Wall clock time and date at job start Mon Mar 30 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99730 * 2 1 4 4 C 1.34777 * 120.00207 * 180.02562 * 2 1 3 5 5 O 1.21588 * 119.99884 * 5.31762 * 4 2 1 6 6 N 1.34774 * 120.00129 * 185.32517 * 4 2 1 7 7 C 1.39956 * 120.00199 * 172.64231 * 6 4 2 8 8 C 1.39284 * 119.94699 * 326.10915 * 7 6 4 9 9 C 1.38489 * 120.42735 * 179.97438 * 8 7 6 10 10 C 1.37681 * 120.32184 * 0.29692 * 9 8 7 11 11 C 1.40742 * 119.88043 * 359.43424 * 10 9 8 12 12 C 1.41416 * 120.20894 * 180.31335 * 11 10 9 13 13 H 1.07996 * 119.99874 * 211.12209 * 12 11 10 14 14 C 1.39927 * 119.99894 * 31.11847 * 12 11 10 15 15 N 1.30834 * 120.00270 * 7.96096 * 14 12 11 16 16 Si 1.86804 * 120.00112 * 187.95960 * 14 12 11 17 17 H 1.48497 * 109.46885 * 59.99991 * 16 14 12 18 18 H 1.48498 * 109.47359 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46980 * 300.00589 * 16 14 12 20 20 C 1.38237 * 119.94243 * 146.08338 * 7 6 4 21 21 H 1.09000 * 109.47221 * 269.99852 * 1 2 3 22 22 H 1.09000 * 109.47288 * 29.99809 * 1 2 3 23 23 H 1.09007 * 109.47329 * 149.99565 * 1 2 3 24 24 H 1.08999 * 109.47001 * 185.39040 * 3 2 1 25 25 H 1.09001 * 109.47637 * 305.39768 * 3 2 1 26 26 H 1.09001 * 109.47144 * 65.39405 * 3 2 1 27 27 H 0.97005 * 119.99944 * 352.64829 * 6 4 2 28 28 H 1.07998 * 119.78649 * 0.02562 * 8 7 6 29 29 H 1.07996 * 119.83804 * 180.02562 * 9 8 7 30 30 H 1.07997 * 120.05754 * 179.70820 * 10 9 8 31 31 H 0.96996 * 119.99852 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.16510 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5349 -2.2179 -0.0986 6 7 3.4823 -1.1697 0.1078 7 6 4.1696 -2.3790 0.2623 8 6 3.5883 -3.4227 0.9785 9 6 4.2593 -4.6237 1.1370 10 6 5.5121 -4.7971 0.5930 11 6 6.1097 -3.7534 -0.1381 12 6 7.3934 -3.9262 -0.7055 13 1 8.0557 -3.0797 -0.8107 14 6 7.8055 -5.1941 -1.1305 15 7 6.9537 -6.1870 -1.1485 16 14 9.5720 -5.4692 -1.6720 17 1 10.4894 -5.1518 -0.5483 18 1 9.7518 -6.8878 -2.0728 19 1 9.8791 -4.5866 -2.8261 20 6 5.4242 -2.5359 -0.2967 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 3.2651 1.0719 -0.0965 25 1 1.8636 1.8811 -0.8377 26 1 2.0085 1.7974 0.9344 27 1 3.9728 -0.3333 0.0788 28 1 2.6076 -3.2947 1.4122 29 1 3.7994 -5.4267 1.6938 30 1 6.0335 -5.7338 0.7232 31 1 7.2393 -7.0657 -1.4435 32 1 5.8754 -1.7276 -0.8529 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167503691.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:21 Heat of formation + Delta-G solvation = -16.557085 kcal Electronic energy + Delta-G solvation = -15931.001399 eV Core-core repulsion = 13276.996608 eV Total energy + Delta-G solvation = -2654.004792 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.57365 -39.23936 -36.60533 -36.17017 -34.79000 -31.74702 -30.29884 -28.67517 -27.18343 -26.70421 -23.05067 -22.78349 -20.95290 -19.58286 -18.98649 -17.53623 -17.06095 -16.99298 -16.33328 -16.02030 -15.30904 -14.92811 -14.65254 -14.41470 -14.06614 -13.63372 -13.38364 -13.33279 -12.96107 -12.86780 -12.83446 -12.75368 -12.24342 -11.92409 -11.41633 -11.26894 -11.12054 -10.74845 -9.72386 -9.36099 -8.70983 -8.50046 -6.36724 0.93595 0.98425 1.41772 1.53790 1.55011 1.66461 2.12745 2.25420 2.82297 2.96493 3.71356 4.20323 4.32164 4.44347 4.53680 4.65532 4.75990 4.84016 4.91901 5.00963 5.04351 5.13642 5.17401 5.35109 5.52584 5.71119 5.78569 5.97158 6.11283 6.15157 6.36494 6.69572 6.90672 6.96159 7.02279 7.51640 8.43085 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.048961 B = 0.005613 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.744566 B = 4987.083723 C = 5344.105932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.636 5.636 3 C 0.073 3.927 4 C 0.692 3.308 5 O -0.619 6.619 6 N -0.673 5.673 7 C 0.176 3.824 8 C -0.233 4.233 9 C -0.099 4.099 10 C -0.187 4.187 11 C 0.095 3.905 12 C -0.498 4.498 13 H 0.082 0.918 14 C 0.029 3.971 15 N -0.840 5.840 16 Si 0.989 3.011 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.260 1.260 20 C -0.247 4.247 21 H 0.059 0.941 22 H 0.106 0.894 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.414 0.586 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.285 0.715 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 13.329 1.406 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.374 5.374 3 C -0.069 4.069 4 C 0.393 3.607 5 O -0.499 6.499 6 N -0.324 5.324 7 C 0.082 3.918 8 C -0.254 4.254 9 C -0.118 4.118 10 C -0.207 4.207 11 C 0.092 3.908 12 C -0.529 4.529 13 H 0.100 0.900 14 C -0.183 4.183 15 N -0.467 5.467 16 Si 0.810 3.190 17 H -0.182 1.182 18 H -0.197 1.197 19 H -0.184 1.184 20 C -0.269 4.269 21 H 0.077 0.923 22 H 0.124 0.876 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.255 0.745 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.594 12.428 1.288 13.690 hybrid contribution 0.723 -0.162 -0.284 0.794 sum -4.871 12.267 1.004 13.237 Atomic orbital electron populations 1.21654 0.76616 1.03649 1.02334 1.47082 1.07975 1.04642 1.77684 1.22049 0.96550 0.83970 1.04287 1.16173 0.81869 0.84641 0.77974 1.90900 1.68517 1.32207 1.58274 1.42644 1.05151 1.08648 1.75970 1.17277 0.91934 0.86029 0.96586 1.20459 1.01004 0.95252 1.08685 1.20817 0.95040 0.96314 0.99666 1.21344 0.96501 1.00706 1.02112 1.17766 0.93273 0.90867 0.88859 1.19770 1.00074 0.95457 1.37565 0.90022 1.26799 1.03464 0.94730 0.93348 1.69881 1.37343 1.02710 1.36757 0.85152 0.76398 0.78041 0.79444 1.18184 1.19651 1.18402 1.20910 0.96187 1.00536 1.09311 0.92268 0.87573 0.92872 0.90944 0.89167 0.89930 0.74534 0.88275 0.87249 0.87683 0.90417 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.06 10.52 127.77 1.34 3.40 16 2 N -0.64 -16.23 3.27 -890.18 -2.91 -19.14 16 3 C 0.07 1.10 10.64 127.77 1.36 2.46 16 4 C 0.69 25.86 7.97 179.06 1.43 27.29 16 5 O -0.62 -29.23 13.70 -3.99 -0.05 -29.29 16 6 N -0.67 -24.89 5.24 -317.33 -1.66 -26.55 16 7 C 0.18 8.28 6.25 38.10 0.24 8.51 16 8 C -0.23 -11.69 8.66 22.58 0.20 -11.50 16 9 C -0.10 -5.11 10.02 22.20 0.22 -4.89 16 10 C -0.19 -10.36 8.64 22.75 0.20 -10.16 16 11 C 0.10 5.28 5.53 -21.31 -0.12 5.16 16 12 C -0.50 -27.03 9.06 23.46 0.21 -26.81 16 13 H 0.08 4.15 7.86 -2.91 -0.02 4.13 16 14 C 0.03 1.52 5.29 85.25 0.45 1.97 16 15 N -0.84 -45.63 10.86 21.82 0.24 -45.40 16 16 Si 0.99 38.69 29.57 68.60 2.03 40.72 16 17 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 20 C -0.25 -12.30 9.70 22.85 0.22 -12.08 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 23 H 0.05 1.38 7.35 -2.38 -0.02 1.36 16 24 H 0.07 1.08 5.52 -2.39 -0.01 1.07 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.41 11.74 6.23 -92.70 -0.58 11.16 16 28 H 0.10 4.98 6.50 -2.91 -0.02 4.96 16 29 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 30 H 0.11 6.04 6.30 -2.91 -0.02 6.02 16 31 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 32 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -71.51 272.91 3.94 -67.57 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.56 Total: 28.74 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 5.75 Total: -16.65 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -4.34 Total: -91.09 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.05 Total: -29.29 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -71.51 3.94 -67.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167503691.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.013 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds