Wall clock time and date at job start Mon Mar 30 2020 03:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47117 * 2 1 4 4 C 1.50696 * 109.47393 * 119.99910 * 2 1 3 5 5 H 1.08004 * 120.00177 * 119.99456 * 4 2 1 6 6 C 1.37878 * 120.00186 * 300.00169 * 4 2 1 7 7 N 1.31515 * 119.99651 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00330 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47322 * 59.99764 * 8 6 4 10 10 H 1.48498 * 109.47603 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47320 * 300.00119 * 8 6 4 12 12 C 1.50702 * 109.47353 * 240.00215 * 2 1 3 13 13 O 1.21420 * 119.99695 * 270.00020 * 12 2 1 14 14 C 1.41478 * 120.00403 * 89.99996 * 12 2 1 15 15 C 1.38183 * 126.97407 * 0.02562 * 14 12 2 16 16 N 1.33154 * 107.54536 * 179.97438 * 15 14 12 17 17 C 1.30918 * 109.83182 * 0.02562 * 16 15 14 18 18 N 1.34391 * 109.48702 * 0.02562 * 17 16 15 19 19 C 1.46503 * 126.45601 * 179.97438 * 18 17 16 20 20 C 1.53007 * 117.49930 * 8.71578 * 19 18 17 21 21 C 1.53002 * 117.49581 * 300.05722 * 19 18 17 22 22 H 1.08997 * 109.46592 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47059 * 300.00269 * 1 2 3 24 24 H 1.08999 * 109.46696 * 59.99949 * 1 2 3 25 25 H 0.97001 * 119.99703 * 179.97438 * 7 6 4 26 26 H 1.08004 * 126.22401 * 0.24202 * 15 14 12 27 27 H 1.07994 * 125.25934 * 179.97438 * 17 16 15 28 28 H 1.08998 * 115.55207 * 154.38774 * 19 18 17 29 29 H 1.09001 * 117.49506 * 0.02562 * 20 19 18 30 30 H 1.09002 * 117.49661 * 145.02280 * 20 19 18 31 31 H 1.08999 * 117.49681 * 214.98093 * 21 19 18 32 32 H 1.09002 * 117.50012 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8261 -0.4206 5.2205 11 1 1.8260 -2.5202 4.0078 12 6 2.0324 -0.7104 -1.2305 13 8 2.2348 -1.9072 -1.2004 14 6 2.2682 0.0172 -2.4207 15 6 2.0886 1.3735 -2.6152 16 7 2.4261 1.6467 -3.8739 17 6 2.8049 0.5499 -4.4802 18 7 2.7248 -0.4849 -3.6265 19 6 3.0589 -1.8813 -3.9174 20 6 3.7393 -2.1811 -5.2547 21 6 2.2772 -2.5768 -5.0337 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7090 1.1614 3.4844 26 1 1.7419 2.0834 -1.8787 27 1 3.1305 0.4864 -5.5080 28 1 3.3519 -2.4836 -3.0575 29 1 3.9387 -1.3393 -5.9177 30 1 4.4796 -2.9809 -5.2745 31 1 2.0562 -3.6368 -4.9083 32 1 1.5140 -1.9956 -5.5513 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085189862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:19 Heat of formation + Delta-G solvation = 48.271619 kcal Electronic energy + Delta-G solvation = -16281.584602 eV Core-core repulsion = 13630.390994 eV Total energy + Delta-G solvation = -2651.193608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95791 -38.18150 -37.34212 -33.80507 -31.82430 -30.97884 -29.13709 -25.18671 -24.32139 -23.07920 -22.77966 -21.56504 -20.10081 -18.64855 -17.01895 -16.18941 -15.73648 -15.06942 -15.00197 -14.54620 -14.03833 -13.68160 -13.40816 -13.07249 -12.81086 -12.33226 -11.86997 -11.53297 -11.37045 -11.07222 -10.91545 -10.74288 -10.67217 -10.27226 -10.09267 -9.85859 -9.25559 -9.00789 -8.61921 -8.35157 -8.20967 -6.04381 -4.09478 1.47031 2.69061 3.03603 3.33663 3.37066 3.41463 3.54996 3.86022 4.30807 4.42006 4.59286 4.66592 4.70350 4.98785 5.28572 5.28920 5.49575 5.54394 5.61347 5.74059 5.84586 6.16829 6.60723 6.73774 6.87407 6.91992 7.00811 7.29099 7.50212 7.76059 7.99464 8.12282 8.23751 8.61634 8.94003 9.54879 11.02538 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.035539 B = 0.006980 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.682869 B = 4010.602545 C = 4461.325744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.018 3.982 3 H 0.053 0.947 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.427 3.573 13 O -0.480 6.480 14 C -0.098 4.098 15 C 0.055 3.945 16 N -0.501 5.501 17 C 0.186 3.814 18 N -0.403 5.403 19 C 0.060 3.940 20 C -0.177 4.177 21 C -0.175 4.175 22 H 0.031 0.969 23 H 0.095 0.905 24 H 0.015 0.985 25 H 0.263 0.737 26 H 0.188 0.812 27 H 0.201 0.799 28 H 0.156 0.844 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -2.949 -13.648 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.002 4.002 3 H 0.071 0.929 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.357 6.357 14 C -0.211 4.211 15 C -0.099 4.099 16 N -0.219 5.219 17 C -0.095 4.095 18 N -0.083 5.083 19 C -0.044 4.044 20 C -0.215 4.215 21 C -0.213 4.213 22 H 0.050 0.950 23 H 0.114 0.886 24 H 0.034 0.966 25 H 0.072 0.928 26 H 0.204 0.796 27 H 0.218 0.782 28 H 0.173 0.827 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.917 -2.859 -13.884 14.472 hybrid contribution 0.350 -1.119 1.057 1.579 sum 3.267 -3.978 -12.827 13.822 Atomic orbital electron populations 1.21672 0.95779 0.99953 1.01185 1.19042 0.94442 0.97145 0.89554 0.92893 1.20987 1.31609 1.12566 0.89360 0.91706 1.24917 0.94994 0.94987 0.98992 1.69854 1.36613 1.22794 1.23744 0.86545 0.79209 0.79791 0.81832 1.20233 1.21208 1.20194 1.21358 0.72517 0.88254 0.87140 1.90366 1.41976 1.17426 1.85926 1.21711 1.13440 0.96478 0.89508 1.23273 1.00177 0.92725 0.93696 1.70102 1.17919 1.26571 1.07334 1.24879 1.04367 0.82281 0.97946 1.44978 1.45662 1.07438 1.10208 1.22306 1.05261 0.81354 0.95491 1.23443 0.96477 1.04130 0.97434 1.23462 0.94724 1.02247 1.00876 0.94981 0.88620 0.96623 0.92757 0.79554 0.78206 0.82665 0.87914 0.86928 0.87069 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.95 37.16 0.33 -2.72 16 2 C 0.02 0.44 2.29 -92.92 -0.21 0.23 16 3 H 0.05 1.33 7.10 -51.93 -0.37 0.96 16 4 C -0.51 -14.18 8.32 -34.44 -0.29 -14.46 16 5 H 0.06 1.87 7.14 -52.48 -0.37 1.50 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.43 9.79 5.99 -33.07 -0.20 9.59 16 13 O -0.48 -11.71 14.42 5.44 0.08 -11.63 16 14 C -0.10 -1.95 6.76 -83.70 -0.57 -2.51 16 15 C 0.06 1.03 11.20 -17.00 -0.19 0.84 16 16 N -0.50 -8.69 11.19 -14.10 -0.16 -8.85 16 17 C 0.19 2.73 11.84 -90.62 -1.07 1.66 16 18 N -0.40 -6.61 3.11 -108.76 -0.34 -6.95 16 19 C 0.06 0.83 6.26 -67.92 -0.43 0.40 16 20 C -0.18 -1.61 9.99 -26.69 -0.27 -1.88 16 21 C -0.18 -1.83 10.40 -26.69 -0.28 -2.10 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.19 3.24 7.43 -52.48 -0.39 2.85 16 27 H 0.20 2.02 7.00 -52.49 -0.37 1.65 16 28 H 0.16 2.46 6.61 -51.93 -0.34 2.11 16 29 H 0.10 0.78 6.83 -51.93 -0.35 0.43 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 275.40 15.07 4.15 4.15 Total: -1.00 -31.19 275.40 -7.68 -38.87 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.76 Total: 1.46 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.26 Total: -9.33 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.13 Total: -40.01 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.19 -7.68 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085189862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.142 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds