Wall clock time and date at job start Mon Mar 30 2020 03:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47547 * 2 1 4 4 N 1.46900 * 109.47051 * 119.99742 * 2 1 3 5 5 C 1.50702 * 109.47128 * 239.99708 * 2 1 3 6 6 O 1.21284 * 120.00006 * 260.00268 * 5 2 1 7 7 N 1.34775 * 119.99965 * 80.00003 * 5 2 1 8 8 C 1.39242 * 119.99732 * 175.70988 * 7 5 2 9 9 C 1.39478 * 119.83289 * 215.01339 * 8 7 5 10 10 C 1.36371 * 120.17227 * 179.72179 * 9 8 7 11 11 C 1.40874 * 119.82471 * 0.57323 * 10 9 8 12 12 C 1.41145 * 120.16350 * 179.67630 * 11 10 9 13 13 H 1.08005 * 120.00240 * 214.80315 * 12 11 10 14 14 C 1.39908 * 120.00112 * 34.80768 * 12 11 10 15 15 N 1.30873 * 119.99632 * 355.55826 * 14 12 11 16 16 Si 1.86796 * 120.00207 * 175.55300 * 14 12 11 17 17 H 1.48501 * 109.47092 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47257 * 119.99880 * 16 14 12 19 19 H 1.48496 * 109.47357 * 240.00035 * 16 14 12 20 20 C 1.40867 * 119.66948 * 359.70233 * 11 10 9 21 21 C 1.36370 * 119.83331 * 359.97438 * 20 11 10 22 22 H 1.09001 * 109.46798 * 300.00243 * 1 2 3 23 23 H 1.09002 * 109.47337 * 59.99829 * 1 2 3 24 24 H 1.08999 * 109.47547 * 180.02562 * 1 2 3 25 25 H 1.00896 * 111.00217 * 296.04449 * 4 2 1 26 26 H 1.00905 * 111.00203 * 60.00400 * 4 2 1 27 27 H 0.96992 * 120.00250 * 355.71091 * 7 5 2 28 28 H 1.08005 * 119.91604 * 0.02562 * 9 8 7 29 29 H 1.07999 * 120.09165 * 180.25465 * 10 9 8 30 30 H 0.97002 * 119.99393 * 180.02562 * 15 14 12 31 31 H 1.08007 * 120.08585 * 179.97438 * 20 11 10 32 32 H 1.08004 * 119.91842 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0323 -0.7105 -1.2304 6 8 2.4063 -1.8618 -1.1557 7 7 2.0658 -0.0665 -2.4139 8 6 2.6125 -0.6919 -3.5315 9 6 3.3123 0.0605 -4.4747 10 6 3.8554 -0.5458 -5.5689 11 6 3.6977 -1.9337 -5.7513 12 6 4.2510 -2.5674 -6.8847 13 1 3.7357 -3.3978 -7.3445 14 6 5.4669 -2.1199 -7.4125 15 7 6.0480 -1.0604 -6.9100 16 14 6.2612 -3.0347 -8.8343 17 1 5.4099 -4.1898 -9.2169 18 1 6.4028 -2.1190 -9.9948 19 1 7.6018 -3.5223 -8.4221 20 6 2.9846 -2.6859 -4.7973 21 6 2.4529 -2.0667 -3.7048 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.7502 -0.1989 2.0372 26 1 1.6961 -1.6479 1.2228 27 1 1.7092 0.8325 -2.4872 28 1 3.4286 1.1252 -4.3356 29 1 4.4005 0.0374 -6.2963 30 1 6.8909 -0.7499 -7.2762 31 1 2.8593 -3.7503 -4.9307 32 1 1.9056 -2.6419 -2.9727 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035222944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:30 Heat of formation + Delta-G solvation = -41.480472 kcal Electronic energy + Delta-G solvation = -15825.074855 eV Core-core repulsion = 13169.989304 eV Total energy + Delta-G solvation = -2655.085551 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.28928 -39.18477 -36.36270 -35.92638 -34.67170 -31.51029 -30.91190 -29.61608 -27.09705 -24.90591 -23.26165 -22.39610 -20.88872 -19.28511 -18.64306 -18.14213 -17.05187 -16.37415 -15.98497 -15.67373 -15.60158 -14.96284 -14.55065 -14.33039 -14.06069 -13.81116 -13.60159 -13.28329 -13.21391 -12.85491 -12.77348 -12.54107 -12.41056 -11.74660 -11.39233 -11.21495 -10.77322 -10.53734 -9.69205 -9.47203 -8.73240 -8.50839 -6.33788 0.78998 1.12583 1.39614 1.44359 1.54848 1.79653 2.23797 2.31800 2.80337 3.65009 3.66125 3.82135 4.08376 4.17414 4.38881 4.51369 4.74526 4.79081 4.92976 5.11623 5.14458 5.16380 5.34315 5.43543 5.68740 5.89583 6.01762 6.08314 6.14558 6.38407 6.58847 6.67045 6.75261 6.96257 6.99600 7.41892 8.42267 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.062998 B = 0.005141 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.354495 B = 5445.609058 C = 5552.367487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.127 0.873 4 N -0.843 5.843 5 C 0.499 3.501 6 O -0.571 6.571 7 N -0.644 5.644 8 C 0.021 3.979 9 C -0.120 4.120 10 C -0.159 4.159 11 C 0.066 3.934 12 C -0.499 4.499 13 H 0.072 0.928 14 C 0.028 3.972 15 N -0.842 5.842 16 Si 0.989 3.011 17 H -0.260 1.260 18 H -0.262 1.262 19 H -0.269 1.269 20 C -0.222 4.222 21 C -0.099 4.099 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.364 0.636 26 H 0.347 0.653 27 H 0.418 0.582 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.285 0.715 31 H 0.095 0.905 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 6.430 9.289 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.031 4.031 3 H 0.144 0.856 4 N -0.377 5.377 5 C 0.287 3.713 6 O -0.449 6.449 7 N -0.290 5.290 8 C -0.073 4.073 9 C -0.140 4.140 10 C -0.179 4.179 11 C 0.064 3.936 12 C -0.530 4.530 13 H 0.090 0.910 14 C -0.184 4.184 15 N -0.470 5.470 16 Si 0.810 3.190 17 H -0.184 1.184 18 H -0.186 1.186 19 H -0.194 1.194 20 C -0.242 4.242 21 C -0.119 4.119 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.180 0.820 26 H 0.161 0.839 27 H 0.255 0.745 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.151 5.928 9.081 12.990 hybrid contribution -0.559 -0.316 -0.464 0.792 sum -7.710 5.612 8.616 12.852 Atomic orbital electron populations 1.22513 0.93190 1.02787 1.04939 1.21326 0.95091 0.98974 0.87681 0.85577 1.58443 1.68239 1.07274 1.03759 1.21523 0.77569 0.87066 0.85158 1.90651 1.48785 1.19554 1.85886 1.42927 1.59629 1.19410 1.07010 1.17363 1.06113 0.92382 0.91451 1.20582 0.98587 0.99259 0.95546 1.21189 1.02668 0.94775 0.99263 1.18043 0.90576 0.92359 0.92624 1.19756 1.05981 1.15526 1.11686 0.90962 1.26743 0.97137 0.95117 0.99393 1.69833 1.16696 1.21525 1.38981 0.85045 0.78045 0.78821 0.77051 1.18417 1.18623 1.19443 1.20937 1.08360 0.98335 0.96545 1.20505 1.00501 0.94145 0.96706 0.88590 0.90565 0.93300 0.82018 0.83887 0.74498 0.85615 0.86261 0.90461 0.88672 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.46 71.98 0.68 -1.99 16 2 C 0.08 1.77 3.76 44.17 0.17 1.94 16 3 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 4 N -0.84 -18.11 8.98 -171.81 -1.54 -19.65 16 5 C 0.50 16.69 6.91 87.66 0.61 17.29 16 6 O -0.57 -24.97 13.67 -3.04 -0.04 -25.01 16 7 N -0.64 -21.38 5.30 -303.11 -1.61 -22.99 16 8 C 0.02 0.91 6.31 38.56 0.24 1.16 16 9 C -0.12 -5.45 9.90 22.13 0.22 -5.23 16 10 C -0.16 -8.44 8.62 22.48 0.19 -8.25 16 11 C 0.07 3.74 5.55 -21.28 -0.12 3.62 16 12 C -0.50 -27.96 9.02 23.39 0.21 -27.75 16 13 H 0.07 3.93 7.85 -2.91 -0.02 3.90 16 14 C 0.03 1.45 5.42 85.24 0.46 1.91 16 15 N -0.84 -45.17 10.60 21.82 0.23 -44.93 16 16 Si 0.99 39.73 29.56 68.60 2.03 41.76 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 20 C -0.22 -11.88 9.74 22.48 0.22 -11.66 16 21 C -0.10 -4.89 8.61 22.13 0.19 -4.70 16 22 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.36 5.06 9.07 -89.70 -0.81 4.24 16 26 H 0.35 8.11 8.58 -89.69 -0.77 7.35 16 27 H 0.42 9.98 8.82 -92.71 -0.82 9.17 16 28 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.12 6.57 6.13 -2.91 -0.02 6.56 16 30 H 0.28 13.80 8.30 -92.71 -0.77 13.04 16 31 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 32 H 0.11 5.22 6.22 -2.91 -0.02 5.20 16 Total: -1.00 -70.02 276.38 0.91 -69.11 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -1.23 Total: 35.36 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 3.07 Total: -33.65 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.92 Total: -87.58 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.01 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -70.02 0.91 -69.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035222944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.634 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds