Wall clock time and date at job start Mon Mar 30 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99730 * 2 1 4 4 C 1.34777 * 120.00207 * 180.02562 * 2 1 3 5 5 O 1.21588 * 119.99884 * 5.31762 * 4 2 1 6 6 N 1.34774 * 120.00129 * 185.32517 * 4 2 1 7 7 C 1.39956 * 120.00199 * 172.64231 * 6 4 2 8 8 C 1.39284 * 119.94699 * 326.10915 * 7 6 4 9 9 C 1.38489 * 120.42735 * 179.97438 * 8 7 6 10 10 C 1.37681 * 120.32184 * 0.29692 * 9 8 7 11 11 C 1.40742 * 119.88043 * 359.43424 * 10 9 8 12 12 C 1.41416 * 120.20894 * 180.31335 * 11 10 9 13 13 H 1.07996 * 119.99874 * 211.12209 * 12 11 10 14 14 C 1.39927 * 119.99894 * 31.11847 * 12 11 10 15 15 N 1.30834 * 120.00270 * 7.96096 * 14 12 11 16 16 Si 1.86804 * 120.00112 * 187.95960 * 14 12 11 17 17 H 1.48497 * 109.46885 * 59.99991 * 16 14 12 18 18 H 1.48498 * 109.47359 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46980 * 300.00589 * 16 14 12 20 20 C 1.38237 * 119.94243 * 146.08338 * 7 6 4 21 21 H 1.09000 * 109.47221 * 269.99852 * 1 2 3 22 22 H 1.09000 * 109.47288 * 29.99809 * 1 2 3 23 23 H 1.09007 * 109.47329 * 149.99565 * 1 2 3 24 24 H 1.08999 * 109.47001 * 185.39040 * 3 2 1 25 25 H 1.09001 * 109.47637 * 305.39768 * 3 2 1 26 26 H 1.09001 * 109.47144 * 65.39405 * 3 2 1 27 27 H 0.97005 * 119.99944 * 352.64829 * 6 4 2 28 28 H 1.07998 * 119.78649 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.83804 * 180.02562 * 9 8 7 30 30 H 1.07997 * 120.05754 * 179.70820 * 10 9 8 31 31 H 0.96996 * 119.99852 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.16510 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5349 -2.2179 -0.0986 6 7 3.4823 -1.1697 0.1078 7 6 4.1696 -2.3790 0.2623 8 6 3.5883 -3.4227 0.9785 9 6 4.2593 -4.6237 1.1370 10 6 5.5121 -4.7971 0.5930 11 6 6.1097 -3.7534 -0.1381 12 6 7.3934 -3.9262 -0.7055 13 1 8.0557 -3.0797 -0.8107 14 6 7.8055 -5.1941 -1.1305 15 7 6.9537 -6.1870 -1.1485 16 14 9.5720 -5.4692 -1.6720 17 1 10.4894 -5.1518 -0.5483 18 1 9.7518 -6.8878 -2.0728 19 1 9.8791 -4.5866 -2.8261 20 6 5.4242 -2.5359 -0.2967 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 3.2651 1.0719 -0.0965 25 1 1.8636 1.8811 -0.8377 26 1 2.0085 1.7974 0.9344 27 1 3.9728 -0.3333 0.0788 28 1 2.6076 -3.2947 1.4122 29 1 3.7994 -5.4267 1.6938 30 1 6.0335 -5.7338 0.7232 31 1 7.2393 -7.0657 -1.4435 32 1 5.8754 -1.7276 -0.8529 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167503691.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:21 Heat of formation + Delta-G solvation = 4.089246 kcal Electronic energy + Delta-G solvation = -15930.106107 eV Core-core repulsion = 13276.996608 eV Total energy + Delta-G solvation = -2653.109500 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07929 -37.43009 -35.29143 -34.42077 -32.95201 -29.76434 -28.69816 -27.61314 -25.54940 -25.14521 -21.28314 -20.91502 -19.36589 -18.02170 -17.39631 -15.86469 -15.73544 -15.24462 -14.62390 -14.34893 -13.86747 -13.54921 -12.91774 -12.85066 -12.66176 -12.48489 -12.18226 -11.94683 -11.61117 -11.13962 -11.10021 -10.89635 -10.45205 -10.15252 -9.56171 -9.48080 -9.25918 -8.91496 -8.58518 -7.37121 -6.83583 -6.58818 -4.33266 2.75932 2.87951 2.98266 3.11215 3.13854 3.25638 3.69368 3.99717 4.20269 4.75696 4.99892 5.21889 5.23610 5.52223 5.59352 5.71561 5.83372 6.28925 6.49072 6.58937 6.77042 6.89555 6.97734 7.09992 7.26780 7.37027 7.68549 7.81457 8.08891 8.11272 8.27658 8.41800 8.68334 8.92567 8.96983 9.05804 10.33410 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.048961 B = 0.005613 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.744566 B = 4987.083723 C = 5344.105932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.644 5.644 3 C 0.082 3.918 4 C 0.700 3.300 5 O -0.569 6.569 6 N -0.681 5.681 7 C 0.166 3.834 8 C -0.220 4.220 9 C -0.098 4.098 10 C -0.160 4.160 11 C 0.122 3.878 12 C -0.468 4.468 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.806 5.806 16 Si 0.912 3.088 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.239 4.239 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.395 0.605 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.279 0.721 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 11.230 1.817 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.384 5.384 3 C -0.062 4.062 4 C 0.402 3.598 5 O -0.444 6.444 6 N -0.330 5.330 7 C 0.073 3.927 8 C -0.241 4.241 9 C -0.117 4.117 10 C -0.180 4.180 11 C 0.120 3.880 12 C -0.499 4.499 13 H 0.093 0.907 14 C -0.142 4.142 15 N -0.433 5.433 16 Si 0.737 3.263 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.261 4.261 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.232 0.768 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.898 10.232 1.690 11.931 hybrid contribution 0.964 0.378 -0.428 1.120 sum -4.934 10.610 1.262 11.769 Atomic orbital electron populations 1.21433 0.78167 1.02856 1.01366 1.46950 1.06938 1.04836 1.79710 1.21703 0.96873 0.85854 1.01745 1.15908 0.82115 0.83686 0.78132 1.90936 1.67667 1.29782 1.56047 1.42843 1.04818 1.09267 1.76101 1.17266 0.92269 0.84790 0.98331 1.20341 1.01023 0.94765 1.07958 1.20606 0.95531 0.95502 1.00027 1.21410 0.95516 1.00860 1.00239 1.17372 0.92399 0.89826 0.88448 1.19437 0.99639 0.94294 1.36540 0.90702 1.25846 0.98930 0.95550 0.93901 1.69790 1.35106 1.02068 1.36314 0.86322 0.82466 0.77850 0.79697 1.19003 1.20435 1.19204 1.20753 0.95685 1.00688 1.08959 0.93295 0.91692 0.90388 0.91039 0.91946 0.92346 0.76832 0.88150 0.88997 0.86172 0.91023 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.21 10.52 59.85 0.63 1.84 16 2 N -0.64 -9.03 3.27 -195.34 -0.64 -9.67 16 3 C 0.08 0.78 10.64 59.85 0.64 1.42 16 4 C 0.70 13.42 7.97 -86.92 -0.69 12.73 16 5 O -0.57 -13.32 13.70 5.29 0.07 -13.24 16 6 N -0.68 -12.99 5.24 -14.27 -0.07 -13.06 16 7 C 0.17 3.90 6.25 -83.76 -0.52 3.38 16 8 C -0.22 -5.44 8.66 -39.10 -0.34 -5.78 16 9 C -0.10 -2.45 10.02 -39.69 -0.40 -2.84 16 10 C -0.16 -4.31 8.64 -38.84 -0.34 -4.64 16 11 C 0.12 3.32 5.53 -106.85 -0.59 2.73 16 12 C -0.47 -12.55 9.06 -37.74 -0.34 -12.89 16 13 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 14 C 0.07 1.89 5.29 -17.34 -0.09 1.80 16 15 N -0.81 -21.51 10.86 55.55 0.60 -20.91 16 16 Si 0.91 19.03 29.57 -169.99 -5.03 14.00 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.24 -5.92 9.70 -38.69 -0.38 -6.29 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.53 8.07 -51.93 -0.42 0.12 16 23 H 0.08 1.04 7.35 -51.93 -0.38 0.66 16 24 H 0.07 0.65 5.52 -51.93 -0.29 0.37 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.39 6.00 6.23 -40.82 -0.25 5.75 16 28 H 0.10 2.48 6.50 -52.49 -0.34 2.14 16 29 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.12 3.31 6.30 -52.49 -0.33 2.97 16 31 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 32 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -32.18 272.91 -7.05 -39.23 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.67 Total: 8.09 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.42 Total: -8.56 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.11 Total: -43.63 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.18 -7.05 -39.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167503691.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.317 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds