Wall clock time and date at job start Mon Mar 30 2020 03:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 120.00185 * 2 1 4 4 N 1.34784 * 119.99612 * 179.97438 * 2 1 3 5 5 C 1.39925 * 119.99658 * 185.03293 * 4 2 1 6 6 C 1.38873 * 120.07378 * 32.09337 * 5 4 2 7 7 C 1.38108 * 119.93335 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.06806 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.92788 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46955 * 19.99884 * 9 8 7 11 11 N 1.46905 * 109.46922 * 140.00128 * 9 8 7 12 12 C 1.50697 * 109.46916 * 260.00031 * 9 8 7 13 13 H 1.07996 * 120.00392 * 354.41001 * 12 9 8 14 14 C 1.37882 * 119.99730 * 174.41272 * 12 9 8 15 15 N 1.31511 * 119.99925 * 0.91684 * 14 12 9 16 16 Si 1.86797 * 119.99756 * 180.91678 * 14 12 9 17 17 H 1.48502 * 109.47413 * 265.00583 * 16 14 12 18 18 H 1.48502 * 109.47184 * 25.00819 * 16 14 12 19 19 H 1.48509 * 109.47077 * 145.00524 * 16 14 12 20 20 C 1.38281 * 120.13911 * 0.25324 * 8 7 6 21 21 C 1.38108 * 120.07465 * 359.49080 * 20 8 7 22 22 H 1.09001 * 109.47245 * 240.00368 * 1 2 3 23 23 H 1.08997 * 109.46664 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46943 * 120.00264 * 1 2 3 25 25 H 0.96999 * 120.00171 * 5.03300 * 4 2 1 26 26 H 1.08003 * 120.03374 * 0.02562 * 6 5 4 27 27 H 1.07992 * 119.96670 * 180.02562 * 7 6 5 28 28 H 1.00896 * 111.00130 * 59.54164 * 11 9 8 29 29 H 1.00898 * 110.99577 * 183.49719 * 11 9 8 30 30 H 0.97004 * 119.99899 * 180.02562 * 15 14 12 31 31 H 1.08006 * 119.95956 * 179.74381 * 20 8 7 32 32 H 1.07995 * 120.03919 * 180.24768 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5761 -1.1696 0.1068 6 6 4.2198 -0.1813 0.8400 7 6 5.5970 -0.1861 0.9425 8 6 6.3351 -1.1733 0.3157 9 6 7.8378 -1.1751 0.4292 10 1 8.1377 -0.5803 1.2920 11 7 8.3146 -2.5546 0.5958 12 6 8.4367 -0.5841 -0.8210 13 1 7.8004 -0.3249 -1.6542 14 6 9.7971 -0.3743 -0.9011 15 7 10.5741 -0.7067 0.1066 16 14 10.5364 0.3820 -2.4408 17 1 11.0074 -0.6974 -3.3454 18 1 9.5071 1.1962 -3.1356 19 1 11.6825 1.2485 -2.0654 20 6 5.6975 -2.1555 -0.4198 21 6 4.3202 -2.1594 -0.5219 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3632 1.0277 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 1.6987 -2.0057 -0.0728 26 1 3.6439 0.5903 1.3294 27 1 6.0981 0.5820 1.5129 28 1 8.0425 -3.1284 -0.1883 29 1 9.3142 -2.5778 0.7313 30 1 11.5312 -0.5588 0.0504 31 1 6.2771 -2.9228 -0.9116 32 1 3.8226 -2.9290 -1.0932 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095765533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:14 Heat of formation + Delta-G solvation = -41.375783 kcal Electronic energy + Delta-G solvation = -15810.115618 eV Core-core repulsion = 13155.034606 eV Total energy + Delta-G solvation = -2655.081011 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.41264 -39.62027 -36.87246 -35.32422 -33.35166 -31.80521 -31.30496 -29.30461 -27.72120 -24.73796 -23.63432 -22.10191 -21.12222 -18.74106 -18.58442 -17.87373 -17.21724 -16.53806 -16.26531 -15.55565 -15.46598 -14.97071 -14.87312 -14.42756 -13.99266 -13.81287 -13.40272 -13.27622 -13.20640 -12.95962 -12.84026 -12.60158 -12.14560 -11.88434 -11.50642 -11.19287 -10.82285 -10.71964 -9.75100 -9.26434 -8.83039 -8.12104 -6.38694 0.45735 0.58835 1.34991 1.37716 1.48316 1.67050 2.20466 2.35866 3.00055 3.07636 3.83720 4.09005 4.15403 4.24337 4.50748 4.60547 4.66278 4.69741 4.75352 4.80603 5.11706 5.14379 5.30674 5.42905 5.52812 5.59561 5.67431 5.96102 6.14153 6.23075 6.54096 6.64957 6.86688 7.11077 7.22854 7.36700 8.81791 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.039679 B = 0.005703 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.496445 B = 4908.686278 C = 5195.206033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.496 3.504 3 O -0.585 6.585 4 N -0.657 5.657 5 C 0.117 3.883 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.065 4.065 9 C 0.244 3.756 10 H 0.010 0.990 11 N -0.839 5.839 12 C -0.559 4.559 13 H 0.044 0.956 14 C 0.023 3.977 15 N -0.914 5.914 16 Si 0.958 3.042 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.281 1.281 20 C -0.100 4.100 21 C -0.133 4.133 22 H 0.118 0.882 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.430 0.570 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.321 0.679 29 H 0.341 0.659 30 H 0.268 0.732 31 H 0.127 0.873 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 -4.716 -1.460 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.287 3.713 3 O -0.464 6.464 4 N -0.304 5.304 5 C 0.023 3.977 6 C -0.150 4.150 7 C -0.145 4.145 8 C -0.066 4.066 9 C 0.134 3.866 10 H 0.028 0.972 11 N -0.367 5.367 12 C -0.598 4.598 13 H 0.062 0.938 14 C -0.177 4.177 15 N -0.554 5.554 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.206 1.206 20 C -0.119 4.119 21 C -0.153 4.153 22 H 0.136 0.864 23 H 0.109 0.891 24 H 0.137 0.863 25 H 0.269 0.731 26 H 0.139 0.861 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.154 0.846 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.750 -3.984 -0.712 19.182 hybrid contribution 1.445 0.613 -1.403 2.105 sum -17.305 -3.371 -2.115 17.757 Atomic orbital electron populations 1.21938 0.86256 1.06505 1.07037 1.22068 0.92908 0.82408 0.73881 1.90749 1.72097 1.33338 1.50215 1.43477 1.03914 1.10734 1.72243 1.17680 0.84045 0.97547 0.98463 1.20987 0.93883 0.99866 1.00261 1.20919 0.93775 0.98790 1.00993 1.20292 0.96315 0.94388 0.95593 1.17778 0.86934 0.87897 0.93996 0.97175 1.59476 1.19881 1.11241 1.46074 1.22015 0.92761 1.43368 1.01694 0.93777 1.25741 0.97505 0.95266 0.99222 1.69921 1.05202 1.48268 1.31961 0.85554 0.77771 0.78607 0.79732 1.19535 1.20230 1.20599 1.20855 0.94191 0.98361 0.98524 1.21066 0.93149 1.00356 1.00769 0.86378 0.89081 0.86323 0.73087 0.86093 0.87474 0.86815 0.84610 0.92321 0.85488 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.32 71.24 0.74 -0.93 16 2 C 0.50 11.69 7.69 87.66 0.67 12.36 16 3 O -0.58 -20.82 14.68 -3.04 -0.04 -20.86 16 4 N -0.66 -14.26 5.35 -303.49 -1.62 -15.88 16 5 C 0.12 3.71 6.30 38.15 0.24 3.95 16 6 C -0.13 -5.00 8.66 22.39 0.19 -4.81 16 7 C -0.13 -5.51 9.66 22.25 0.21 -5.29 16 8 C -0.06 -2.96 4.90 -19.84 -0.10 -3.05 16 9 C 0.24 12.81 2.85 43.42 0.12 12.93 16 10 H 0.01 0.61 8.00 -2.39 -0.02 0.59 16 11 N -0.84 -40.66 9.05 -174.94 -1.58 -42.25 16 12 C -0.56 -31.31 8.66 25.60 0.22 -31.09 16 13 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 14 C 0.02 1.28 5.39 84.66 0.46 1.74 16 15 N -0.91 -51.88 11.88 21.45 0.25 -51.63 16 16 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 C -0.10 -3.85 9.28 22.25 0.21 -3.64 16 21 C -0.13 -4.08 9.96 22.39 0.22 -3.86 16 22 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 24 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.43 5.14 8.81 -92.71 -0.82 4.32 16 26 H 0.12 4.70 6.32 -2.91 -0.02 4.68 16 27 H 0.11 4.76 8.03 -2.91 -0.02 4.73 16 28 H 0.32 14.29 7.32 -89.70 -0.66 13.63 16 29 H 0.34 17.70 7.48 -89.70 -0.67 17.03 16 30 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 31 H 0.13 4.63 6.66 -2.91 -0.02 4.61 16 32 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -71.40 276.64 1.25 -70.16 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.98 Total: 36.10 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.19 Total: -21.69 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -2.95 Total: -109.75 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.04 Total: -20.86 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.40 1.25 -70.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095765533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.784 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds