Wall clock time and date at job start Mon Mar 30 2020 03:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 120.00326 * 2 1 4 4 N 1.34783 * 119.99791 * 179.97438 * 2 1 3 5 5 C 1.39930 * 119.99975 * 185.57550 * 4 2 1 6 6 C 1.38873 * 120.06993 * 34.62613 * 5 4 2 7 7 C 1.38111 * 119.92913 * 179.97438 * 6 5 4 8 8 C 1.38275 * 120.07097 * 359.97123 * 7 6 5 9 9 C 1.50698 * 119.93061 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.46994 * 340.00715 * 9 8 7 11 11 N 1.46898 * 109.47286 * 220.00478 * 9 8 7 12 12 C 1.50697 * 109.46926 * 100.00123 * 9 8 7 13 13 H 1.08004 * 120.00142 * 34.79154 * 12 9 8 14 14 C 1.37876 * 120.00095 * 214.78531 * 12 9 8 15 15 N 1.31510 * 120.00136 * 355.03122 * 14 12 9 16 16 Si 1.86808 * 119.99822 * 174.75921 * 14 12 9 17 17 H 1.48500 * 109.47136 * 60.00168 * 16 14 12 18 18 H 1.48504 * 109.46749 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46828 * 299.99915 * 16 14 12 20 20 C 1.38280 * 120.14158 * 0.28513 * 8 7 6 21 21 C 1.38114 * 120.06877 * 359.48590 * 20 8 7 22 22 H 1.08998 * 109.47180 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46490 * 300.00200 * 1 2 3 24 24 H 1.08991 * 109.47124 * 60.00021 * 1 2 3 25 25 H 0.96998 * 120.00471 * 5.57892 * 4 2 1 26 26 H 1.08004 * 120.03297 * 359.95578 * 6 5 4 27 27 H 1.08002 * 119.95854 * 180.02562 * 7 6 5 28 28 H 1.00899 * 110.99852 * 171.81091 * 11 9 8 29 29 H 1.00900 * 111.00169 * 295.76639 * 11 9 8 30 30 H 0.96999 * 120.00177 * 4.67352 * 15 14 12 31 31 H 1.08001 * 119.96596 * 179.72164 * 20 8 7 32 32 H 1.08007 * 120.03286 * 180.25530 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5752 -1.1701 0.1183 6 6 4.2091 -0.2166 0.9041 7 6 5.5855 -0.2225 1.0187 8 6 6.3321 -1.1767 0.3525 9 6 7.8337 -1.1805 0.4802 10 1 8.1721 -0.2006 0.8167 11 7 8.4354 -1.4848 -0.8249 12 6 8.2500 -2.2269 1.4815 13 1 7.6947 -3.1499 1.5605 14 6 9.3397 -2.0061 2.2968 15 7 10.0742 -0.9273 2.1349 16 14 9.7684 -3.2354 3.6364 17 1 10.0415 -4.5602 3.0235 18 1 10.9746 -2.7705 4.3673 19 1 8.6301 -3.3530 4.5829 20 6 5.7043 -2.1243 -0.4350 21 6 4.3280 -2.1268 -0.5500 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6994 -2.0054 -0.0808 26 1 3.6264 0.5289 1.4248 27 1 6.0789 0.5186 1.6300 28 1 9.4367 -1.3630 -0.7987 29 1 8.1923 -2.4164 -1.1269 30 1 9.8111 -0.2539 1.4881 31 1 6.2906 -2.8656 -0.9577 32 1 3.8380 -2.8697 -1.1619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095778632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:17 Heat of formation + Delta-G solvation = -44.060330 kcal Electronic energy + Delta-G solvation = -15829.405124 eV Core-core repulsion = 13174.207702 eV Total energy + Delta-G solvation = -2655.197422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44976 -39.70961 -37.09054 -35.42654 -33.43184 -31.87520 -31.40317 -29.39904 -27.24356 -24.83565 -23.71239 -22.33907 -21.26001 -19.04994 -18.75402 -17.95628 -17.25616 -16.59655 -15.75072 -15.64403 -15.60234 -15.19398 -14.95072 -14.55829 -14.25206 -14.09925 -13.70580 -13.35067 -13.09403 -12.98978 -12.62337 -12.19265 -12.01677 -11.62260 -11.55151 -11.18071 -10.93779 -10.70046 -9.83322 -9.39918 -8.95931 -8.53527 -6.43324 0.39099 0.51087 1.50309 1.57012 1.62658 1.76925 2.17395 2.51118 2.92781 3.14972 3.80603 3.98715 4.02381 4.08650 4.44307 4.49386 4.57680 4.60551 4.66523 4.71383 4.92534 5.06920 5.15501 5.35469 5.44223 5.56659 5.75718 5.97838 6.05522 6.13488 6.49550 6.50517 6.53546 6.84124 7.18937 7.37516 8.68082 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.040816 B = 0.005619 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.846430 B = 4982.297688 C = 5107.227341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.498 3.502 3 O -0.586 6.586 4 N -0.657 5.657 5 C 0.116 3.884 6 C -0.125 4.125 7 C -0.129 4.129 8 C -0.058 4.058 9 C 0.221 3.779 10 H 0.019 0.981 11 N -0.841 5.841 12 C -0.625 4.625 13 H 0.046 0.954 14 C -0.021 4.021 15 N -0.931 5.931 16 Si 1.114 2.886 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.103 4.103 21 C -0.130 4.130 22 H 0.113 0.887 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.429 0.571 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.326 0.674 29 H 0.331 0.669 30 H 0.258 0.742 31 H 0.128 0.872 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.826 -5.089 -4.190 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.288 3.712 3 O -0.465 6.465 4 N -0.304 5.304 5 C 0.022 3.978 6 C -0.145 4.145 7 C -0.148 4.148 8 C -0.060 4.060 9 C 0.112 3.888 10 H 0.037 0.963 11 N -0.367 5.367 12 C -0.664 4.664 13 H 0.064 0.936 14 C -0.221 4.221 15 N -0.568 5.568 16 Si 0.936 3.064 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.122 4.122 21 C -0.150 4.150 22 H 0.132 0.868 23 H 0.123 0.877 24 H 0.125 0.875 25 H 0.269 0.731 26 H 0.136 0.864 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.838 -4.055 -3.304 18.589 hybrid contribution -0.235 -0.244 -0.501 0.604 sum -18.073 -4.299 -3.805 18.963 Atomic orbital electron populations 1.21881 0.86246 1.07049 1.06332 1.22074 0.92896 0.82397 0.73786 1.90750 1.72047 1.33273 1.50447 1.43582 1.03937 1.10767 1.72145 1.17647 0.84211 0.97934 0.98017 1.20911 0.93818 1.00093 0.99694 1.20844 0.93942 0.99261 1.00794 1.20186 0.96307 0.94323 0.95150 1.18046 0.88004 0.95323 0.87448 0.96292 1.59489 1.14677 1.32416 1.30134 1.22773 1.16358 1.04130 1.23159 0.93586 1.27254 0.93075 1.00958 1.00799 1.70955 1.38232 1.10292 1.37336 0.82967 0.76259 0.73550 0.73659 1.19312 1.21063 1.20144 1.20833 0.94321 0.98429 0.98592 1.21100 0.93036 1.00521 1.00343 0.86838 0.87655 0.87483 0.73087 0.86355 0.88125 0.86408 0.85756 0.93065 0.85434 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.39 71.24 0.74 -0.91 16 2 C 0.50 11.74 7.66 87.66 0.67 12.42 16 3 O -0.59 -20.76 14.89 -3.04 -0.05 -20.81 16 4 N -0.66 -14.46 5.34 -303.50 -1.62 -16.08 16 5 C 0.12 3.72 6.25 38.15 0.24 3.96 16 6 C -0.12 -4.90 8.65 22.39 0.19 -4.71 16 7 C -0.13 -5.79 9.66 22.25 0.21 -5.58 16 8 C -0.06 -2.67 4.94 -19.85 -0.10 -2.77 16 9 C 0.22 11.38 2.85 43.42 0.12 11.50 16 10 H 0.02 1.10 6.26 -2.39 -0.01 1.09 16 11 N -0.84 -38.60 8.99 -174.97 -1.57 -40.17 16 12 C -0.62 -34.25 8.54 25.60 0.22 -34.03 16 13 H 0.05 2.52 7.82 -2.91 -0.02 2.49 16 14 C -0.02 -1.16 5.45 84.66 0.46 -0.70 16 15 N -0.93 -55.81 13.63 21.45 0.29 -55.52 16 16 Si 1.11 49.50 29.91 68.60 2.05 51.55 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.10 -3.93 9.30 22.25 0.21 -3.72 16 21 C -0.13 -3.99 9.97 22.39 0.22 -3.77 16 22 H 0.11 0.38 7.92 -2.39 -0.02 0.36 16 23 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.43 5.31 8.67 -92.71 -0.80 4.50 16 26 H 0.12 4.66 6.52 -2.91 -0.02 4.64 16 27 H 0.10 4.67 8.03 -2.91 -0.02 4.64 16 28 H 0.33 15.39 9.08 -89.69 -0.81 14.57 16 29 H 0.33 13.89 7.47 -89.69 -0.67 13.22 16 30 H 0.26 15.76 6.55 -92.71 -0.61 15.16 16 31 H 0.13 4.56 6.74 -2.91 -0.02 4.54 16 32 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -73.42 277.13 1.35 -72.07 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.95 Total: 37.28 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.19 Total: -28.32 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -2.90 Total: -111.77 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Total: -73.42 1.35 -72.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095778632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.008 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds