Wall clock time and date at job start Mon Mar 30 2020 03:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47807 * 2 1 4 4 C 1.50706 * 109.47067 * 239.99861 * 2 1 3 5 5 H 1.08004 * 119.99586 * 240.00252 * 4 2 1 6 6 C 1.37873 * 119.99877 * 60.00438 * 4 2 1 7 7 N 1.31517 * 120.00102 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00031 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47102 * 89.99450 * 8 6 4 10 10 H 1.48500 * 109.47088 * 209.99543 * 8 6 4 11 11 H 1.48502 * 109.46857 * 329.99489 * 8 6 4 12 12 N 1.46499 * 109.47364 * 120.00030 * 2 1 3 13 13 C 1.39048 * 120.00311 * 275.00420 * 12 2 1 14 14 C 1.39215 * 119.93714 * 179.97438 * 13 12 2 15 15 C 1.37606 * 120.07334 * 179.97438 * 14 13 12 16 16 C 1.39797 * 119.92754 * 359.97438 * 15 14 13 17 17 C 1.47520 * 120.06606 * 179.97438 * 16 15 14 18 18 N 1.34784 * 119.99967 * 180.02562 * 17 16 15 19 19 O 1.21597 * 120.00420 * 0.02562 * 17 16 15 20 20 C 1.39796 * 119.86504 * 0.27547 * 16 15 14 21 21 C 1.37609 * 119.92604 * 359.46104 * 20 16 15 22 22 H 1.08997 * 109.46725 * 59.99797 * 1 2 3 23 23 H 1.08998 * 109.46980 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46897 * 300.00082 * 1 2 3 25 25 H 0.96995 * 119.99985 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00379 * 94.99090 * 12 2 1 27 27 H 1.08004 * 119.96280 * 359.97438 * 14 13 12 28 28 H 1.08001 * 120.03947 * 179.97438 * 15 14 13 29 29 H 0.97000 * 119.99339 * 0.02562 * 18 17 16 30 30 H 0.96995 * 120.00015 * 179.72812 * 18 17 16 31 31 H 1.07998 * 120.03336 * 179.73015 * 20 16 15 32 32 H 1.08004 * 119.96482 * 180.25301 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.1512 0.0030 2.3940 14 6 2.6149 -0.6548 3.5299 15 6 2.7479 0.0290 4.7166 16 6 2.4172 1.3858 4.7806 17 6 2.5580 2.1217 6.0514 18 7 2.2384 3.4297 6.1117 19 8 2.9625 1.5483 7.0445 20 6 1.9468 2.0423 3.6395 21 6 1.8212 1.3542 2.4544 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7083 1.1609 -3.4844 26 1 2.2490 -1.6318 1.1527 27 1 2.8706 -1.7029 3.4797 28 1 3.1073 -0.4819 5.5977 29 1 1.9154 3.8869 5.3196 30 1 2.3272 3.9126 6.9482 31 1 1.6865 3.0893 3.6870 32 1 1.4618 1.8618 1.5714 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:13 Heat of formation + Delta-G solvation = -42.744504 kcal Electronic energy + Delta-G solvation = -15687.686854 eV Core-core repulsion = 13032.546490 eV Total energy + Delta-G solvation = -2655.140363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96070 -39.57966 -37.13917 -34.89736 -34.40765 -31.95376 -31.40985 -29.12052 -27.28983 -24.42651 -23.83553 -22.18259 -21.10871 -19.30772 -18.69774 -17.72024 -17.46652 -16.92697 -15.97604 -15.81551 -15.65749 -15.04317 -14.80915 -14.33958 -14.24668 -14.04558 -13.50136 -13.45596 -12.90809 -12.85027 -12.58725 -12.31063 -12.14336 -11.70746 -11.13438 -11.04301 -10.92333 -10.61189 -10.49085 -9.88447 -8.25248 -8.14417 -6.34159 0.22665 0.59929 1.42805 1.44831 1.53717 2.04736 2.36789 2.74636 2.85467 3.09540 3.13126 3.96943 4.09069 4.16030 4.50061 4.66161 4.70150 4.79882 4.98244 5.09742 5.14507 5.32777 5.46049 5.51194 5.54056 5.63171 5.82923 5.97066 6.03143 6.10431 6.49445 6.54514 6.79033 7.11157 7.37724 7.42817 8.85715 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.054746 B = 0.004987 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.333647 B = 5613.171593 C = 5861.130075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.271 3.729 3 H 0.020 0.980 4 C -0.550 4.550 5 H 0.061 0.939 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.716 5.716 13 C 0.247 3.753 14 C -0.225 4.225 15 C -0.013 4.013 16 C -0.240 4.240 17 C 0.572 3.428 18 N -0.835 5.835 19 O -0.601 6.601 20 C -0.019 4.019 21 C -0.230 4.230 22 H 0.068 0.932 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.266 0.734 26 H 0.398 0.602 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.414 0.586 30 H 0.410 0.590 31 H 0.154 0.846 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 3.561 9.668 10.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.038 0.962 4 C -0.588 4.588 5 H 0.079 0.921 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.337 5.337 13 C 0.135 3.865 14 C -0.248 4.248 15 C -0.033 4.033 16 C -0.246 4.246 17 C 0.361 3.639 18 N -0.399 5.399 19 O -0.484 6.484 20 C -0.038 4.038 21 C -0.253 4.253 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.232 0.768 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.246 0.754 30 H 0.242 0.758 31 H 0.171 0.829 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.698 3.295 9.804 10.367 hybrid contribution 0.113 -0.343 -1.140 1.195 sum 0.811 2.952 8.665 9.190 Atomic orbital electron populations 1.22006 0.98343 0.99319 1.00239 1.18489 0.90915 0.92426 0.81388 0.96230 1.21524 1.32428 1.13482 0.91359 0.92097 1.25599 0.94900 0.95580 1.01726 1.69973 1.36744 1.23565 1.24613 0.85490 0.78753 0.78246 0.78735 1.20077 1.20858 1.19499 1.45367 1.68269 1.12552 1.07486 1.18503 0.89440 0.92053 0.86485 1.20642 1.11175 1.01165 0.91807 1.20977 0.92536 0.92895 0.96857 1.19513 1.15357 0.95736 0.94014 1.18264 0.75434 0.82675 0.87524 1.43553 1.69073 1.10013 1.17285 1.90742 1.49594 1.69610 1.38486 1.21160 0.92626 0.99846 0.90163 1.20788 1.11388 0.93623 0.99534 0.91321 0.95338 0.95279 0.92461 0.76778 0.84538 0.85103 0.75396 0.75778 0.82851 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 9.19 71.98 0.66 -5.69 16 2 C 0.27 12.59 2.25 44.25 0.10 12.69 16 3 H 0.02 1.01 6.46 -2.39 -0.02 1.00 16 4 C -0.55 -27.85 8.73 25.60 0.22 -27.62 16 5 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -48.54 11.32 21.45 0.24 -48.30 16 8 Si 0.96 40.77 29.54 68.60 2.03 42.80 16 9 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 N -0.72 -27.95 5.22 -322.52 -1.68 -29.64 16 13 C 0.25 8.74 6.63 38.47 0.26 9.00 16 14 C -0.22 -7.00 9.87 22.36 0.22 -6.78 16 15 C -0.01 -0.39 9.58 22.50 0.22 -0.17 16 16 C -0.24 -6.99 5.88 -20.08 -0.12 -7.10 16 17 C 0.57 15.98 8.03 86.69 0.70 16.67 16 18 N -0.84 -14.75 8.82 -175.81 -1.55 -16.31 16 19 O -0.60 -21.35 17.17 -4.02 -0.07 -21.42 16 20 C -0.02 -0.50 9.53 22.50 0.21 -0.29 16 21 C -0.23 -7.78 8.80 22.36 0.20 -7.58 16 22 H 0.07 3.44 6.07 -2.39 -0.01 3.42 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.03 1.18 7.68 -2.39 -0.02 1.17 16 25 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 26 H 0.40 14.42 8.54 -92.71 -0.79 13.62 16 27 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.13 3.82 7.64 -2.91 -0.02 3.80 16 29 H 0.41 5.03 6.85 -92.71 -0.63 4.40 16 30 H 0.41 5.78 8.93 -92.71 -0.83 4.96 16 31 H 0.15 2.85 6.39 -2.91 -0.02 2.83 16 32 H 0.12 4.33 6.07 -2.91 -0.02 4.32 16 Total: -1.00 -61.39 274.05 1.00 -60.38 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -1.08 Total: 27.76 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 3.11 Total: -15.28 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -2.99 Total: -94.24 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -61.39 1.00 -60.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.636 kcal (2) G-P(sol) polarization free energy of solvation -61.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds