Wall clock time and date at job start Mon Mar 30 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31191 * 1 3 3 Si 1.86798 * 119.99802 * 2 1 4 4 H 1.48500 * 109.46789 * 270.00014 * 3 2 1 5 5 H 1.48492 * 109.47186 * 29.99884 * 3 2 1 6 6 H 1.48498 * 109.46923 * 150.00290 * 3 2 1 7 7 C 1.39176 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99959 * 199.53736 * 7 2 1 9 9 N 1.36991 * 119.99924 * 19.53493 * 7 2 1 10 10 C 1.34274 * 119.24861 * 42.52146 * 9 7 2 11 11 O 1.22043 * 120.10354 * 359.97406 * 10 9 7 12 12 C 1.40476 * 119.78376 * 180.24088 * 10 9 7 13 13 C 1.36126 * 119.01785 * 359.67070 * 12 10 9 14 14 C 1.41035 * 119.96469 * 0.47532 * 13 12 10 15 15 C 1.34765 * 119.64769 * 359.43851 * 14 13 12 16 16 C 1.50739 * 122.74911 * 180.85090 * 15 14 13 17 17 C 1.52685 * 110.72597 * 342.01542 * 16 15 14 18 18 C 1.53368 * 108.24701 * 50.88421 * 17 16 15 19 19 C 1.50631 * 117.38888 * 179.30548 * 14 13 12 20 20 H 1.09009 * 109.19255 * 282.60047 * 19 14 13 21 21 N 1.46897 * 109.22535 * 41.98084 * 19 14 13 22 22 H 0.96995 * 120.00337 * 359.97438 * 1 2 3 23 23 H 1.08005 * 120.48771 * 179.91876 * 12 10 9 24 24 H 1.08001 * 120.02183 * 180.17559 * 13 12 10 25 25 H 1.08998 * 109.22189 * 102.33341 * 16 15 14 26 26 H 1.08996 * 109.22327 * 221.73253 * 16 15 14 27 27 H 1.09002 * 109.70635 * 170.57117 * 17 16 15 28 28 H 1.09006 * 109.70892 * 291.19327 * 17 16 15 29 29 H 1.08997 * 109.71405 * 50.63307 * 18 17 16 30 30 H 1.08995 * 109.71995 * 171.27990 * 18 17 16 31 31 H 1.00900 * 111.00287 * 301.23480 * 21 19 14 32 32 H 1.00895 * 111.00143 * 65.19092 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2458 1.6177 0.0000 4 1 2.4933 2.0464 -1.4001 5 1 1.4433 2.6526 0.7000 6 1 3.5434 1.4402 0.7000 7 6 2.0078 -1.2053 0.0005 8 1 3.0411 -1.2321 0.3133 9 7 1.3819 -2.3577 -0.3957 10 6 0.5853 -2.3334 -1.4762 11 8 0.4237 -1.2936 -2.0944 12 6 -0.0660 -3.5075 -1.8895 13 6 0.1311 -4.6551 -1.1844 14 6 0.9711 -4.6503 -0.0515 15 6 1.5835 -3.5086 0.3195 16 6 2.5097 -3.4285 1.5061 17 6 2.3025 -4.6226 2.4349 18 6 2.3695 -5.9029 1.5932 19 6 1.1354 -5.9484 0.6948 20 1 0.2513 -6.1236 1.3081 21 7 1.2798 -7.0463 -0.2703 22 1 -0.4850 0.8400 0.0004 23 1 -0.7104 -3.5006 -2.7562 24 1 -0.3593 -5.5677 -1.4894 25 1 3.5418 -3.4210 1.1559 26 1 2.3104 -2.5084 2.0554 27 1 3.0861 -4.6393 3.1924 28 1 1.3271 -4.5494 2.9158 29 1 3.2705 -5.8931 0.9799 30 1 2.3796 -6.7738 2.2485 31 1 0.4768 -7.1008 -0.8789 32 1 2.1313 -6.9499 -0.8030 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088023795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:03 Heat of formation + Delta-G solvation = -32.305674 kcal Electronic energy + Delta-G solvation = -16994.265221 eV Core-core repulsion = 14339.577519 eV Total energy + Delta-G solvation = -2654.687702 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.11824 -39.08712 -36.62275 -35.62713 -34.52449 -32.84012 -29.98184 -28.63031 -27.55419 -24.41845 -23.72400 -22.91898 -20.69920 -19.61956 -18.26682 -17.30749 -16.98771 -16.73631 -16.18013 -15.86930 -15.40455 -15.28422 -14.71408 -14.31305 -13.82231 -13.75143 -13.41321 -13.25407 -13.10606 -12.93882 -12.78884 -12.19588 -11.95394 -11.63107 -11.49040 -11.25892 -11.08701 -10.63703 -10.07061 -9.66276 -8.72173 -8.35901 -6.47360 0.35809 1.27109 1.31002 1.40355 1.45984 2.12609 2.75266 2.88815 3.36165 3.77430 3.83054 3.97763 4.20688 4.31149 4.32793 4.47918 4.56079 4.72874 4.81949 4.97195 5.09141 5.14407 5.17557 5.21941 5.35735 5.52914 5.53637 5.65054 5.80406 5.93284 6.33039 6.56077 6.68902 6.83537 7.16018 7.96374 8.45959 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.032822 B = 0.009899 C = 0.008036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.878286 B = 2827.960497 C = 3483.364043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.031 3.969 3 Si 0.991 3.009 4 H -0.287 1.287 5 H -0.271 1.271 6 H -0.235 1.235 7 C -0.403 4.403 8 H 0.117 0.883 9 N -0.323 5.323 10 C 0.458 3.542 11 O -0.615 6.615 12 C -0.304 4.304 13 C -0.028 4.028 14 C -0.268 4.268 15 C 0.140 3.860 16 C -0.073 4.073 17 C -0.105 4.105 18 C -0.104 4.104 19 C 0.165 3.835 20 H 0.081 0.919 21 N -0.833 5.833 22 H 0.275 0.725 23 H 0.124 0.876 24 H 0.149 0.851 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.343 0.657 32 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -11.036 5.907 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.214 1.214 5 H -0.196 1.196 6 H -0.158 1.158 7 C -0.529 4.529 8 H 0.135 0.865 9 N -0.015 5.015 10 C 0.264 3.736 11 O -0.504 6.504 12 C -0.327 4.327 13 C -0.051 4.051 14 C -0.274 4.274 15 C 0.024 3.976 16 C -0.111 4.111 17 C -0.143 4.143 18 C -0.141 4.141 19 C 0.053 3.947 20 H 0.099 0.901 21 N -0.362 5.362 22 H 0.084 0.916 23 H 0.142 0.858 24 H 0.167 0.833 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.156 0.844 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.088 -10.724 6.168 13.377 hybrid contribution -0.386 2.108 -1.463 2.594 sum 4.702 -8.616 4.706 10.885 Atomic orbital electron populations 1.69889 1.09194 1.29672 1.38286 1.26441 0.95561 1.04064 0.92052 0.85020 0.79492 0.76107 0.78181 1.21385 1.19596 1.15796 1.19981 0.97695 0.85307 1.49933 0.86504 1.41741 1.32636 1.08541 1.18584 1.17458 0.84224 0.90390 0.81497 1.90671 1.66812 1.35489 1.57387 1.21772 1.10038 0.93944 1.06934 1.21290 0.93916 0.97186 0.92719 1.19935 1.07274 0.97370 1.02850 1.21169 0.97182 0.86489 0.92729 1.20579 0.97036 1.00933 0.92508 1.21520 1.03129 0.92452 0.97206 1.21539 0.96728 0.97975 0.97896 1.19910 0.99341 0.83048 0.92433 0.90074 1.59242 1.08326 1.45000 1.23589 0.91575 0.85819 0.83303 0.89766 0.90866 0.88349 0.91841 0.91661 0.89025 0.84357 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -51.34 11.62 21.69 0.25 -51.09 16 2 C 0.03 1.73 4.29 85.01 0.36 2.09 16 3 Si 0.99 43.46 29.60 68.60 2.03 45.49 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 7 C -0.40 -21.94 7.65 84.11 0.64 -21.30 16 8 H 0.12 5.75 7.37 -2.91 -0.02 5.73 16 9 N -0.32 -17.26 2.66 -463.57 -1.24 -18.50 16 10 C 0.46 26.81 6.68 84.87 0.57 27.37 16 11 O -0.61 -41.47 14.62 -5.45 -0.08 -41.55 16 12 C -0.30 -14.67 10.00 22.32 0.22 -14.45 16 13 C -0.03 -1.05 9.20 22.46 0.21 -0.84 16 14 C -0.27 -9.67 5.53 -20.00 -0.11 -9.78 16 15 C 0.14 5.93 6.51 40.97 0.27 6.20 16 16 C -0.07 -2.44 4.62 29.76 0.14 -2.30 16 17 C -0.10 -2.52 5.99 30.61 0.18 -2.33 16 18 C -0.10 -2.30 5.53 30.62 0.17 -2.13 16 19 C 0.17 4.33 3.28 44.05 0.14 4.48 16 20 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 21 N -0.83 -18.50 9.07 -172.29 -1.56 -20.06 16 22 H 0.27 15.84 8.30 -92.71 -0.77 15.07 16 23 H 0.12 5.68 8.06 -2.91 -0.02 5.66 16 24 H 0.15 4.22 6.49 -2.91 -0.02 4.20 16 25 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.07 2.73 7.22 -2.39 -0.02 2.71 16 27 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.59 8.11 -2.38 -0.02 1.57 16 29 H 0.06 1.44 8.08 -2.39 -0.02 1.42 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.34 7.07 7.12 -89.69 -0.64 6.43 16 32 H 0.34 7.34 8.96 -89.70 -0.80 6.54 16 Total: -1.00 -74.70 260.44 1.91 -72.79 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.29 Total: 25.91 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 2.80 Total: -13.00 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -2.55 Total: -89.65 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.08 Total: -41.55 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.70 1.91 -72.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088023795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.482 kcal (2) G-P(sol) polarization free energy of solvation -74.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds