Wall clock time and date at job start Mon Mar 30 2020 03:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21273 * 119.99797 * 2 1 4 4 C 1.47125 * 120.00038 * 180.27581 * 2 1 3 5 5 C 1.39812 * 119.65702 * 179.44974 * 4 2 1 6 6 C 1.38139 * 119.14623 * 179.77099 * 5 4 2 7 7 C 1.39507 * 118.44123 * 0.49411 * 6 5 4 8 8 N 1.38909 * 120.38191 * 179.76593 * 7 6 5 9 9 C 1.46492 * 120.00260 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.46970 * 90.00559 * 10 8 7 12 12 H 1.08008 * 120.00135 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00042 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00075 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00167 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46960 * 59.99580 * 15 13 11 17 17 H 1.48496 * 109.47532 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46919 * 300.00117 * 15 13 11 19 19 C 1.39616 * 119.23040 * 359.75401 * 7 6 5 20 20 N 1.31213 * 120.79713 * 359.97438 * 19 7 6 21 21 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47174 * 119.99264 * 1 2 3 23 23 H 1.08998 * 109.47585 * 239.99966 * 1 2 3 24 24 H 1.08003 * 120.42565 * 0.02562 * 5 4 2 25 25 H 1.07999 * 120.78254 * 180.24393 * 6 5 4 26 26 H 1.09003 * 109.47662 * 89.99277 * 9 8 7 27 27 H 1.09000 * 109.47483 * 209.99531 * 9 8 7 28 28 H 1.09006 * 109.47169 * 329.99580 * 9 8 7 29 29 H 1.08996 * 109.46831 * 210.00768 * 10 8 7 30 30 H 1.08997 * 109.47086 * 330.00288 * 10 8 7 31 31 H 0.96994 * 119.99839 * 180.02562 * 14 13 11 32 32 H 1.08007 * 119.60673 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2426 -1.2741 -0.0061 5 6 3.6407 -1.2657 -0.0178 6 6 4.3207 -2.4681 -0.0186 7 6 3.5801 -3.6503 -0.0183 8 7 4.2226 -4.8819 -0.0241 9 6 5.6861 -4.9445 -0.0310 10 6 3.4364 -6.1182 -0.0232 11 6 3.1604 -6.5389 -1.4436 12 1 3.5330 -5.9447 -2.2650 13 6 2.4315 -7.6820 -1.6948 14 7 1.9774 -8.4054 -0.6947 15 14 2.0887 -8.2032 -3.4555 16 1 3.3741 -8.4348 -4.1623 17 1 1.2920 -9.4563 -3.4547 18 1 1.3282 -7.1330 -4.1494 19 6 2.1856 -3.5812 -0.0120 20 7 1.5704 -2.4223 -0.0058 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3634 -0.5137 -0.8901 23 1 -0.3634 -0.5138 0.8899 24 1 4.1820 -0.3311 -0.0218 25 1 5.4004 -2.4924 -0.0235 26 1 6.0540 -4.9622 0.9949 27 1 6.0087 -5.8481 -0.5483 28 1 6.0848 -4.0698 -0.5448 29 1 3.9948 -6.9033 0.4865 30 1 2.4929 -5.9483 0.4954 31 1 1.4649 -9.2097 -0.8714 32 1 1.6062 -4.4927 -0.0122 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134211387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:40 Heat of formation + Delta-G solvation = -16.143437 kcal Electronic energy + Delta-G solvation = -15839.692261 eV Core-core repulsion = 13185.705406 eV Total energy + Delta-G solvation = -2653.986855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43210 -39.86085 -37.75560 -34.90823 -33.21397 -32.06607 -30.33409 -29.84112 -27.19426 -25.28688 -24.14979 -22.63563 -20.96174 -18.68701 -18.47320 -17.64004 -17.36109 -16.46050 -16.14870 -15.68979 -15.52932 -15.39077 -14.88437 -14.35085 -14.27424 -13.96765 -13.72528 -13.28766 -13.09550 -12.96421 -12.92428 -12.64064 -12.48418 -12.05368 -11.91770 -11.18419 -11.08062 -10.64947 -10.50649 -10.31721 -8.48670 -8.06616 -6.39016 -0.20390 0.39338 1.39866 1.41326 1.43624 1.49523 2.24511 2.42683 2.99403 3.06754 3.09075 3.64990 3.91070 3.98490 4.26690 4.29798 4.36797 4.63650 4.68089 4.73101 4.75532 4.88586 4.98611 5.03137 5.11294 5.22492 5.29179 5.60963 5.64113 6.00202 6.21211 6.41191 6.54658 6.74871 7.07762 7.32611 8.81420 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.006476 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.789597 B = 4322.289147 C = 4895.950377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.423 3.577 3 O -0.501 6.501 4 C -0.081 4.081 5 C -0.056 4.056 6 C -0.190 4.190 7 C 0.209 3.791 8 N -0.597 5.597 9 C 0.084 3.916 10 C 0.256 3.744 11 C -0.547 4.547 12 H 0.053 0.947 13 C 0.020 3.980 14 N -0.921 5.921 15 Si 0.957 3.043 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.275 1.275 19 C 0.011 3.989 20 N -0.408 5.408 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.153 0.847 25 H 0.164 0.836 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.024 0.976 30 H 0.023 0.977 31 H 0.269 0.731 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 9.832 1.406 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.304 3.696 3 O -0.378 6.378 4 C -0.216 4.216 5 C -0.077 4.077 6 C -0.219 4.219 7 C 0.095 3.905 8 N -0.298 5.298 9 C -0.058 4.058 10 C 0.135 3.865 11 C -0.586 4.586 12 H 0.071 0.929 13 C -0.180 4.180 14 N -0.560 5.560 15 Si 0.782 3.218 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.158 4.158 20 N -0.119 5.119 21 H 0.110 0.890 22 H 0.117 0.883 23 H 0.120 0.880 24 H 0.171 0.829 25 H 0.181 0.819 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.465 10.060 1.463 10.460 hybrid contribution 0.561 -1.007 -0.823 1.416 sum 3.026 9.053 0.640 9.567 Atomic orbital electron populations 1.22048 0.91009 1.04820 1.05704 1.22423 0.93038 0.85470 0.68644 1.90480 1.73264 1.34105 1.39933 1.21464 0.92502 0.93691 1.13977 1.22095 0.94034 0.99076 0.92470 1.21268 1.01430 0.89660 1.09560 1.19413 0.93472 0.87293 0.90350 1.47085 1.06885 1.03386 1.72483 1.21878 0.78161 1.03551 1.02188 1.19060 0.90877 0.80584 0.96018 1.21670 1.34761 1.09075 0.93075 0.92917 1.25669 0.95073 0.96193 1.01077 1.69997 1.36775 1.16533 1.32715 0.85624 0.78471 0.77600 0.80104 1.19432 1.20591 1.20037 1.22454 0.91009 0.95695 1.06676 1.67342 1.40557 0.97590 1.06423 0.89026 0.88300 0.88010 0.82896 0.81882 0.91517 0.91352 0.89669 0.95766 0.95906 0.92242 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 9.79 71.24 0.70 -3.44 16 2 C 0.42 12.80 7.22 28.02 0.20 13.00 16 3 O -0.50 -16.82 17.04 -3.01 -0.05 -16.88 16 4 C -0.08 -2.69 6.72 41.67 0.28 -2.41 16 5 C -0.06 -1.70 9.62 22.63 0.22 -1.48 16 6 C -0.19 -5.70 9.28 22.55 0.21 -5.49 16 7 C 0.21 7.66 6.57 38.66 0.25 7.91 16 8 N -0.60 -22.61 2.97 -726.03 -2.16 -24.77 16 9 C 0.08 2.42 10.20 127.77 1.30 3.72 16 10 C 0.26 11.93 4.91 85.63 0.42 12.35 16 11 C -0.55 -28.15 9.39 25.60 0.24 -27.91 16 12 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 13 C 0.02 1.06 5.46 84.65 0.46 1.53 16 14 N -0.92 -50.78 13.29 21.45 0.28 -50.50 16 15 Si 0.96 41.76 29.54 68.60 2.03 43.79 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.01 0.44 10.37 85.12 0.88 1.32 16 20 N -0.41 -15.02 9.77 -184.64 -1.80 -16.83 16 21 H 0.09 1.79 8.12 -2.38 -0.02 1.77 16 22 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 24 H 0.15 4.01 7.63 -2.91 -0.02 3.99 16 25 H 0.16 3.80 6.24 -2.91 -0.02 3.78 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 28 H 0.08 1.98 6.22 -2.38 -0.01 1.96 16 29 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 30 H 0.02 1.15 6.20 -2.39 -0.01 1.13 16 31 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.15 6.45 6.14 -2.91 -0.02 6.44 16 Total: -1.00 -59.59 280.70 4.59 -54.99 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.12 Total: 11.10 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.17 Total: -0.91 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -3.67 Total: -92.09 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.05 Total: -16.88 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -59.59 4.59 -54.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134211387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.848 kcal (2) G-P(sol) polarization free energy of solvation -59.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds