Wall clock time and date at job start Mon Mar 30 2020 03:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21273 * 119.99797 * 2 1 4 4 C 1.47125 * 120.00038 * 180.27581 * 2 1 3 5 5 C 1.39812 * 119.65702 * 179.44974 * 4 2 1 6 6 C 1.38139 * 119.14623 * 179.77099 * 5 4 2 7 7 C 1.39507 * 118.44123 * 0.49411 * 6 5 4 8 8 N 1.38909 * 120.38191 * 179.76593 * 7 6 5 9 9 C 1.46492 * 120.00260 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.46970 * 90.00559 * 10 8 7 12 12 H 1.08008 * 120.00135 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00042 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00075 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00167 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46960 * 59.99580 * 15 13 11 17 17 H 1.48496 * 109.47532 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46919 * 300.00117 * 15 13 11 19 19 C 1.39616 * 119.23040 * 359.75401 * 7 6 5 20 20 N 1.31213 * 120.79713 * 359.97438 * 19 7 6 21 21 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47174 * 119.99264 * 1 2 3 23 23 H 1.08998 * 109.47585 * 239.99966 * 1 2 3 24 24 H 1.08003 * 120.42565 * 0.02562 * 5 4 2 25 25 H 1.07999 * 120.78254 * 180.24393 * 6 5 4 26 26 H 1.09003 * 109.47662 * 89.99277 * 9 8 7 27 27 H 1.09000 * 109.47483 * 209.99531 * 9 8 7 28 28 H 1.09006 * 109.47169 * 329.99580 * 9 8 7 29 29 H 1.08996 * 109.46831 * 210.00768 * 10 8 7 30 30 H 1.08997 * 109.47086 * 330.00288 * 10 8 7 31 31 H 0.96994 * 119.99839 * 180.02562 * 14 13 11 32 32 H 1.08007 * 119.60673 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2426 -1.2741 -0.0061 5 6 3.6407 -1.2657 -0.0178 6 6 4.3207 -2.4681 -0.0186 7 6 3.5801 -3.6503 -0.0183 8 7 4.2226 -4.8819 -0.0241 9 6 5.6861 -4.9445 -0.0310 10 6 3.4364 -6.1182 -0.0232 11 6 3.1604 -6.5389 -1.4436 12 1 3.5330 -5.9447 -2.2650 13 6 2.4315 -7.6820 -1.6948 14 7 1.9774 -8.4054 -0.6947 15 14 2.0887 -8.2032 -3.4555 16 1 3.3741 -8.4348 -4.1623 17 1 1.2920 -9.4563 -3.4547 18 1 1.3282 -7.1330 -4.1494 19 6 2.1856 -3.5812 -0.0120 20 7 1.5704 -2.4223 -0.0058 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3634 -0.5137 -0.8901 23 1 -0.3634 -0.5138 0.8899 24 1 4.1820 -0.3311 -0.0218 25 1 5.4004 -2.4924 -0.0235 26 1 6.0540 -4.9622 0.9949 27 1 6.0087 -5.8481 -0.5483 28 1 6.0848 -4.0698 -0.5448 29 1 3.9948 -6.9033 0.4865 30 1 2.4929 -5.9483 0.4954 31 1 1.4649 -9.2097 -0.8714 32 1 1.6062 -4.4927 -0.0122 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134211387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:40 Heat of formation + Delta-G solvation = 0.107819 kcal Electronic energy + Delta-G solvation = -15838.987553 eV Core-core repulsion = 13185.705406 eV Total energy + Delta-G solvation = -2653.282147 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04970 -38.51212 -36.27603 -33.02415 -31.77395 -30.76821 -29.04974 -28.22797 -25.70942 -23.61083 -22.75216 -21.13982 -19.63469 -17.10941 -16.73060 -16.21533 -15.91082 -14.84732 -14.72521 -14.26866 -14.15620 -14.00207 -13.41684 -13.02954 -12.78869 -12.50723 -12.30603 -11.86746 -11.85446 -11.61783 -11.34706 -11.00342 -10.75563 -10.33806 -10.18525 -9.73138 -9.56673 -9.07741 -8.96038 -8.64576 -6.86762 -6.22615 -4.35050 1.15173 1.78210 2.75271 3.20231 3.25596 3.28259 3.72633 4.27087 4.35583 4.40124 4.99728 5.07097 5.25764 5.29839 5.40851 5.55816 5.63301 5.71848 5.79231 5.80320 6.06761 6.11609 6.15910 6.48986 6.55574 6.67692 7.03528 7.08872 7.60002 7.70923 7.82567 7.93581 7.99413 8.49286 8.71684 9.33120 10.80118 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.006476 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.789597 B = 4322.289147 C = 4895.950377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.422 3.578 3 O -0.483 6.483 4 C -0.072 4.072 5 C -0.054 4.054 6 C -0.208 4.208 7 C 0.224 3.776 8 N -0.586 5.586 9 C 0.088 3.912 10 C 0.241 3.759 11 C -0.542 4.542 12 H 0.061 0.939 13 C 0.066 3.934 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.035 3.965 20 N -0.403 5.403 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 8.459 1.964 8.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.302 3.698 3 O -0.359 6.359 4 C -0.207 4.207 5 C -0.075 4.075 6 C -0.237 4.237 7 C 0.108 3.892 8 N -0.287 5.287 9 C -0.056 4.056 10 C 0.122 3.878 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.136 4.136 20 N -0.114 5.114 21 H 0.091 0.909 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.694 8.684 2.020 9.075 hybrid contribution 0.792 -0.702 -1.032 1.478 sum 2.487 7.982 0.989 8.419 Atomic orbital electron populations 1.22044 0.93664 1.03334 1.05104 1.22081 0.91636 0.86464 0.69605 1.90485 1.72576 1.33825 1.39029 1.20997 0.91482 0.93455 1.14732 1.21802 0.94274 0.98158 0.93280 1.20965 0.99986 0.90934 1.11861 1.19311 0.93655 0.86666 0.89522 1.47236 1.05620 1.04472 1.71357 1.21677 0.80548 1.02751 1.00604 1.19524 0.91293 0.79270 0.97728 1.21434 1.35235 1.09300 0.92089 0.92119 1.24943 0.95102 0.95990 0.97679 1.69902 1.35901 1.16058 1.30988 0.86528 0.78498 0.78061 0.84265 1.20172 1.21019 1.19938 1.22703 0.90288 0.95970 1.04648 1.67401 1.40200 0.97526 1.06252 0.90885 0.88850 0.88893 0.85009 0.85068 0.93551 0.90533 0.92165 0.94316 0.94062 0.92285 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.79 36.01 0.35 -1.98 16 2 C 0.42 6.78 7.22 -30.70 -0.22 6.56 16 3 O -0.48 -8.63 17.04 5.56 0.09 -8.53 16 4 C -0.07 -1.26 6.72 -83.15 -0.56 -1.82 16 5 C -0.05 -0.89 9.62 -39.03 -0.38 -1.26 16 6 C -0.21 -3.39 9.28 -39.14 -0.36 -3.76 16 7 C 0.22 4.19 6.57 -83.67 -0.55 3.64 16 8 N -0.59 -11.23 2.97 -180.83 -0.54 -11.77 16 9 C 0.09 1.34 10.20 59.84 0.61 1.95 16 10 C 0.24 5.48 4.91 -5.19 -0.03 5.46 16 11 C -0.54 -13.74 9.39 -34.44 -0.32 -14.06 16 12 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 13 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 15 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.03 0.67 10.37 -17.30 -0.18 0.50 16 20 N -0.40 -7.49 9.77 -9.71 -0.09 -7.58 16 21 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 22 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.13 1.95 7.63 -52.48 -0.40 1.55 16 25 H 0.13 1.81 6.24 -52.49 -0.33 1.48 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.06 0.80 6.22 -51.93 -0.32 0.47 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.04 0.98 6.20 -51.93 -0.32 0.66 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.17 3.52 6.14 -52.48 -0.32 3.20 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -28.00 280.70 -6.09 -34.09 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.77 Total: 0.77 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.73 Total: -3.14 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.10 Total: -42.72 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.00 -6.09 -34.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134211387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.202 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds