Wall clock time and date at job start Mon Mar 30 2020 03:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40220 * 110.99680 * 2 1 4 4 C 1.39100 * 118.53834 * 324.74998 * 3 2 1 5 5 C 1.38046 * 120.34149 * 180.44337 * 4 3 2 6 6 C 1.38848 * 120.02761 * 0.02562 * 5 4 3 7 7 N 1.39988 * 120.05749 * 179.97438 * 6 5 4 8 8 C 1.38724 * 119.87897 * 359.91231 * 6 5 4 9 9 C 1.38765 * 120.15477 * 359.97438 * 8 6 5 10 10 O 1.36155 * 118.69209 * 180.48875 * 9 8 6 11 11 C 1.43122 * 116.72125 * 194.92537 * 10 9 8 12 12 C 1.46750 * 111.00089 * 125.37293 * 2 1 3 13 13 H 1.09002 * 109.61571 * 304.67483 * 12 2 1 14 14 C 1.50701 * 109.62066 * 65.03983 * 12 2 1 15 15 H 1.07994 * 119.99304 * 359.97438 * 14 12 2 16 16 C 1.37871 * 120.00296 * 180.02562 * 14 12 2 17 17 N 1.31521 * 119.99820 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00120 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47311 * 89.99530 * 18 16 14 20 20 H 1.48497 * 109.47318 * 209.99701 * 18 16 14 21 21 H 1.48499 * 109.47143 * 329.99675 * 18 16 14 22 22 H 1.08998 * 109.46850 * 63.95421 * 1 2 3 23 23 H 1.08997 * 109.46852 * 183.95011 * 1 2 3 24 24 H 1.08993 * 109.46753 * 303.95107 * 1 2 3 25 25 H 1.07998 * 119.82868 * 0.45794 * 4 3 2 26 26 H 1.07999 * 119.98414 * 180.02562 * 5 4 3 27 27 H 0.97005 * 119.99992 * 179.97438 * 7 6 5 28 28 H 0.96994 * 120.00208 * 359.97438 * 7 6 5 29 29 H 1.08002 * 119.92704 * 180.26125 * 8 6 5 30 30 H 1.09001 * 109.76725 * 194.94614 * 11 10 9 31 31 H 1.09000 * 109.81019 * 74.18679 * 11 10 9 32 32 H 0.96997 * 119.99773 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9715 1.3091 0.0000 4 6 1.2779 2.2871 -0.7053 5 6 1.7441 3.5860 -0.7379 6 6 2.9112 3.9224 -0.0651 7 7 3.3849 5.2393 -0.0982 8 6 3.6063 2.9515 0.6409 9 6 3.1375 1.6459 0.6765 10 8 3.8377 0.7190 1.3868 11 6 3.5230 -0.6548 1.1380 12 6 1.9950 -0.7931 1.1171 13 1 1.5808 -0.4235 2.0552 14 6 1.6171 -2.2402 0.9324 15 1 1.0419 -2.5421 0.0697 16 6 2.0048 -3.1785 1.8652 17 7 2.7048 -2.8106 2.9161 18 14 1.5358 -4.9721 1.6366 19 1 2.5964 -5.6664 0.8631 20 1 1.3885 -5.6185 2.9653 21 1 0.2495 -5.0573 0.8994 22 1 -0.3633 0.4512 -0.9233 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3632 0.5739 0.8524 25 1 0.3699 2.0289 -1.2298 26 1 1.2008 4.3409 -1.2869 27 1 4.2001 5.4735 0.3724 28 1 2.8979 5.9177 -0.5917 29 1 4.5119 3.2132 1.1680 30 1 3.9389 -1.2775 1.9301 31 1 3.9338 -0.9594 0.1755 32 1 2.9779 -3.4708 3.5722 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213269873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:45 Heat of formation + Delta-G solvation = 0.055594 kcal Electronic energy + Delta-G solvation = -16586.927999 eV Core-core repulsion = 13933.643587 eV Total energy + Delta-G solvation = -2653.284412 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08110 -37.31474 -35.89100 -33.72009 -32.35029 -29.73669 -28.79476 -27.37136 -25.25268 -24.06365 -22.24732 -21.38797 -19.20401 -17.44408 -16.92070 -16.55147 -15.51437 -15.28099 -14.69525 -14.40782 -14.00336 -13.49766 -13.31659 -13.18931 -12.66354 -12.49054 -11.89518 -11.72457 -11.45048 -11.09755 -11.02828 -10.79838 -10.47831 -10.22035 -9.84128 -9.64169 -9.22583 -8.65109 -8.18066 -7.72536 -6.30923 -6.20871 -4.29002 1.99442 2.19959 3.22434 3.29324 3.32391 4.00882 4.24552 4.30819 4.59492 4.91913 5.10435 5.34629 5.60408 5.86328 5.96043 6.07944 6.19073 6.31104 6.42554 6.54238 6.59776 6.68402 6.71986 6.92205 7.01000 7.10390 7.38343 7.60522 7.79966 7.83147 8.02931 8.05684 8.36633 8.45010 8.78324 9.37221 10.84875 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.049110 B = 0.007164 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.011563 B = 3907.721917 C = 4374.930511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.487 5.487 3 C 0.008 3.992 4 C -0.093 4.093 5 C -0.210 4.210 6 C 0.203 3.797 7 N -0.886 5.886 8 C -0.212 4.212 9 C 0.142 3.858 10 O -0.329 6.329 11 C 0.061 3.939 12 C 0.185 3.815 13 H 0.022 0.978 14 C -0.509 4.509 15 H 0.070 0.930 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.907 3.093 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.023 0.977 25 H 0.122 0.878 26 H 0.112 0.888 27 H 0.393 0.607 28 H 0.393 0.607 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.049 0.951 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 10.250 -4.649 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.202 5.202 3 C -0.093 4.093 4 C -0.114 4.114 5 C -0.234 4.234 6 C 0.101 3.899 7 N -0.427 5.427 8 C -0.236 4.236 9 C 0.092 3.908 10 O -0.242 6.242 11 C -0.013 4.013 12 C 0.080 3.920 13 H 0.040 0.960 14 C -0.547 4.547 15 H 0.089 0.911 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.734 3.266 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.074 0.926 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.140 0.860 26 H 0.130 0.870 27 H 0.220 0.780 28 H 0.220 0.780 29 H 0.139 0.861 30 H 0.155 0.845 31 H 0.068 0.932 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.443 9.785 -4.731 10.878 hybrid contribution -0.388 -0.432 0.437 0.726 sum -0.831 9.354 -4.295 10.326 Atomic orbital electron populations 1.22310 0.86421 1.02852 0.99135 1.58976 1.07982 1.07904 1.45375 1.19097 0.96812 0.90746 1.02601 1.20568 0.99716 0.91520 0.99639 1.20152 0.98547 0.96722 1.07943 1.17220 0.92959 0.84563 0.95199 1.42305 1.31270 1.07329 1.61820 1.19643 1.03628 0.90950 1.09369 1.18513 0.91017 0.89499 0.91739 1.86159 1.59845 1.17843 1.60395 1.23710 0.98454 0.76497 1.02665 1.19904 0.91568 0.93644 0.86877 0.95999 1.20970 1.35174 0.90285 1.08306 0.91148 1.25013 0.94812 0.99709 0.94673 1.69833 1.37232 1.34687 1.11353 0.86344 0.79055 0.83699 0.77492 1.20394 1.21088 1.19705 0.92589 0.89891 0.95829 0.85982 0.86958 0.78010 0.78007 0.86138 0.84480 0.93248 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 8.71 60.07 0.52 1.30 16 2 N -0.49 -11.16 4.64 -172.28 -0.80 -11.96 16 3 C 0.01 0.16 5.82 -83.43 -0.49 -0.32 16 4 C -0.09 -1.67 9.07 -39.33 -0.36 -2.03 16 5 C -0.21 -3.35 9.89 -39.43 -0.39 -3.74 16 6 C 0.20 3.24 6.75 -83.73 -0.57 2.67 16 7 N -0.89 -10.14 9.10 32.43 0.30 -9.85 16 8 C -0.21 -3.93 9.79 -39.21 -0.38 -4.31 16 9 C 0.14 3.11 6.47 -39.12 -0.25 2.86 16 10 O -0.33 -7.91 10.40 -20.23 -0.21 -8.12 16 11 C 0.06 1.54 6.36 37.39 0.24 1.78 16 12 C 0.19 4.77 1.87 -68.72 -0.13 4.64 16 13 H 0.02 0.64 8.13 -51.93 -0.42 0.21 16 14 C -0.51 -13.52 7.83 -34.44 -0.27 -13.79 16 15 H 0.07 1.85 7.11 -52.49 -0.37 1.48 16 16 C 0.06 1.60 5.31 -17.82 -0.09 1.50 16 17 N -0.89 -24.50 11.40 55.43 0.63 -23.87 16 18 Si 0.91 20.49 29.54 -169.99 -5.02 15.46 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.06 0.93 6.41 -51.93 -0.33 0.60 16 23 H 0.08 1.68 6.59 -51.93 -0.34 1.34 16 24 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 25 H 0.12 1.96 6.11 -52.49 -0.32 1.64 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.39 3.83 8.85 -40.82 -0.36 3.47 16 28 H 0.39 3.56 8.85 -40.82 -0.36 3.20 16 29 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.14 3.64 6.14 -51.93 -0.32 3.33 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 263.13 15.07 3.97 3.97 Total: -1.00 -29.00 263.13 -6.96 -35.96 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.66 Total: 7.85 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -2.17 Total: -9.45 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.13 Total: -45.67 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.21 Total: -8.12 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.00 -6.96 -35.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213269873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.021 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds