Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.46882 * 2 1 4 4 C 1.50700 * 109.47180 * 240.00571 * 2 1 3 5 5 O 1.21298 * 119.99483 * 264.52644 * 4 2 1 6 6 N 1.34776 * 120.00525 * 84.52499 * 4 2 1 7 7 C 1.37095 * 120.00156 * 180.02562 * 6 4 2 8 8 H 1.08002 * 120.00162 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99826 * 179.97438 * 7 6 4 10 10 N 1.31405 * 120.00375 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99895 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46731 * 59.99859 * 11 9 7 13 13 H 1.48496 * 109.47281 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47157 * 300.00420 * 11 9 7 15 15 C 1.50699 * 109.47492 * 119.99966 * 2 1 3 16 16 C 1.38232 * 119.99775 * 48.40380 * 15 2 1 17 17 C 1.38238 * 119.99845 * 179.76391 * 16 15 2 18 18 C 1.38234 * 120.00049 * 0.51123 * 17 16 15 19 19 C 1.38244 * 119.99762 * 359.74294 * 18 17 16 20 20 C 1.38233 * 120.00134 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46986 * 299.99638 * 1 2 3 23 23 H 1.08995 * 109.47650 * 60.00040 * 1 2 3 24 24 H 1.00907 * 110.99977 * 180.02562 * 3 2 1 25 25 H 1.00898 * 111.00168 * 303.95318 * 3 2 1 26 26 H 0.97002 * 119.99632 * 359.72464 * 6 4 2 27 27 H 0.96993 * 120.00614 * 179.97438 * 10 9 7 28 28 H 1.08005 * 120.00315 * 359.97438 * 16 15 2 29 29 H 1.07997 * 119.99870 * 180.22865 * 17 16 15 30 30 H 1.07994 * 120.00398 * 179.72193 * 18 17 16 31 31 H 1.07997 * 119.99567 * 179.97438 * 19 18 17 32 32 H 1.07991 * 119.99818 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3289 -1.8851 -1.1740 6 7 2.1520 -0.0403 -2.3938 7 6 2.6085 -0.6867 -3.5133 8 1 2.8726 -1.7327 -3.4630 9 6 2.7314 0.0040 -4.7128 10 7 2.4095 1.2766 -4.7742 11 14 3.3541 -0.8765 -6.2380 12 1 2.4444 -2.0039 -6.5647 13 1 3.3932 0.0749 -7.3776 14 1 4.7201 -1.4004 -5.9841 15 6 2.0324 -0.7104 1.2304 16 6 1.5135 -1.9440 1.5765 17 6 1.9778 -2.5979 2.7025 18 6 2.9535 -2.0133 3.4882 19 6 3.4686 -0.7772 3.1449 20 6 3.0085 -0.1260 2.0157 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.0283 1.4120 -0.0004 25 1 1.6441 1.9013 -0.7813 26 1 1.9110 0.8982 -2.4400 27 1 2.4956 1.7588 -5.6113 28 1 0.7477 -2.3985 0.9654 29 1 1.5751 -3.5633 2.9709 30 1 3.3131 -2.5221 4.3703 31 1 4.2306 -0.3204 3.7590 32 1 3.4106 0.8398 1.7479 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052882765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = -11.133272 kcal Electronic energy + Delta-G solvation = -16357.620493 eV Core-core repulsion = 13703.850896 eV Total energy + Delta-G solvation = -2653.769597 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.76513 -37.88606 -34.90765 -34.08083 -31.34063 -30.72207 -29.79567 -28.35398 -25.27672 -23.51453 -22.01793 -21.17241 -18.74173 -18.11562 -16.85067 -16.22976 -15.21924 -14.87287 -14.68909 -14.27343 -13.95283 -13.57676 -13.20297 -13.10571 -12.69549 -12.23519 -11.77135 -11.70500 -11.61208 -11.51152 -11.11210 -10.62516 -10.50692 -10.47983 -10.26570 -9.58819 -9.49785 -8.50715 -8.39871 -8.06845 -7.83206 -6.50320 -3.92031 1.74175 1.81683 3.14177 3.21017 3.25312 3.76623 4.04960 4.20658 4.74171 4.90008 5.07120 5.19370 5.27064 5.31745 5.47557 5.63457 5.85111 5.92370 5.96840 6.10501 6.23824 6.38861 6.41782 6.44227 6.79430 6.85827 7.02064 7.33268 7.38652 7.46884 7.67475 7.96002 8.49465 9.08280 9.41459 9.92233 10.66623 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.006629 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.026978 B = 4222.997211 C = 4430.954765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.145 3.855 3 N -0.833 5.833 4 C 0.415 3.585 5 O -0.583 6.583 6 N -0.559 5.559 7 C -0.304 4.304 8 H 0.103 0.897 9 C 0.025 3.975 10 N -0.900 5.900 11 Si 0.932 3.068 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.273 1.273 15 C -0.043 4.043 16 C -0.084 4.084 17 C -0.128 4.128 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.104 4.104 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.344 0.656 25 H 0.346 0.654 26 H 0.389 0.611 27 H 0.274 0.726 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 0.017 10.925 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.049 3.951 3 N -0.366 5.366 4 C 0.198 3.802 5 O -0.466 6.466 6 N -0.195 5.195 7 C -0.433 4.433 8 H 0.120 0.880 9 C -0.177 4.177 10 N -0.541 5.541 11 Si 0.758 3.242 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.199 1.199 15 C -0.044 4.044 16 C -0.103 4.103 17 C -0.146 4.146 18 C -0.148 4.148 19 C -0.149 4.149 20 C -0.123 4.123 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.158 0.842 25 H 0.160 0.840 26 H 0.223 0.777 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.712 -0.570 11.465 11.607 hybrid contribution 0.667 -0.065 -1.884 1.999 sum -1.045 -0.635 9.582 9.660 Atomic orbital electron populations 1.21774 0.92058 1.02493 1.02529 1.19770 0.96136 0.87711 0.91466 1.59076 1.14307 1.11846 1.51354 1.20708 0.85659 0.88592 0.85210 1.90532 1.54713 1.16349 1.85040 1.41880 1.57217 1.12527 1.07884 1.19673 1.40361 0.96899 0.86391 0.87955 1.25271 0.97375 0.95681 0.99389 1.69579 1.48032 1.08207 1.28233 0.85901 0.79461 0.78757 0.80036 1.19836 1.20849 1.19870 1.19317 0.96211 0.94523 0.94374 1.20937 0.99706 0.94002 0.95608 1.21030 0.98169 0.99685 0.95714 1.21028 0.97890 0.95992 0.99843 1.21025 1.00473 0.95695 0.97668 1.20974 0.96580 0.99926 0.94777 0.91626 0.91408 0.91978 0.84208 0.83958 0.77669 0.91649 0.86143 0.86555 0.86795 0.86611 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.38 37.16 0.31 -1.83 16 2 C 0.15 2.68 1.00 -133.90 -0.13 2.55 16 3 N -0.83 -13.43 7.93 -1.14 -0.01 -13.44 16 4 C 0.41 9.79 6.61 -10.99 -0.07 9.71 16 5 O -0.58 -15.88 15.07 5.54 0.08 -15.80 16 6 N -0.56 -13.88 5.18 -10.96 -0.06 -13.94 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 10 N -0.90 -23.92 13.05 55.50 0.72 -23.20 16 11 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 C -0.04 -0.78 4.50 -104.62 -0.47 -1.25 16 16 C -0.08 -1.47 8.17 -39.58 -0.32 -1.80 16 17 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 18 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 19 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 20 C -0.10 -1.70 9.22 -39.58 -0.36 -2.07 16 21 H 0.06 1.07 6.84 -51.93 -0.36 0.71 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.34 5.52 7.55 -39.29 -0.30 5.23 16 25 H 0.35 5.47 7.59 -39.29 -0.30 5.17 16 26 H 0.39 9.14 6.40 -40.82 -0.26 8.88 16 27 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.12 2.12 6.91 -52.48 -0.36 1.76 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.87 6.28 -52.49 -0.33 1.55 16 LS Contribution 272.79 15.07 4.11 4.11 Total: -1.00 -30.46 272.79 -6.19 -36.64 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -3.53 Total: 19.26 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.49 Total: -9.49 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.66 Total: -50.58 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.08 Total: -15.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.46 -6.19 -36.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052882765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.508 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds