Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37629 * 119.96599 * 2 1 4 4 C 1.39775 * 119.92831 * 179.77208 * 3 2 1 5 5 C 1.47527 * 120.06709 * 180.25327 * 4 3 2 6 6 O 1.21601 * 119.99949 * 0.23122 * 5 4 3 7 7 N 1.34776 * 119.99843 * 180.22536 * 5 4 3 8 8 C 1.46504 * 119.99698 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46961 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99553 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99883 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99715 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00040 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47494 * 89.99974 * 13 11 9 15 15 H 1.48502 * 109.46878 * 209.99994 * 13 11 9 16 16 H 1.48496 * 109.47355 * 329.99867 * 13 11 9 17 17 C 1.39809 * 119.86238 * 0.48516 * 4 3 2 18 18 C 1.37588 * 119.93452 * 359.76789 * 17 4 3 19 19 C 1.39197 * 119.96171 * 180.27907 * 2 1 3 20 20 N 1.39045 * 119.93432 * 359.97438 * 19 2 1 21 21 H 1.09002 * 109.47152 * 269.72187 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72287 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72268 * 1 2 3 24 24 H 1.08000 * 120.03697 * 0.02562 * 3 2 1 25 25 H 0.96998 * 120.00276 * 0.02562 * 7 5 4 26 26 H 1.09000 * 109.47298 * 300.00399 * 8 7 5 27 27 H 1.09001 * 109.46888 * 60.00198 * 8 7 5 28 28 H 0.97002 * 119.99587 * 180.02562 * 12 11 9 29 29 H 1.08002 * 120.03195 * 179.75427 * 17 4 3 30 30 H 1.07995 * 119.96470 * 179.97438 * 18 17 4 31 31 H 0.96994 * 119.99849 * 0.02562 * 20 19 2 32 32 H 0.97003 * 119.99386 * 180.02562 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1923 0.0000 4 6 3.5922 1.1914 0.0048 5 6 4.3322 2.4677 0.0105 6 8 3.7261 3.5218 0.0152 7 7 5.6799 2.4652 0.0105 8 6 6.4147 3.7326 0.0167 9 6 7.8959 3.4546 0.0148 10 1 8.2540 2.4356 0.0091 11 6 8.7937 4.5009 0.0203 12 7 10.0862 4.2582 0.0182 13 14 8.1742 6.2631 0.0309 14 1 8.0109 6.7220 1.4338 15 1 9.1536 7.1362 -0.6646 16 1 6.8658 6.3321 -0.6679 17 6 4.2876 -0.0215 -0.0006 18 6 3.5947 -1.2101 -0.0059 19 6 2.2022 -1.2059 -0.0059 20 7 1.5048 -2.4088 -0.0112 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8925 -0.5095 24 1 1.6545 2.1276 0.0004 25 1 6.1634 1.6243 0.0065 26 1 6.1524 4.3090 -0.8704 27 1 6.1524 4.3003 0.9095 28 1 10.7179 4.9943 0.0224 29 1 5.3676 -0.0254 -0.0009 30 1 4.1313 -2.1473 -0.0105 31 1 0.5349 -2.4070 -0.0112 32 1 1.9884 -3.2497 -0.0149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036667417.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -21.623902 kcal Electronic energy + Delta-G solvation = -15523.019277 eV Core-core repulsion = 12868.794772 eV Total energy + Delta-G solvation = -2654.224505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90580 -38.30266 -34.55740 -34.28636 -32.70591 -32.15908 -29.37722 -27.91273 -26.57019 -23.32569 -21.97448 -21.51904 -19.58414 -17.61036 -17.27603 -16.96878 -16.09721 -15.12224 -14.51217 -14.44842 -14.06983 -13.89994 -13.85928 -13.24763 -13.04401 -12.53634 -12.44870 -12.27387 -12.07390 -11.80869 -10.99308 -10.91657 -10.76298 -10.54038 -9.92948 -9.44871 -9.19367 -8.76790 -8.73639 -8.11336 -7.52458 -6.17766 -4.19581 1.26202 1.47077 3.30076 3.34944 3.36902 3.46256 3.67282 4.10840 4.22953 4.37623 4.79079 4.82543 5.16658 5.17941 5.36870 5.39307 5.48971 5.56213 5.62094 5.91975 6.10727 6.26427 6.41633 6.61259 6.79727 6.90801 7.13425 7.28911 7.32750 7.44878 7.51918 8.20107 8.58716 8.79790 9.02633 9.42915 10.94252 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.050967 B = 0.005063 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.239866 B = 5529.231992 C = 6058.024389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.180 4.180 3 C -0.014 4.014 4 C -0.181 4.181 5 C 0.547 3.453 6 O -0.563 6.563 7 N -0.702 5.702 8 C 0.220 3.780 9 C -0.543 4.543 10 H 0.079 0.921 11 C 0.078 3.922 12 N -0.894 5.894 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.040 4.040 18 C -0.204 4.204 19 C 0.233 3.767 20 N -0.873 5.873 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.133 0.867 25 H 0.395 0.605 26 H 0.026 0.974 27 H 0.021 0.979 28 H 0.267 0.733 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.397 0.603 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 -13.411 -0.080 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.185 4.185 3 C -0.034 4.034 4 C -0.186 4.186 5 C 0.334 3.666 6 O -0.444 6.444 7 N -0.350 5.350 8 C 0.098 3.902 9 C -0.580 4.580 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.531 5.531 13 Si 0.703 3.297 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.184 1.184 17 C -0.059 4.059 18 C -0.227 4.227 19 C 0.127 3.873 20 N -0.412 5.412 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.151 0.849 25 H 0.230 0.770 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.227 0.773 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -16.975 -12.515 -0.081 21.089 hybrid contribution 0.059 0.115 0.024 0.132 sum -16.915 -12.400 -0.057 20.973 Atomic orbital electron populations 1.20566 0.91225 1.02272 1.01831 1.19257 0.95803 0.91508 1.11940 1.20897 0.92728 0.97382 0.92375 1.19884 0.94141 0.93303 1.11240 1.18201 0.82744 0.88452 0.77169 1.90703 1.68703 1.32895 1.52126 1.46105 1.05196 1.11391 1.72356 1.19504 0.91823 0.82060 0.96845 1.21103 0.88056 0.95718 1.53169 0.90271 1.24788 0.94624 0.99325 0.93868 1.69884 1.01071 1.32526 1.49610 0.86812 0.79448 0.84366 0.79060 1.19844 1.20934 1.18443 1.21125 0.99812 0.91196 0.93813 1.20461 0.91722 0.98566 1.11937 1.17724 0.91264 0.86088 0.92220 1.42465 1.09131 1.05243 1.84404 0.91709 0.92491 0.91290 0.84891 0.77048 0.95617 0.96072 0.92303 0.85334 0.85803 0.77306 0.77420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.56 36.01 0.34 -0.55 16 2 C -0.18 -2.18 5.89 -104.49 -0.62 -2.79 16 3 C -0.01 -0.21 9.23 -39.23 -0.36 -0.57 16 4 C -0.18 -3.03 5.88 -104.95 -0.62 -3.64 16 5 C 0.55 11.51 7.76 -12.47 -0.10 11.41 16 6 O -0.56 -13.70 16.34 5.28 0.09 -13.61 16 7 N -0.70 -15.19 5.50 -62.52 -0.34 -15.54 16 8 C 0.22 5.61 4.50 -5.19 -0.02 5.59 16 9 C -0.54 -15.19 9.83 -34.44 -0.34 -15.53 16 10 H 0.08 2.29 7.84 -52.48 -0.41 1.88 16 11 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 12 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 13 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 17 C -0.04 -0.56 9.53 -39.23 -0.37 -0.93 16 18 C -0.20 -2.39 9.87 -39.44 -0.39 -2.78 16 19 C 0.23 2.57 6.73 -83.86 -0.56 2.00 16 20 N -0.87 -6.33 8.96 32.41 0.29 -6.04 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 23 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 24 H 0.13 2.02 7.64 -52.49 -0.40 1.62 16 25 H 0.39 7.52 6.34 -40.82 -0.26 7.26 16 26 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.13 1.66 6.39 -52.49 -0.34 1.32 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.40 2.23 6.79 -40.82 -0.28 1.95 16 32 H 0.40 2.12 8.83 -40.82 -0.36 1.76 16 LS Contribution 274.95 15.07 4.14 4.14 Total: -1.00 -33.56 274.95 -6.44 -40.00 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.58 Total: 5.63 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -3.13 Total: -5.67 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.72 Total: -47.62 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.56 -6.44 -40.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667417.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.372 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds