Wall clock time and date at job start Mon Mar 30 2020 03:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46509 * 120.00259 * 2 1 4 4 N 1.40100 * 120.00234 * 179.97438 * 2 1 3 5 5 C 1.29828 * 119.99389 * 0.02562 * 4 2 1 6 6 C 1.47337 * 119.99635 * 179.97438 * 5 4 2 7 7 C 1.39654 * 120.19813 * 180.02562 * 6 5 4 8 8 C 1.37906 * 119.91472 * 179.72741 * 7 6 5 9 9 C 1.38513 * 120.30799 * 0.02562 * 8 7 6 10 10 C 1.38132 * 120.40322 * 0.02562 * 9 8 7 11 11 C 1.38711 * 120.08048 * 359.95804 * 10 9 8 12 12 O 1.35632 * 120.15434 * 180.02562 * 11 10 9 13 13 C 1.34807 * 117.00027 * 354.39861 * 12 11 10 14 14 H 1.07999 * 120.00257 * 5.06721 * 13 12 11 15 15 C 1.38620 * 120.00024 * 185.06816 * 13 12 11 16 16 N 1.31574 * 120.00249 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47358 * 59.99675 * 17 15 13 19 19 H 1.48503 * 109.47006 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47176 * 299.99481 * 17 15 13 21 21 H 1.09000 * 109.47320 * 270.00736 * 1 2 3 22 22 H 1.09006 * 109.46755 * 29.99939 * 1 2 3 23 23 H 1.08992 * 109.47467 * 149.99900 * 1 2 3 24 24 H 1.08994 * 109.47017 * 240.00172 * 3 2 1 25 25 H 1.09004 * 109.46867 * 0.02562 * 3 2 1 26 26 H 1.08993 * 109.46908 * 119.99792 * 3 2 1 27 27 H 1.07996 * 120.00171 * 0.02562 * 5 4 2 28 28 H 1.08007 * 120.04197 * 359.74280 * 7 6 5 29 29 H 1.08000 * 119.85019 * 179.97438 * 8 7 6 30 30 H 1.07994 * 119.80095 * 179.97438 * 9 8 7 31 31 H 1.08002 * 119.96177 * 180.02562 * 10 9 8 32 32 H 0.97000 * 120.00697 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 7 2.1655 -1.2133 0.0005 5 6 1.5163 -2.3376 0.0005 6 6 2.2530 -3.6136 0.0005 7 6 1.5589 -4.8254 0.0000 8 6 2.2543 -6.0163 -0.0057 9 6 3.6394 -6.0169 -0.0103 10 6 4.3390 -4.8258 -0.0088 11 6 3.6561 -3.6184 -0.0034 12 8 4.3415 -2.4480 -0.0025 13 6 5.6827 -2.5243 0.1104 14 1 6.1706 -3.4878 0.1124 15 6 6.4357 -1.3660 0.2240 16 7 5.8415 -0.1921 0.2211 17 14 8.2942 -1.4717 0.3797 18 1 8.8537 -2.1473 -0.8186 19 1 8.8607 -0.1030 0.4854 20 1 8.6457 -2.2486 1.5954 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8901 -0.5139 23 1 -0.3634 -0.8899 -0.5138 24 1 2.8241 1.3265 -0.8900 25 1 1.4892 2.0973 0.0005 26 1 2.8241 1.3265 0.8900 27 1 0.4363 -2.3375 -0.0003 28 1 0.4788 -4.8299 0.0038 29 1 1.7165 -6.9528 -0.0057 30 1 4.1757 -6.9542 -0.0143 31 1 5.4190 -4.8346 -0.0129 32 1 6.3684 0.6185 0.3003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059148351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:04 Heat of formation + Delta-G solvation = 62.496963 kcal Electronic energy + Delta-G solvation = -16187.825313 eV Core-core repulsion = 13537.248562 eV Total energy + Delta-G solvation = -2650.576751 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.89996 -36.69809 -36.12222 -32.66667 -32.08129 -29.66346 -28.56238 -27.57495 -25.27298 -24.26679 -21.44016 -21.40950 -18.86424 -17.81484 -16.60406 -16.37921 -15.06403 -14.51903 -14.36854 -14.18359 -13.98804 -13.48926 -13.35767 -12.49920 -12.32506 -12.07193 -11.93610 -11.59043 -11.47367 -11.43400 -10.90441 -10.70537 -10.61673 -10.56835 -10.38328 -9.35250 -8.79193 -8.73684 -8.25401 -7.34424 -6.52188 -6.32201 -3.88642 1.92360 2.51250 3.18225 3.19586 3.20904 3.48490 3.53443 4.03972 4.78550 5.22410 5.26774 5.37176 5.51854 5.59320 5.71210 5.78859 5.84112 5.93287 6.06088 6.29052 6.35649 6.41017 6.57256 6.77732 6.88116 6.98945 7.20940 7.38720 7.46978 7.51492 7.81049 7.93419 8.08596 9.10460 9.24302 9.86657 10.82296 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.011620 C = 0.006749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.401897 B = 2409.148962 C = 4147.551228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.560 5.560 3 C 0.146 3.854 4 N -0.163 5.163 5 C 0.037 3.963 6 C -0.118 4.118 7 C -0.058 4.058 8 C -0.220 4.220 9 C -0.070 4.070 10 C -0.237 4.237 11 C 0.165 3.835 12 O -0.131 6.131 13 C -0.397 4.397 14 H 0.088 0.912 15 C 0.045 3.955 16 N -0.839 5.839 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.271 1.271 21 H 0.036 0.964 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -2.141 -0.296 7.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.377 5.377 3 C 0.003 3.997 4 N 0.031 4.969 5 C -0.172 4.172 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.239 4.239 9 C -0.090 4.090 10 C -0.257 4.257 11 C 0.107 3.893 12 O -0.030 6.030 13 C -0.473 4.473 14 H 0.105 0.895 15 C -0.161 4.161 16 N -0.473 5.473 17 Si 0.759 3.241 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.197 1.197 21 H 0.054 0.946 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.190 -0.946 -0.300 6.269 hybrid contribution 0.042 -0.374 0.089 0.386 sum -6.148 -1.319 -0.211 6.292 Atomic orbital electron populations 1.21746 0.83681 1.01788 1.00087 1.50124 1.01302 1.02503 1.83731 1.21093 0.95244 0.81059 1.02349 1.75242 1.22818 0.91455 1.07352 1.23794 0.95852 0.91131 1.06414 1.17480 0.89772 0.90897 1.14067 1.20629 0.98093 0.90966 0.98169 1.20420 0.94065 0.96723 1.12735 1.20794 0.94040 0.96711 0.97431 1.21115 1.00533 0.92047 1.11991 1.19467 0.90825 0.86781 0.92267 1.84184 1.19639 1.23816 1.75312 1.21338 0.79295 0.94552 1.52137 0.89485 1.25208 0.99895 0.94347 0.96657 1.70114 1.35677 0.97155 1.44306 0.85899 0.81356 0.77757 0.79069 1.19681 1.20419 1.19674 0.94602 0.92122 0.92361 0.92964 0.92564 0.92728 0.88544 0.87027 0.87633 0.87686 0.85599 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.14 59.84 0.61 1.71 16 2 N -0.56 -11.30 4.26 -129.21 -0.55 -11.85 16 3 C 0.15 2.70 11.16 59.85 0.67 3.37 16 4 N -0.16 -3.92 9.36 32.14 0.30 -3.62 16 5 C 0.04 0.80 10.15 -14.70 -0.15 0.65 16 6 C -0.12 -2.62 5.88 -104.89 -0.62 -3.24 16 7 C -0.06 -1.06 9.78 -39.17 -0.38 -1.44 16 8 C -0.22 -3.88 10.03 -39.60 -0.40 -4.28 16 9 C -0.07 -1.33 10.03 -39.52 -0.40 -1.72 16 10 C -0.24 -5.32 9.16 -39.45 -0.36 -5.68 16 11 C 0.16 4.13 6.66 -38.62 -0.26 3.87 16 12 O -0.13 -3.75 7.64 0.48 0.00 -3.75 16 13 C -0.40 -11.17 9.48 30.87 0.29 -10.87 16 14 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 15 C 0.05 1.23 5.49 -17.52 -0.10 1.14 16 16 N -0.84 -24.10 13.67 55.48 0.76 -23.34 16 17 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.76 7.92 -51.93 -0.41 0.34 16 23 H 0.06 0.84 6.19 -51.93 -0.32 0.52 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.79 7.80 -51.93 -0.40 0.39 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 1.73 5.91 -52.49 -0.31 1.42 16 28 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -31.80 279.35 -5.08 -36.88 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.69 Total: 2.33 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.09 Total: -16.50 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.51 Total: -38.82 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: 0.00 Total: -3.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.80 -5.08 -36.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059148351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.378 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds