.185 1.185 21 N -0.214 5.214 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.199 0.801 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.627 16.241 -7.518 17.971 hybrid contribution -0.075 -0.178 -0.428 0.470 sum -1.702 16.063 -7.946 18.001 Atomic orbital electron populations 1.20161 0.88500 1.02735 1.02196 1.20120 0.97727 0.90134 1.13901 1.22284 0.84272 0.99865 1.03052 1.46258 1.07411 1.05332 1.58997 0.71217 1.77770 1.18635 0.88336 1.22092 1.18672 0.90890 0.88507 1.02623 1.22357 0.85794 0.92576 1.03292 1.74776 1.20240 0.92146 1.21808 1.85271 1.33174 1.14207 1.65868 1.29484 0.77940 1.00080 0.89911 1.18602 0.98721 0.78551 1.01090 1.20629 1.49947 0.97053 0.89055 0.90393 1.24861 0.94039 0.97660 0.95900 1.69869 1.46502 1.17334 1.18728 0.86805 0.79490 0.80614 0.82719 1.19675 1.20753 1.18527 1.72169 1.30841 0.96433 1.21906 0.91735 0.92015 0.90538 0.80110 0.91775 0.92269 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.95 36.00 0.36 -0.58 15 2 C -0.21 -2.89 6.12 -104.76 -0.64 -3.53 15 3 C 0.05 0.53 11.88 -17.26 -0.21 0.32 15 4 N -0.47 -5.35 7.35 30.42 0.22 -5.12 15 5 H 0.44 3.17 8.96 -182.62 -1.64 1.53 15 6 N -0.24 -4.18 12.74 33.43 0.43 -3.75 15 7 C 0.16 2.90 7.18 -82.77 -0.59 2.31 15 8 C 0.23 4.86 8.06 -156.11 -1.26 3.60 15 9 N -0.38 -7.67 10.42 30.97 0.32 -7.35 15 10 O 0.07 1.55 11.29 18.03 0.20 1.76 15 11 C 0.24 5.49 7.69 -12.98 -0.10 5.39 15 12 C 0.07 1.59 4.67 -29.04 -0.14 1.45 15 13 C -0.53 -14.54 9.65 -34.44 -0.33 -14.87 15 14 H 0.08 2.39 7.98 -52.49 -0.42 1.97 15 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 16 N -0.89 -26.26 13.96 55.43 0.77 -25.48 15 17 Si 0.88 19.94 27.47 -169.99 -4.67 15.28 15 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 20 H -0.26 -5.48 6.54 56.52 0.37 -5.11 15 21 N -0.48 -11.08 11.58 -9.87 -0.11 -11.20 15 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.08 1.06 6.69 -51.93 -0.35 0.72 15 25 H 0.18 0.96 8.06 -52.49 -0.42 0.54 15 26 H 0.06 1.42 7.57 -51.93 -0.39 1.02 15 27 H 0.06 1.24 7.20 -51.93 -0.37 0.87 15 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 257.28 15.07 3.88 3.88 Total: -1.00 -32.90 257.28 -5.57 -38.47 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -3.61 Total: -2.65 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.01 Total: -3.82 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 1.63 Total: -52.91 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.76 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.28 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.90 -5.57 -38.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.156 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds