Wall clock time and date at job start Mon Mar 30 2020 03:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46509 * 120.00259 * 2 1 4 4 N 1.40100 * 120.00234 * 179.97438 * 2 1 3 5 5 C 1.29828 * 119.99389 * 0.02562 * 4 2 1 6 6 C 1.47337 * 119.99635 * 179.97438 * 5 4 2 7 7 C 1.39654 * 120.19813 * 180.02562 * 6 5 4 8 8 C 1.37906 * 119.91472 * 179.72741 * 7 6 5 9 9 C 1.38513 * 120.30799 * 0.02562 * 8 7 6 10 10 C 1.38132 * 120.40322 * 0.02562 * 9 8 7 11 11 C 1.38711 * 120.08048 * 359.95804 * 10 9 8 12 12 O 1.35632 * 120.15434 * 180.02562 * 11 10 9 13 13 C 1.34807 * 117.00027 * 354.39861 * 12 11 10 14 14 H 1.07999 * 120.00257 * 5.06721 * 13 12 11 15 15 C 1.38620 * 120.00024 * 185.06816 * 13 12 11 16 16 N 1.31574 * 120.00249 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00012 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47358 * 59.99675 * 17 15 13 19 19 H 1.48503 * 109.47006 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47176 * 299.99481 * 17 15 13 21 21 H 1.09000 * 109.47320 * 270.00736 * 1 2 3 22 22 H 1.09006 * 109.46755 * 29.99939 * 1 2 3 23 23 H 1.08992 * 109.47467 * 149.99900 * 1 2 3 24 24 H 1.08994 * 109.47017 * 240.00172 * 3 2 1 25 25 H 1.09004 * 109.46867 * 0.02562 * 3 2 1 26 26 H 1.08993 * 109.46908 * 119.99792 * 3 2 1 27 27 H 1.07996 * 120.00171 * 0.02562 * 5 4 2 28 28 H 1.08007 * 120.04197 * 359.74280 * 7 6 5 29 29 H 1.08000 * 119.85019 * 179.97438 * 8 7 6 30 30 H 1.07994 * 119.80095 * 179.97438 * 9 8 7 31 31 H 1.08002 * 119.96177 * 180.02562 * 10 9 8 32 32 H 0.97000 * 120.00697 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 7 2.1655 -1.2133 0.0005 5 6 1.5163 -2.3376 0.0005 6 6 2.2530 -3.6136 0.0005 7 6 1.5589 -4.8254 0.0000 8 6 2.2543 -6.0163 -0.0057 9 6 3.6394 -6.0169 -0.0103 10 6 4.3390 -4.8258 -0.0088 11 6 3.6561 -3.6184 -0.0034 12 8 4.3415 -2.4480 -0.0025 13 6 5.6827 -2.5243 0.1104 14 1 6.1706 -3.4878 0.1124 15 6 6.4357 -1.3660 0.2240 16 7 5.8415 -0.1921 0.2211 17 14 8.2942 -1.4717 0.3797 18 1 8.8537 -2.1473 -0.8186 19 1 8.8607 -0.1030 0.4854 20 1 8.6457 -2.2486 1.5954 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8901 -0.5139 23 1 -0.3634 -0.8899 -0.5138 24 1 2.8241 1.3265 -0.8900 25 1 1.4892 2.0973 0.0005 26 1 2.8241 1.3265 0.8900 27 1 0.4363 -2.3375 -0.0003 28 1 0.4788 -4.8299 0.0038 29 1 1.7165 -6.9528 -0.0057 30 1 4.1757 -6.9542 -0.0143 31 1 5.4190 -4.8346 -0.0129 32 1 6.3684 0.6185 0.3003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059148351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:04 Heat of formation + Delta-G solvation = 41.318351 kcal Electronic energy + Delta-G solvation = -16188.743687 eV Core-core repulsion = 13537.248562 eV Total energy + Delta-G solvation = -2651.495124 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61721 -38.29766 -37.78991 -34.32911 -33.94984 -31.25703 -30.22512 -28.89278 -27.25199 -25.80553 -23.12714 -22.98458 -20.45827 -19.65531 -18.36729 -17.95466 -16.65681 -16.20679 -15.86874 -15.80669 -15.53903 -15.30872 -14.97646 -14.20553 -13.89857 -13.47254 -13.43793 -13.28633 -13.16219 -12.75227 -12.60448 -12.33164 -12.21466 -12.16131 -12.04724 -11.16855 -10.69025 -10.36130 -9.82148 -9.00909 -8.31117 -8.14154 -5.96704 0.32523 0.88744 1.35806 1.46653 1.50033 1.93655 2.05288 2.22817 2.99552 3.38177 3.66529 3.91427 4.07530 4.31710 4.36508 4.39073 4.51052 4.56260 4.74019 4.78279 4.82077 4.90191 5.01789 5.17862 5.20633 5.35683 5.45330 5.80118 5.83402 5.88581 6.13116 6.33991 6.38015 7.09750 7.71210 7.98394 8.87352 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.011620 C = 0.006749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.401897 B = 2409.148962 C = 4147.551228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.570 5.570 3 C 0.150 3.850 4 N -0.224 5.224 5 C 0.037 3.963 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.197 4.197 9 C -0.067 4.067 10 C -0.259 4.259 11 C 0.123 3.877 12 O -0.177 6.177 13 C -0.424 4.424 14 H 0.092 0.908 15 C -0.013 4.013 16 N -0.889 5.889 17 Si 1.008 2.992 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.263 1.263 21 H 0.047 0.953 22 H 0.091 0.909 23 H 0.066 0.934 24 H 0.025 0.975 25 H 0.107 0.893 26 H 0.024 0.976 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.114 0.886 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 -4.361 -0.300 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.388 5.388 3 C 0.007 3.993 4 N -0.031 5.031 5 C -0.172 4.172 6 C -0.142 4.142 7 C -0.070 4.070 8 C -0.216 4.216 9 C -0.086 4.086 10 C -0.279 4.279 11 C 0.069 3.931 12 O -0.079 6.079 13 C -0.500 4.500 14 H 0.109 0.891 15 C -0.213 4.213 16 N -0.524 5.524 17 Si 0.828 3.172 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.187 1.187 21 H 0.065 0.935 22 H 0.109 0.891 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.126 0.874 26 H 0.042 0.958 27 H 0.150 0.850 28 H 0.174 0.826 29 H 0.172 0.828 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.247 -3.218 -0.307 8.858 hybrid contribution 0.372 0.069 0.080 0.387 sum -7.874 -3.149 -0.227 8.484 Atomic orbital electron populations 1.21972 0.80380 1.03687 1.01323 1.50304 1.03392 1.01485 1.83591 1.21078 0.96095 0.82567 0.99582 1.75161 1.26029 0.93364 1.08512 1.24104 0.97426 0.90334 1.05365 1.18084 0.89061 0.93032 1.14027 1.21177 1.00347 0.89578 0.95931 1.21059 0.93598 0.98421 1.08493 1.21243 0.95142 0.96620 0.95620 1.21249 1.00369 0.92907 1.13333 1.20174 0.92438 0.86979 0.93554 1.84182 1.19586 1.25655 1.78505 1.21768 0.80153 0.95176 1.52938 0.89051 1.26352 1.04969 0.93769 0.96230 1.70280 1.37480 0.97803 1.46880 0.84816 0.74896 0.78040 0.79435 1.18679 1.19734 1.18749 0.93473 0.89055 0.91574 0.95656 0.87428 0.95757 0.84956 0.82568 0.82790 0.84056 0.86834 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.98 10.14 127.77 1.30 3.27 16 2 N -0.57 -23.20 4.26 -562.69 -2.40 -25.60 16 3 C 0.15 5.76 11.16 127.77 1.43 7.19 16 4 N -0.22 -11.16 9.36 -52.24 -0.49 -11.65 16 5 C 0.04 1.57 10.15 87.39 0.89 2.45 16 6 C -0.14 -6.05 5.88 -20.04 -0.12 -6.17 16 7 C -0.05 -1.64 9.78 22.53 0.22 -1.42 16 8 C -0.20 -5.94 10.03 22.26 0.22 -5.72 16 9 C -0.07 -2.33 10.03 22.31 0.22 -2.10 16 10 C -0.26 -11.71 9.16 22.36 0.20 -11.51 16 11 C 0.12 6.38 6.66 22.89 0.15 6.53 16 12 O -0.18 -10.81 7.64 -21.20 -0.16 -10.98 16 13 C -0.42 -25.36 9.48 67.91 0.64 -24.71 16 14 H 0.09 5.10 5.21 -2.91 -0.02 5.08 16 15 C -0.01 -0.76 5.49 84.82 0.47 -0.29 16 16 N -0.89 -54.50 13.67 21.61 0.30 -54.20 16 17 Si 1.01 44.24 29.55 68.60 2.03 46.27 16 18 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.09 1.98 7.92 -2.38 -0.02 1.96 16 23 H 0.07 1.72 6.19 -2.39 -0.01 1.71 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.11 2.91 7.80 -2.38 -0.02 2.89 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.13 4.42 5.91 -2.91 -0.02 4.40 16 28 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.11 5.26 5.64 -2.91 -0.02 5.25 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -76.29 279.35 6.02 -70.27 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.12 Total: 18.35 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 5.63 Total: -32.46 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -2.59 Total: -91.45 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.16 Total: -10.98 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -76.29 6.02 -70.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059148351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.593 kcal (2) G-P(sol) polarization free energy of solvation -76.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds