Wall clock time and date at job start Mon Mar 30 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.46882 * 2 1 4 4 C 1.50700 * 109.47180 * 240.00571 * 2 1 3 5 5 O 1.21298 * 119.99483 * 264.52644 * 4 2 1 6 6 N 1.34776 * 120.00525 * 84.52499 * 4 2 1 7 7 C 1.37095 * 120.00156 * 180.02562 * 6 4 2 8 8 H 1.08002 * 120.00162 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99826 * 179.97438 * 7 6 4 10 10 N 1.31405 * 120.00375 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99895 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46731 * 59.99859 * 11 9 7 13 13 H 1.48496 * 109.47281 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47157 * 300.00420 * 11 9 7 15 15 C 1.50699 * 109.47492 * 119.99966 * 2 1 3 16 16 C 1.38232 * 119.99775 * 48.40380 * 15 2 1 17 17 C 1.38238 * 119.99845 * 179.76391 * 16 15 2 18 18 C 1.38234 * 120.00049 * 0.51123 * 17 16 15 19 19 C 1.38244 * 119.99762 * 359.74294 * 18 17 16 20 20 C 1.38233 * 120.00134 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46986 * 299.99638 * 1 2 3 23 23 H 1.08995 * 109.47650 * 60.00040 * 1 2 3 24 24 H 1.00907 * 110.99977 * 180.02562 * 3 2 1 25 25 H 1.00898 * 111.00168 * 303.95318 * 3 2 1 26 26 H 0.97002 * 119.99632 * 359.72464 * 6 4 2 27 27 H 0.96993 * 120.00614 * 179.97438 * 10 9 7 28 28 H 1.08005 * 120.00315 * 359.97438 * 16 15 2 29 29 H 1.07997 * 119.99870 * 180.22865 * 17 16 15 30 30 H 1.07994 * 120.00398 * 179.72193 * 18 17 16 31 31 H 1.07997 * 119.99567 * 179.97438 * 19 18 17 32 32 H 1.07991 * 119.99818 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3289 -1.8851 -1.1740 6 7 2.1520 -0.0403 -2.3938 7 6 2.6085 -0.6867 -3.5133 8 1 2.8726 -1.7327 -3.4630 9 6 2.7314 0.0040 -4.7128 10 7 2.4095 1.2766 -4.7742 11 14 3.3541 -0.8765 -6.2380 12 1 2.4444 -2.0039 -6.5647 13 1 3.3932 0.0749 -7.3776 14 1 4.7201 -1.4004 -5.9841 15 6 2.0324 -0.7104 1.2304 16 6 1.5135 -1.9440 1.5765 17 6 1.9778 -2.5979 2.7025 18 6 2.9535 -2.0133 3.4882 19 6 3.4686 -0.7772 3.1449 20 6 3.0085 -0.1260 2.0157 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 3.0283 1.4120 -0.0004 25 1 1.6441 1.9013 -0.7813 26 1 1.9110 0.8982 -2.4400 27 1 2.4956 1.7588 -5.6113 28 1 0.7477 -2.3985 0.9654 29 1 1.5751 -3.5633 2.9709 30 1 3.3131 -2.5221 4.3703 31 1 4.2306 -0.3204 3.7590 32 1 3.4106 0.8398 1.7479 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052882765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:07 Heat of formation + Delta-G solvation = -32.441817 kcal Electronic energy + Delta-G solvation = -16358.544501 eV Core-core repulsion = 13703.850896 eV Total energy + Delta-G solvation = -2654.693605 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.28613 -39.41305 -36.41855 -36.08762 -33.27860 -31.97218 -31.07975 -29.66640 -27.25800 -24.96279 -23.22857 -22.68911 -20.45057 -19.99167 -18.15325 -17.94781 -16.80786 -16.45383 -16.16265 -15.67809 -15.60101 -15.24213 -14.85655 -14.44388 -14.06261 -13.64019 -13.44705 -13.10694 -13.05455 -12.93951 -12.84843 -12.50575 -12.17122 -11.82016 -11.72402 -11.54575 -11.16962 -10.10008 -9.72483 -9.68295 -9.42979 -8.52601 -6.02843 0.52149 0.61500 1.34736 1.38327 1.48900 1.93374 2.24555 2.83778 3.10294 3.24505 3.46075 3.71328 4.03067 4.23788 4.24869 4.31559 4.37300 4.64110 4.72713 4.81532 4.89499 5.11779 5.15876 5.23650 5.34555 5.59572 5.68344 5.75283 5.85931 6.03630 6.20421 6.33372 6.50610 7.04554 7.44466 7.99405 8.63264 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.006629 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.026978 B = 4222.997211 C = 4430.954765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 N -0.816 5.816 4 C 0.412 3.588 5 O -0.624 6.624 6 N -0.564 5.564 7 C -0.341 4.341 8 H 0.076 0.924 9 C -0.007 4.007 10 N -0.914 5.914 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.267 1.267 14 H -0.273 1.273 15 C -0.071 4.071 16 C -0.108 4.108 17 C -0.133 4.133 18 C -0.125 4.125 19 C -0.130 4.130 20 C -0.118 4.118 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.345 0.655 25 H 0.348 0.652 26 H 0.394 0.606 27 H 0.280 0.720 28 H 0.106 0.894 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 0.364 11.993 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 N -0.348 5.348 4 C 0.197 3.803 5 O -0.509 6.509 6 N -0.201 5.201 7 C -0.470 4.470 8 H 0.094 0.906 9 C -0.208 4.208 10 N -0.554 5.554 11 Si 0.816 3.184 12 H -0.198 1.198 13 H -0.192 1.192 14 H -0.198 1.198 15 C -0.072 4.072 16 C -0.127 4.127 17 C -0.151 4.151 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.136 4.136 21 H 0.079 0.921 22 H 0.108 0.892 23 H 0.079 0.921 24 H 0.159 0.841 25 H 0.163 0.837 26 H 0.229 0.771 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.157 0.843 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.215 -0.186 12.544 12.604 hybrid contribution 0.525 -0.193 -2.130 2.202 sum -0.690 -0.379 10.414 10.444 Atomic orbital electron populations 1.21765 0.90628 1.02553 1.03527 1.19664 0.97163 0.87958 0.89204 1.59102 1.14399 1.10271 1.51063 1.21805 0.83979 0.88276 0.86231 1.90490 1.56111 1.18411 1.85931 1.41897 1.57559 1.12725 1.07906 1.19622 1.42752 0.96381 0.88257 0.90552 1.26017 0.96880 0.96405 1.01486 1.69631 1.47718 1.08878 1.29201 0.85004 0.78654 0.77931 0.76851 1.19771 1.19164 1.19845 1.19411 0.97804 0.95270 0.94754 1.21022 1.00357 0.94440 0.96840 1.21362 0.98309 1.00526 0.94940 1.21474 0.96663 0.95757 1.00381 1.21441 1.00548 0.95757 0.97055 1.21200 0.96318 1.00601 0.95488 0.92123 0.89163 0.92070 0.84066 0.83719 0.77069 0.91045 0.87540 0.84287 0.83259 0.83472 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.38 71.98 0.60 -3.54 16 2 C 0.16 5.81 1.00 2.03 0.00 5.81 16 3 N -0.82 -25.89 7.93 -157.51 -1.25 -27.14 16 4 C 0.41 19.98 6.61 87.66 0.58 20.56 16 5 O -0.62 -35.27 15.07 -3.08 -0.05 -35.32 16 6 N -0.56 -28.76 5.18 -306.98 -1.59 -30.35 16 7 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 10 N -0.91 -48.31 13.05 21.66 0.28 -48.03 16 11 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 13 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 C -0.07 -2.56 4.50 -19.87 -0.09 -2.65 16 16 C -0.11 -3.78 8.17 22.27 0.18 -3.60 16 17 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 18 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 19 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 20 C -0.12 -3.68 9.22 22.27 0.21 -3.47 16 21 H 0.06 2.02 6.84 -2.39 -0.02 2.00 16 22 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.35 10.93 7.55 -89.69 -0.68 10.25 16 25 H 0.35 10.86 7.59 -89.70 -0.68 10.18 16 26 H 0.39 18.86 6.40 -92.71 -0.59 18.27 16 27 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.11 3.89 6.91 -2.91 -0.02 3.87 16 29 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.13 3.80 6.28 -2.91 -0.02 3.78 16 Total: -1.00 -65.99 272.79 2.07 -63.91 By element: Atomic # 1 Polarization: 48.03 SS G_CDS: -0.78 Total: 47.24 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 3.44 Total: -15.00 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -2.56 Total: -105.51 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.05 Total: -35.32 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -65.99 2.07 -63.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052882765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.469 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds