Wall clock time and date at job start Mon Mar 30 2020 03:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 120.00185 * 2 1 4 4 N 1.34784 * 119.99612 * 179.97438 * 2 1 3 5 5 C 1.39925 * 119.99658 * 185.03293 * 4 2 1 6 6 C 1.38873 * 120.07378 * 32.09337 * 5 4 2 7 7 C 1.38108 * 119.93335 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.06806 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.92788 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46955 * 19.99884 * 9 8 7 11 11 N 1.46905 * 109.46922 * 140.00128 * 9 8 7 12 12 C 1.50697 * 109.46916 * 260.00031 * 9 8 7 13 13 H 1.07996 * 120.00392 * 354.41001 * 12 9 8 14 14 C 1.37882 * 119.99730 * 174.41272 * 12 9 8 15 15 N 1.31511 * 119.99925 * 0.91684 * 14 12 9 16 16 Si 1.86797 * 119.99756 * 180.91678 * 14 12 9 17 17 H 1.48502 * 109.47413 * 265.00583 * 16 14 12 18 18 H 1.48502 * 109.47184 * 25.00819 * 16 14 12 19 19 H 1.48509 * 109.47077 * 145.00524 * 16 14 12 20 20 C 1.38281 * 120.13911 * 0.25324 * 8 7 6 21 21 C 1.38108 * 120.07465 * 359.49080 * 20 8 7 22 22 H 1.09001 * 109.47245 * 240.00368 * 1 2 3 23 23 H 1.08997 * 109.46664 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46943 * 120.00264 * 1 2 3 25 25 H 0.96999 * 120.00171 * 5.03300 * 4 2 1 26 26 H 1.08003 * 120.03374 * 0.02562 * 6 5 4 27 27 H 1.07992 * 119.96670 * 180.02562 * 7 6 5 28 28 H 1.00896 * 111.00130 * 59.54164 * 11 9 8 29 29 H 1.00898 * 110.99577 * 183.49719 * 11 9 8 30 30 H 0.97004 * 119.99899 * 180.02562 * 15 14 12 31 31 H 1.08006 * 119.95956 * 179.74381 * 20 8 7 32 32 H 1.07995 * 120.03919 * 180.24768 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5761 -1.1696 0.1068 6 6 4.2198 -0.1813 0.8400 7 6 5.5970 -0.1861 0.9425 8 6 6.3351 -1.1733 0.3157 9 6 7.8378 -1.1751 0.4292 10 1 8.1377 -0.5803 1.2920 11 7 8.3146 -2.5546 0.5958 12 6 8.4367 -0.5841 -0.8210 13 1 7.8004 -0.3249 -1.6542 14 6 9.7971 -0.3743 -0.9011 15 7 10.5741 -0.7067 0.1066 16 14 10.5364 0.3820 -2.4408 17 1 11.0074 -0.6974 -3.3454 18 1 9.5071 1.1962 -3.1356 19 1 11.6825 1.2485 -2.0654 20 6 5.6975 -2.1555 -0.4198 21 6 4.3202 -2.1594 -0.5219 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3632 1.0277 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 1.6987 -2.0057 -0.0728 26 1 3.6439 0.5903 1.3294 27 1 6.0981 0.5820 1.5129 28 1 8.0425 -3.1284 -0.1883 29 1 9.3142 -2.5778 0.7313 30 1 11.5312 -0.5588 0.0504 31 1 6.2771 -2.9228 -0.9116 32 1 3.8226 -2.9290 -1.0932 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095765533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:14 Heat of formation + Delta-G solvation = -18.121455 kcal Electronic energy + Delta-G solvation = -15809.107234 eV Core-core repulsion = 13155.034606 eV Total energy + Delta-G solvation = -2654.072628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19616 -38.17919 -35.26054 -33.76157 -31.47253 -30.35504 -30.18520 -27.92366 -25.75817 -23.13013 -22.11698 -20.71057 -19.67269 -17.48653 -16.79960 -16.47030 -15.45324 -15.41237 -14.38255 -14.21139 -14.03227 -13.56968 -13.00767 -12.98107 -12.78390 -12.60922 -12.27492 -11.96539 -11.54769 -11.31310 -10.96121 -10.71946 -10.47042 -10.16826 -9.84372 -9.61673 -9.44923 -8.64383 -8.25153 -7.49634 -7.12929 -6.07437 -4.23218 1.88238 2.10489 2.76012 3.22099 3.23798 3.31717 3.37427 4.32721 4.55592 4.69449 5.04479 5.14873 5.16406 5.45086 5.56828 5.63924 5.92856 6.05824 6.10670 6.22883 6.61643 6.68157 6.85208 6.91302 7.17150 7.23541 7.55369 7.66915 7.76385 7.84638 8.13322 8.21893 8.70071 8.90463 9.08415 9.47418 10.90920 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.039679 B = 0.005703 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.496445 B = 4908.686278 C = 5195.206033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.503 3.497 3 O -0.527 6.527 4 N -0.670 5.670 5 C 0.105 3.895 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.032 4.032 9 C 0.238 3.762 10 H 0.051 0.949 11 N -0.849 5.849 12 C -0.543 4.543 13 H 0.056 0.944 14 C 0.067 3.933 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.281 1.281 18 H -0.273 1.273 19 H -0.285 1.285 20 C -0.094 4.094 21 C -0.147 4.147 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.405 0.595 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.311 0.689 29 H 0.351 0.649 30 H 0.265 0.735 31 H 0.121 0.879 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -3.454 -0.072 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.290 3.710 3 O -0.403 6.403 4 N -0.315 5.315 5 C 0.013 3.987 6 C -0.140 4.140 7 C -0.127 4.127 8 C -0.033 4.033 9 C 0.129 3.871 10 H 0.069 0.931 11 N -0.378 5.378 12 C -0.583 4.583 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.531 5.531 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.198 1.198 19 H -0.210 1.210 20 C -0.113 4.113 21 C -0.167 4.167 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.240 0.760 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.166 0.834 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.215 -2.673 0.677 16.448 hybrid contribution 0.788 0.227 -1.865 2.038 sum -15.427 -2.446 -1.188 15.665 Atomic orbital electron populations 1.21914 0.91377 1.05634 1.04217 1.20919 0.90627 0.83504 0.75915 1.90758 1.70512 1.31274 1.47723 1.43489 1.05806 1.09235 1.73008 1.17560 0.81698 0.98971 1.00516 1.20965 0.94755 0.98890 0.99369 1.20942 0.92661 0.98816 1.00272 1.20495 0.97979 0.92183 0.92684 1.18027 0.84584 0.88078 0.96438 0.93129 1.59539 1.20839 1.11758 1.45654 1.21830 0.92392 1.42834 1.01252 0.92579 1.25026 0.97173 0.94932 0.96464 1.69825 1.04952 1.47778 1.30520 0.86524 0.78816 0.79300 0.83065 1.20696 1.19779 1.21039 1.20725 0.92582 0.99061 0.98959 1.20730 0.94413 0.99888 1.01702 0.89296 0.88853 0.89420 0.75993 0.85801 0.86215 0.87950 0.83421 0.92546 0.86086 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.32 36.01 0.37 -0.89 16 2 C 0.50 6.58 7.69 -10.98 -0.08 6.50 16 3 O -0.53 -9.57 14.68 5.56 0.08 -9.48 16 4 N -0.67 -8.44 5.35 -9.86 -0.05 -8.49 16 5 C 0.11 1.78 6.30 -83.69 -0.53 1.25 16 6 C -0.12 -2.29 8.66 -39.39 -0.34 -2.63 16 7 C -0.11 -2.26 9.66 -39.61 -0.38 -2.64 16 8 C -0.03 -0.72 4.90 -104.59 -0.51 -1.23 16 9 C 0.24 6.00 2.85 -70.01 -0.20 5.80 16 10 H 0.05 1.40 8.00 -51.93 -0.42 0.99 16 11 N -0.85 -20.09 9.05 -6.65 -0.06 -20.15 16 12 C -0.54 -14.81 8.66 -34.44 -0.30 -15.11 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 15 N -0.89 -24.80 11.88 55.43 0.66 -24.14 16 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.09 -1.85 9.28 -39.61 -0.37 -2.22 16 21 C -0.15 -2.46 9.96 -39.39 -0.39 -2.86 16 22 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.41 3.43 8.81 -40.82 -0.36 3.07 16 26 H 0.12 2.35 6.32 -52.48 -0.33 2.02 16 27 H 0.12 2.44 8.03 -52.49 -0.42 2.02 16 28 H 0.31 6.87 7.32 -39.29 -0.29 6.58 16 29 H 0.35 8.87 7.48 -39.29 -0.29 8.58 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.12 2.28 6.66 -52.48 -0.35 1.93 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 276.64 15.07 4.17 4.17 Total: -1.00 -31.58 276.64 -6.75 -38.33 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -3.69 Total: 15.85 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.83 Total: -12.31 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.55 Total: -52.79 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.58 -6.75 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095765533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.205 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds