Wall clock time and date at job start Mon Mar 30 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 110.99831 * 2 1 4 4 C 1.46899 * 111.00297 * 123.95331 * 2 1 3 5 5 C 1.47201 * 109.47292 * 186.84793 * 4 2 1 6 6 N 3.39319 * 156.73104 * 111.32376 * 2 1 3 7 7 C 1.53003 * 109.47068 * 306.84629 * 4 2 1 8 8 C 1.50694 * 109.47302 * 293.90294 * 7 4 2 9 9 H 1.08002 * 119.99967 * 354.98341 * 8 7 4 10 10 C 1.37880 * 120.00170 * 174.98116 * 8 7 4 11 11 N 1.31514 * 119.99486 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99983 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47204 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.46986 * 119.99945 * 12 10 8 15 15 H 1.48497 * 109.46893 * 239.99784 * 12 10 8 16 16 C 1.50702 * 109.47323 * 66.84618 * 4 2 1 17 17 C 1.34520 * 125.78249 * 24.78290 * 16 4 2 18 18 C 1.41390 * 106.83658 * 179.97438 * 17 16 4 19 19 C 1.34513 * 106.83877 * 359.97438 * 18 17 16 20 20 O 1.34298 * 108.42521 * 0.02562 * 19 18 17 21 21 H 1.09004 * 109.47166 * 302.01255 * 1 2 3 22 22 H 1.08990 * 109.47231 * 62.01553 * 1 2 3 23 23 H 1.09000 * 109.46953 * 182.01502 * 1 2 3 24 24 H 1.09001 * 109.47061 * 173.57568 * 3 2 1 25 25 H 1.08992 * 109.47392 * 293.57707 * 3 2 1 26 26 H 1.09002 * 109.46861 * 53.58189 * 3 2 1 27 27 H 1.08999 * 109.46802 * 53.90959 * 7 4 2 28 28 H 1.09001 * 109.47035 * 173.90459 * 7 4 2 29 29 H 0.97007 * 119.99199 * 180.02562 * 11 10 8 30 30 H 1.07994 * 126.58476 * 359.71031 * 17 16 4 31 31 H 1.07999 * 126.58061 * 180.02562 * 18 17 16 32 32 H 1.08003 * 125.78384 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4577 -0.6087 1.2003 6 7 4.5861 -0.4874 1.2487 7 6 1.3707 -0.2475 2.4344 8 6 1.8340 1.1643 2.6859 9 1 2.5688 1.6154 2.0356 10 6 1.3197 1.8801 3.7462 11 7 0.4252 1.3305 4.5384 12 14 1.8935 3.6303 4.0575 13 1 2.8972 4.0119 3.0318 14 1 0.7323 4.5527 3.9817 15 1 2.5075 3.7172 5.4067 16 6 1.6540 -2.2234 0.9631 17 6 1.4124 -2.8399 -0.2079 18 6 1.1366 -4.1939 0.0915 19 6 1.2268 -4.3238 1.4273 20 8 1.5401 -3.1271 1.9500 21 1 -0.3634 0.5448 0.8714 22 1 -0.3633 0.4822 -0.9074 23 1 -0.3633 -1.0270 0.0361 24 1 3.0790 1.3447 0.1150 25 1 1.7418 1.8580 -0.9418 26 1 1.5559 1.9293 0.8270 27 1 0.2844 -0.2632 2.3460 28 1 1.6768 -0.8837 3.2649 29 1 0.0632 1.8343 5.2841 30 1 1.4224 -2.3866 -1.1880 31 1 0.8999 -4.9743 -0.6166 32 1 1.0724 -5.2358 1.9849 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075603473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:37 Heat of formation + Delta-G solvation = 51.229967 kcal Electronic energy + Delta-G solvation = -16862.941108 eV Core-core repulsion = 14211.875783 eV Total energy + Delta-G solvation = -2651.065324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.52232 -40.14921 -36.88192 -34.92483 -33.77440 -32.57962 -30.24597 -28.47265 -27.68854 -24.53504 -23.04277 -22.34540 -21.67750 -19.33200 -18.55383 -17.87607 -16.77228 -16.70792 -16.27746 -15.68742 -15.24570 -15.00972 -14.43711 -14.20143 -13.74042 -13.60363 -13.42130 -13.32219 -13.24459 -13.15407 -12.96271 -12.55179 -12.45754 -12.38919 -12.28700 -11.84211 -11.19184 -10.70894 -10.62277 -9.37474 -9.20193 -8.25321 -6.31566 0.79357 1.35101 1.39206 1.48879 1.58381 1.62696 1.83429 2.13672 2.35793 2.96060 3.08799 3.39788 3.77057 4.20557 4.29442 4.31516 4.47209 4.69089 4.83796 4.95417 5.01480 5.14267 5.16136 5.22072 5.23807 5.34569 5.38776 5.66038 5.72721 5.91479 6.00669 6.06002 6.35685 6.48823 6.75082 7.33129 8.86161 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.008986 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.313403 B = 3115.057173 C = 3283.349890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.506 5.506 3 C 0.004 3.996 4 C 0.289 3.711 5 C 0.261 3.739 6 N -0.472 5.472 7 C 0.016 3.984 8 C -0.539 4.539 9 H 0.075 0.925 10 C 0.018 3.982 11 N -0.918 5.918 12 Si 0.946 3.054 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.286 1.286 16 C -0.037 4.037 17 C -0.168 4.168 18 C -0.220 4.220 19 C -0.041 4.041 20 O -0.197 6.197 21 H 0.027 0.973 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.041 0.959 28 H -0.005 1.005 29 H 0.265 0.735 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 -7.083 -9.783 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.143 4.143 4 C 0.197 3.803 5 C -0.057 4.057 6 N -0.148 5.148 7 C -0.023 4.023 8 C -0.576 4.576 9 H 0.093 0.907 10 C -0.182 4.182 11 N -0.558 5.558 12 Si 0.772 3.228 13 H -0.189 1.189 14 H -0.196 1.196 15 H -0.212 1.212 16 C -0.088 4.088 17 C -0.187 4.187 18 C -0.238 4.238 19 C -0.108 4.108 20 O -0.093 6.093 21 H 0.046 0.954 22 H 0.117 0.883 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.014 0.986 29 H 0.074 0.926 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.379 -7.022 -9.697 12.052 hybrid contribution -0.396 1.146 1.393 1.847 sum -1.775 -5.876 -8.304 10.327 Atomic orbital electron populations 1.22516 0.85090 1.02695 1.02075 1.62402 1.09935 1.14284 1.36519 1.23004 0.98917 0.88860 1.03514 1.16616 0.81060 0.87653 0.95019 1.28740 0.94521 0.91285 0.91147 1.80984 1.13496 1.09984 1.10366 1.19599 0.97128 0.95765 0.89844 1.21707 1.24269 0.98635 1.13030 0.90697 1.25688 0.95008 1.01991 0.95525 1.70074 1.29813 1.38652 1.17229 0.85668 0.78642 0.80449 0.78082 1.18888 1.19615 1.21222 1.21573 1.09629 0.90428 0.87169 1.21860 1.04151 0.94244 0.98473 1.22218 1.08138 0.97295 0.96181 1.24970 1.03206 0.87482 0.95173 1.84040 1.68880 1.18849 1.37521 0.95400 0.88256 0.90953 0.94088 0.88987 0.91348 0.94120 0.98644 0.92637 0.81631 0.80086 0.74466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 8.53 127.69 1.09 1.83 16 2 N -0.51 -17.93 4.35 -913.46 -3.97 -21.90 16 3 C 0.00 0.16 7.86 127.69 1.00 1.16 16 4 C 0.29 11.96 0.59 0.98 0.00 11.96 16 5 C 0.26 11.70 10.77 89.44 0.96 12.66 16 6 N -0.47 -21.98 18.54 20.01 0.37 -21.61 16 7 C 0.02 0.79 3.53 29.85 0.11 0.89 16 8 C -0.54 -28.14 6.20 25.60 0.16 -27.99 16 9 H 0.08 3.83 4.52 -2.91 -0.01 3.82 16 10 C 0.02 0.96 5.46 84.66 0.46 1.42 16 11 N -0.92 -52.54 13.29 21.45 0.28 -52.26 16 12 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 13 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 16 C -0.04 -1.37 4.97 24.83 0.12 -1.24 16 17 C -0.17 -4.99 9.17 22.19 0.20 -4.79 16 18 C -0.22 -5.26 10.91 22.19 0.24 -5.02 16 19 C -0.04 -1.06 12.09 66.97 0.81 -0.25 16 20 O -0.20 -7.25 10.22 -2.41 -0.02 -7.27 16 21 H 0.03 1.04 6.43 -2.38 -0.02 1.02 16 22 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 23 H 0.07 2.17 6.44 -2.39 -0.02 2.15 16 24 H 0.04 1.59 6.10 -2.39 -0.01 1.57 16 25 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.07 2.80 4.99 -2.39 -0.01 2.79 16 27 H 0.04 2.09 6.10 -2.39 -0.01 2.07 16 28 H 0.00 -0.27 7.90 -2.39 -0.02 -0.29 16 29 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 30 H 0.17 4.42 7.99 -2.91 -0.02 4.39 16 31 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.24 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -64.10 268.47 4.98 -59.12 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.14 Total: 8.58 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.16 Total: -9.34 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -3.32 Total: -95.76 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.02 Total: -7.27 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -64.10 4.98 -59.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.348 kcal (2) G-P(sol) polarization free energy of solvation -64.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds