Wall clock time and date at job start Mon Mar 30 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 110.99831 * 2 1 4 4 C 1.46899 * 111.00297 * 123.95331 * 2 1 3 5 5 C 1.47201 * 109.47292 * 186.84793 * 4 2 1 6 6 N 3.39319 * 156.73104 * 111.32376 * 2 1 3 7 7 C 1.53003 * 109.47068 * 306.84629 * 4 2 1 8 8 C 1.50694 * 109.47302 * 293.90294 * 7 4 2 9 9 H 1.08002 * 119.99967 * 354.98341 * 8 7 4 10 10 C 1.37880 * 120.00170 * 174.98116 * 8 7 4 11 11 N 1.31514 * 119.99486 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99983 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47204 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.46986 * 119.99945 * 12 10 8 15 15 H 1.48497 * 109.46893 * 239.99784 * 12 10 8 16 16 C 1.50702 * 109.47323 * 66.84618 * 4 2 1 17 17 C 1.34520 * 125.78249 * 24.78290 * 16 4 2 18 18 C 1.41390 * 106.83658 * 179.97438 * 17 16 4 19 19 C 1.34513 * 106.83877 * 359.97438 * 18 17 16 20 20 O 1.34298 * 108.42521 * 0.02562 * 19 18 17 21 21 H 1.09004 * 109.47166 * 302.01255 * 1 2 3 22 22 H 1.08990 * 109.47231 * 62.01553 * 1 2 3 23 23 H 1.09000 * 109.46953 * 182.01502 * 1 2 3 24 24 H 1.09001 * 109.47061 * 173.57568 * 3 2 1 25 25 H 1.08992 * 109.47392 * 293.57707 * 3 2 1 26 26 H 1.09002 * 109.46861 * 53.58189 * 3 2 1 27 27 H 1.08999 * 109.46802 * 53.90959 * 7 4 2 28 28 H 1.09001 * 109.47035 * 173.90459 * 7 4 2 29 29 H 0.97007 * 119.99199 * 180.02562 * 11 10 8 30 30 H 1.07994 * 126.58476 * 359.71031 * 17 16 4 31 31 H 1.07999 * 126.58061 * 180.02562 * 18 17 16 32 32 H 1.08003 * 125.78384 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4577 -0.6087 1.2003 6 7 4.5861 -0.4874 1.2487 7 6 1.3707 -0.2475 2.4344 8 6 1.8340 1.1643 2.6859 9 1 2.5688 1.6154 2.0356 10 6 1.3197 1.8801 3.7462 11 7 0.4252 1.3305 4.5384 12 14 1.8935 3.6303 4.0575 13 1 2.8972 4.0119 3.0318 14 1 0.7323 4.5527 3.9817 15 1 2.5075 3.7172 5.4067 16 6 1.6540 -2.2234 0.9631 17 6 1.4124 -2.8399 -0.2079 18 6 1.1366 -4.1939 0.0915 19 6 1.2268 -4.3238 1.4273 20 8 1.5401 -3.1271 1.9500 21 1 -0.3634 0.5448 0.8714 22 1 -0.3633 0.4822 -0.9074 23 1 -0.3633 -1.0270 0.0361 24 1 3.0790 1.3447 0.1150 25 1 1.7418 1.8580 -0.9418 26 1 1.5559 1.9293 0.8270 27 1 0.2844 -0.2632 2.3460 28 1 1.6768 -0.8837 3.2649 29 1 0.0632 1.8343 5.2841 30 1 1.4224 -2.3866 -1.1880 31 1 0.8999 -4.9743 -0.6166 32 1 1.0724 -5.2358 1.9849 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075603473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:37 Heat of formation + Delta-G solvation = 70.387680 kcal Electronic energy + Delta-G solvation = -16862.110367 eV Core-core repulsion = 14211.875783 eV Total energy + Delta-G solvation = -2650.234584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.26466 -38.56310 -35.14363 -33.00145 -32.49437 -31.05748 -28.61871 -27.02144 -26.08598 -22.75834 -21.53436 -21.09904 -20.31204 -17.88570 -16.74566 -16.33984 -15.38923 -14.99510 -14.82964 -14.01178 -13.59932 -13.51302 -12.82947 -12.47977 -12.40475 -12.20608 -12.03604 -11.69717 -11.68094 -11.44036 -11.15193 -11.01716 -10.90329 -10.66762 -10.53308 -10.01167 -9.52784 -9.28090 -8.58097 -8.13498 -7.62687 -6.21272 -4.23329 2.05778 2.94336 3.08064 3.20306 3.29564 3.32376 3.36893 3.67417 4.29479 4.52214 4.88628 5.07353 5.17567 5.37791 5.44329 5.71324 6.03389 6.06140 6.15396 6.18308 6.33442 6.38965 6.43111 6.54388 6.84620 6.88847 7.09932 7.29223 7.44931 7.50391 7.64385 7.72036 8.04806 8.23997 8.76423 9.38915 10.89161 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.008986 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.313403 B = 3115.057173 C = 3283.349890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.518 5.518 3 C 0.002 3.998 4 C 0.284 3.716 5 C 0.257 3.743 6 N -0.448 5.448 7 C 0.004 3.996 8 C -0.539 4.539 9 H 0.073 0.927 10 C 0.067 3.933 11 N -0.883 5.883 12 Si 0.889 3.111 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.008 3.992 17 C -0.186 4.186 18 C -0.221 4.221 19 C -0.046 4.046 20 O -0.163 6.163 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -6.416 -7.944 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.244 5.244 3 C -0.146 4.146 4 C 0.191 3.809 5 C -0.061 4.061 6 N -0.125 5.125 7 C -0.035 4.035 8 C -0.576 4.576 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.520 5.520 12 Si 0.716 3.284 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.208 1.208 16 C -0.044 4.044 17 C -0.205 4.205 18 C -0.241 4.241 19 C -0.114 4.114 20 O -0.058 6.058 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.949 -6.358 -7.837 10.137 hybrid contribution -0.507 1.046 0.848 1.439 sum -1.456 -5.312 -6.990 8.899 Atomic orbital electron populations 1.22477 0.86452 1.02222 1.01744 1.62260 1.08953 1.14761 1.38384 1.23090 1.00099 0.88790 1.02593 1.16789 0.82371 0.85558 0.96157 1.28246 0.93932 0.92106 0.91811 1.81014 1.12759 1.09001 1.09677 1.19848 0.97742 0.97040 0.88917 1.21411 1.24896 0.97929 1.13402 0.90888 1.24943 0.94765 0.98408 0.95504 1.69967 1.28389 1.37163 1.16494 0.86571 0.78796 0.84436 0.78612 1.19444 1.20694 1.20787 1.21822 1.05570 0.91006 0.85980 1.21591 1.06590 0.93251 0.99063 1.21814 1.08910 0.97622 0.95726 1.24007 1.05369 0.87838 0.94189 1.84066 1.67896 1.17347 1.36462 0.92580 0.91641 0.91671 0.92550 0.92565 0.88919 0.92957 0.94964 0.92669 0.82869 0.83778 0.78428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.53 60.06 0.51 0.82 16 2 N -0.52 -9.44 4.35 -240.07 -1.04 -10.49 16 3 C 0.00 0.03 7.86 60.07 0.47 0.50 16 4 C 0.28 5.83 0.59 -135.54 -0.08 5.75 16 5 C 0.26 5.70 10.77 -20.76 -0.22 5.48 16 6 N -0.45 -10.34 18.54 42.15 0.78 -9.56 16 7 C 0.00 0.08 3.53 -27.88 -0.10 -0.01 16 8 C -0.54 -13.75 6.20 -34.44 -0.21 -13.96 16 9 H 0.07 1.84 4.52 -52.49 -0.24 1.60 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 11 N -0.88 -24.58 13.29 55.43 0.74 -23.84 16 12 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.01 0.16 4.97 -35.62 -0.18 -0.02 16 17 C -0.19 -2.97 9.17 -39.70 -0.36 -3.34 16 18 C -0.22 -3.04 10.91 -39.70 -0.43 -3.47 16 19 C -0.05 -0.65 12.09 29.42 0.36 -0.29 16 20 O -0.16 -3.03 10.22 5.73 0.06 -2.97 16 21 H 0.06 1.05 6.43 -51.93 -0.33 0.71 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 1.03 6.44 -51.93 -0.33 0.69 16 24 H 0.06 1.11 6.10 -51.93 -0.32 0.79 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.91 4.99 -51.93 -0.26 1.65 16 27 H 0.05 1.29 6.10 -51.93 -0.32 0.97 16 28 H 0.03 0.85 7.90 -51.93 -0.41 0.44 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 30 H 0.15 2.28 7.99 -52.49 -0.42 1.86 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.20 1.93 8.06 -52.48 -0.42 1.50 16 LS Contribution 268.47 15.07 4.05 4.05 Total: -1.00 -28.97 268.47 -4.24 -33.21 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.45 Total: 0.92 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.35 Total: -6.86 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.47 Total: -43.89 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: 0.06 Total: -2.97 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.97 -4.24 -33.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.596 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds