Wall clock time and date at job start Mon Mar 30 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35070 * 126.07652 * 2 1 4 4 N 1.35050 * 107.98598 * 180.26003 * 3 2 1 5 5 H 0.97002 * 125.93719 * 179.71788 * 4 3 2 6 6 N 1.40072 * 108.13808 * 359.72448 * 4 3 2 7 7 C 1.31649 * 108.10072 * 359.97438 * 6 4 3 8 8 C 1.48406 * 126.03524 * 180.02562 * 7 6 4 9 9 N 1.30777 * 126.41161 * 180.02562 * 8 7 6 10 10 O 1.21284 * 110.09819 * 180.02562 * 9 8 7 11 11 C 1.33673 * 110.02943 * 0.02562 * 10 9 8 12 12 C 1.50698 * 126.44113 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47166 * 270.02775 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99792 * 179.72330 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47088 * 89.99795 * 17 15 13 19 19 H 1.48495 * 109.47293 * 209.99997 * 17 15 13 20 20 H 1.48507 * 109.47015 * 329.99955 * 17 15 13 21 21 N 1.30985 * 107.12157 * 0.26072 * 11 10 9 22 22 H 1.09003 * 109.47401 * 270.20407 * 1 2 3 23 23 H 1.08998 * 109.47343 * 30.20448 * 1 2 3 24 24 H 1.08996 * 109.47227 * 150.20578 * 1 2 3 25 25 H 1.07994 * 126.00428 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.46890 * 150.02765 * 12 11 10 27 27 H 1.09002 * 109.46875 * 30.02568 * 12 11 10 28 28 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3023 1.0917 0.0000 4 7 3.5860 0.6723 -0.0058 5 1 4.3711 1.2421 -0.0111 6 7 3.5872 -0.7284 -0.0032 7 6 2.3363 -1.1384 0.0046 8 6 1.8805 -2.5508 0.0104 9 7 0.6405 -2.9663 0.0177 10 8 0.6072 -4.1787 0.0213 11 6 1.8500 -4.6708 0.0172 12 6 2.2360 -6.1275 0.0203 13 6 2.3705 -6.6085 1.4420 14 1 2.1946 -5.9275 2.2615 15 6 2.7183 -7.9183 1.6967 16 7 2.8410 -8.3367 2.9375 17 14 3.0232 -9.0962 0.2793 18 1 4.4575 -9.0501 -0.1026 19 1 2.6661 -10.4758 0.6966 20 1 2.1885 -8.6988 -0.8829 21 7 2.6694 -3.6489 0.0163 22 1 -0.3634 0.0037 1.0277 23 1 -0.3634 0.8881 -0.5170 24 1 -0.3633 -0.8918 -0.5106 25 1 1.9700 2.1192 -0.0004 26 1 3.1872 -6.2524 -0.4971 27 1 1.4666 -6.7083 -0.4885 28 1 3.0852 -9.2582 3.1166 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:59 Heat of formation + Delta-G solvation = 112.850372 kcal Electronic energy + Delta-G solvation = -15469.074197 eV Core-core repulsion = 12717.140591 eV Total energy + Delta-G solvation = -2751.933607 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.50592 -42.30143 -37.00136 -35.80925 -34.32146 -33.26088 -32.28910 -30.86521 -27.46950 -26.18227 -25.69884 -23.47694 -22.10141 -20.63155 -19.51079 -18.80541 -18.62084 -18.32065 -16.57280 -16.06963 -16.01332 -15.51740 -14.64120 -14.49618 -14.12235 -14.05994 -13.68424 -13.45968 -13.19674 -12.94635 -12.83163 -12.47303 -12.15883 -12.04830 -11.74139 -11.72401 -11.20538 -10.82391 -10.33734 -9.55205 -8.33921 -6.46066 -0.14518 0.59868 1.11985 1.45811 1.47461 1.58032 1.59380 1.89614 1.97857 2.36389 2.64889 2.91038 3.04502 3.83196 3.95471 4.15571 4.40338 4.59258 4.62000 4.80125 4.82746 4.89334 4.99346 5.08243 5.14522 5.32222 5.49496 6.08936 6.26759 6.46182 6.56330 7.11037 7.16860 8.82502 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.047437 B = 0.005553 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.114198 B = 5041.357166 C = 5258.962817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.231 4.231 3 C 0.092 3.908 4 N -0.446 5.446 5 H 0.462 0.538 6 N -0.290 5.290 7 C 0.117 3.883 8 C 0.230 3.770 9 N -0.375 5.375 10 O 0.069 5.931 11 C 0.236 3.764 12 C 0.075 3.925 13 C -0.541 4.541 14 H 0.024 0.976 15 C 0.019 3.981 16 N -0.941 5.941 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.226 1.226 21 N -0.507 5.507 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.244 0.756 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 17.826 -9.684 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.244 4.244 3 C -0.056 4.056 4 N -0.158 5.158 5 H 0.311 0.689 6 N -0.119 5.119 7 C -0.047 4.047 8 C -0.042 4.042 9 N -0.087 5.087 10 O 0.013 5.987 11 C 0.017 3.983 12 C 0.036 3.964 13 C -0.580 4.580 14 H 0.042 0.958 15 C -0.180 4.180 16 N -0.579 5.579 17 Si 0.775 3.225 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.148 1.148 21 N -0.241 5.241 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.069 0.931 25 H 0.260 0.740 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.744 18.054 -9.573 20.509 hybrid contribution -0.013 -0.501 0.309 0.589 sum -1.757 17.552 -9.264 19.925 Atomic orbital electron populations 1.20160 0.87508 1.03292 1.02239 1.20490 0.98777 0.89777 1.15334 1.23122 0.82597 1.01364 0.98515 1.46313 1.09140 1.03660 1.56736 0.68893 1.77641 1.18788 0.91544 1.23914 1.18854 0.92418 0.88034 1.05374 1.22933 0.85496 0.93752 1.02034 1.74754 1.20126 0.91603 1.22217 1.85249 1.32696 1.14721 1.66062 1.29382 0.78454 1.00023 0.90428 1.18522 1.00374 0.79074 0.98400 1.20756 1.50288 0.96754 0.90201 0.95779 1.25932 0.93191 0.99643 0.99193 1.70031 1.47939 1.18199 1.21773 0.85603 0.80132 0.77297 0.79425 1.18940 1.20517 1.14821 1.72143 1.31899 0.97433 1.22584 0.91950 0.88251 0.93126 0.74024 0.90313 0.89348 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 9.95 71.23 0.71 -0.94 15 2 C -0.23 -6.00 6.12 -19.96 -0.12 -6.12 15 3 C 0.09 1.47 11.88 83.47 0.99 2.47 15 4 N -0.45 -8.84 7.35 -57.68 -0.42 -9.26 15 5 H 0.46 5.02 8.96 -213.34 -1.91 3.11 15 6 N -0.29 -9.88 12.74 -48.15 -0.61 -10.49 15 7 C 0.12 4.26 7.18 42.52 0.31 4.56 15 8 C 0.23 9.88 8.06 137.29 1.11 10.99 15 9 N -0.37 -15.59 10.42 -59.11 -0.62 -16.20 15 10 O 0.07 3.00 11.29 74.58 0.84 3.84 15 11 C 0.24 10.83 7.69 88.35 0.68 11.51 15 12 C 0.08 3.42 4.67 29.10 0.14 3.56 15 13 C -0.54 -30.77 9.65 25.60 0.25 -30.52 15 14 H 0.02 1.57 7.98 -2.91 -0.02 1.55 15 15 C 0.02 1.09 5.47 84.66 0.46 1.55 15 16 N -0.94 -57.48 13.96 21.45 0.30 -57.18 15 17 Si 0.95 40.38 27.47 68.60 1.88 42.26 15 18 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 20 H -0.23 -8.24 6.54 99.48 0.65 -7.59 15 21 N -0.51 -24.07 11.58 -302.47 -3.50 -27.57 15 22 H 0.06 1.37 8.14 -2.39 -0.02 1.36 15 23 H 0.10 1.39 8.14 -2.39 -0.02 1.38 15 24 H 0.05 1.38 6.69 -2.39 -0.02 1.36 15 25 H 0.24 0.81 8.06 -2.91 -0.02 0.79 15 26 H 0.08 3.37 7.57 -2.39 -0.02 3.35 15 27 H 0.09 3.51 7.20 -2.39 -0.02 3.49 15 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 Total: -1.00 -76.92 257.28 1.63 -75.28 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -0.76 Total: 2.27 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.52 Total: -2.95 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -4.86 Total: -120.71 kcal Atomic # 8 Polarization: 3.00 SS G_CDS: 0.84 Total: 3.84 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.88 Total: 42.26 kcal Total: -76.92 1.63 -75.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.135 kcal (2) G-P(sol) polarization free energy of solvation -76.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds