Wall clock time and date at job start Mon Mar 30 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.82879 * 2 1 4 4 N 1.47551 * 110.33096 * 239.01589 * 2 1 3 5 5 C 1.40753 * 117.55618 * 282.96671 * 4 2 1 6 6 C 1.38551 * 120.00957 * 165.51544 * 5 4 2 7 7 C 1.38263 * 119.97016 * 179.68983 * 6 5 4 8 8 C 1.38851 * 119.97610 * 359.97438 * 7 6 5 9 9 N 1.39984 * 119.92727 * 180.02562 * 8 7 6 10 10 C 1.38798 * 120.13735 * 0.03978 * 8 7 6 11 11 C 1.38645 * 120.00507 * 0.31554 * 10 8 7 12 12 O 1.35943 * 119.60199 * 179.33109 * 11 10 8 13 13 C 1.42941 * 117.79226 * 159.78529 * 12 11 10 14 14 H 1.09010 * 109.57533 * 169.34756 * 13 12 11 15 15 C 1.50701 * 109.58088 * 289.60706 * 13 12 11 16 16 H 1.08001 * 119.99900 * 120.00045 * 15 13 12 17 17 C 1.37875 * 120.00348 * 300.00193 * 15 13 12 18 18 N 1.31514 * 119.99761 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00173 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46975 * 60.00082 * 19 17 15 21 21 H 1.48501 * 109.46950 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47263 * 300.00169 * 19 17 15 23 23 H 1.09004 * 109.47289 * 299.10266 * 1 2 3 24 24 H 1.09001 * 109.47163 * 59.09903 * 1 2 3 25 25 H 1.09003 * 109.47322 * 179.10148 * 1 2 3 26 26 H 0.96993 * 121.27516 * 102.23452 * 4 2 1 27 27 H 1.07999 * 120.01552 * 359.67452 * 6 5 4 28 28 H 1.08001 * 120.01121 * 180.02562 * 7 6 5 29 29 H 0.96999 * 119.99451 * 179.97438 * 9 8 7 30 30 H 0.96992 * 120.00306 * 359.97438 * 9 8 7 31 31 H 1.08002 * 119.99325 * 180.02562 * 10 8 7 32 32 H 0.97001 * 119.99926 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 7 2.0426 -0.7123 -1.1862 5 6 2.0063 -2.1192 -1.1670 6 6 2.1851 -2.8330 -2.3409 7 6 2.1557 -4.2152 -2.3201 8 6 1.9475 -4.8867 -1.1228 9 7 1.9184 -6.2861 -1.1028 10 6 1.7679 -4.1733 0.0542 11 6 1.7896 -2.7872 0.0350 12 8 1.5992 -2.0965 1.1903 13 6 2.0522 -0.7417 1.2392 14 1 1.6703 -0.2612 2.1402 15 6 3.5588 -0.7130 1.2515 16 1 4.0958 -0.2082 0.4620 17 6 4.2519 -1.3312 2.2706 18 7 3.5980 -1.9463 3.2317 19 14 6.1195 -1.2962 2.2854 20 1 6.5878 0.1121 2.3359 21 1 6.6188 -2.0275 3.4776 22 1 6.6365 -1.9460 1.0543 23 1 -0.3634 0.4998 0.8979 24 1 -0.3633 0.5278 -0.8818 25 1 -0.3634 -1.0275 -0.0161 26 1 2.3823 -0.2294 -1.9557 27 1 2.3471 -2.3101 -3.2719 28 1 2.2954 -4.7723 -3.2347 29 1 1.7734 -6.7562 -0.2668 30 1 2.0432 -6.7856 -1.9248 31 1 1.6065 -4.6981 0.9843 32 1 4.0856 -2.3809 3.9489 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213270222.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:20 Heat of formation + Delta-G solvation = -28.727400 kcal Electronic energy + Delta-G solvation = -16904.361364 eV Core-core repulsion = 14249.828827 eV Total energy + Delta-G solvation = -2654.532536 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.18723 -38.62665 -36.12765 -34.97669 -34.22304 -31.27035 -30.80844 -28.95769 -27.37536 -25.03345 -23.75965 -23.14917 -20.28346 -19.06764 -18.40202 -17.93081 -17.06118 -16.71905 -16.42343 -15.72141 -15.58916 -15.09680 -14.39504 -14.30823 -14.15433 -13.82062 -13.54145 -13.29651 -12.84530 -12.82953 -12.73725 -12.45968 -12.12536 -11.96312 -11.75129 -10.99021 -10.71055 -10.56496 -9.53719 -8.89766 -8.15424 -7.34361 -6.36474 0.80511 1.14159 1.35601 1.38344 1.44925 2.36593 2.77793 2.94832 3.23522 3.32500 3.61490 4.16415 4.20447 4.49362 4.49509 4.52318 4.68500 4.82821 4.98010 5.04166 5.19198 5.25148 5.40092 5.51307 5.62884 5.69955 5.83496 5.97291 6.05300 6.56379 6.69123 6.84340 7.25972 7.29574 7.32632 7.47206 8.88847 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.011662 C = 0.009144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.863263 B = 2400.365785 C = 3061.344951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.126 3.874 3 H 0.094 0.906 4 N -0.740 5.740 5 C 0.077 3.923 6 C -0.120 4.120 7 C -0.207 4.207 8 C 0.193 3.807 9 N -0.874 5.874 10 C -0.231 4.231 11 C 0.122 3.878 12 O -0.329 6.329 13 C 0.196 3.804 14 H 0.052 0.948 15 C -0.554 4.554 16 H 0.058 0.942 17 C 0.029 3.971 18 N -0.895 5.895 19 Si 0.951 3.049 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.279 1.279 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.403 0.597 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.398 0.602 30 H 0.406 0.594 31 H 0.101 0.899 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 -2.239 -10.162 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 H 0.112 0.888 4 N -0.377 5.377 5 C -0.024 4.024 6 C -0.144 4.144 7 C -0.230 4.230 8 C 0.088 3.912 9 N -0.417 5.417 10 C -0.255 4.255 11 C 0.071 3.929 12 O -0.243 6.243 13 C 0.141 3.859 14 H 0.070 0.930 15 C -0.591 4.591 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.533 5.533 19 Si 0.776 3.224 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.205 1.205 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.239 0.761 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.226 0.774 30 H 0.236 0.764 31 H 0.119 0.881 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.507 -2.265 -9.648 10.512 hybrid contribution 1.217 -0.127 0.337 1.269 sum -2.290 -2.393 -9.310 9.882 Atomic orbital electron populations 1.22033 0.95198 1.01012 1.02260 1.21697 0.93460 0.96351 0.86542 0.88752 1.44319 1.72820 1.01344 1.19201 1.17869 1.06320 0.85256 0.92910 1.20426 1.04369 0.93841 0.95725 1.20375 1.12442 0.93619 0.96563 1.17292 0.96415 0.85029 0.92417 1.42181 1.84780 1.01732 1.12991 1.19785 1.16491 0.91490 0.97746 1.18554 0.98007 0.91201 0.85113 1.86089 1.75994 1.29073 1.33116 1.20441 0.93370 0.78113 0.93953 0.93024 1.21627 0.92252 1.36430 1.08805 0.92422 1.25796 1.02667 0.94082 0.94802 1.70152 1.37018 1.34164 1.11949 0.85739 0.80680 0.78715 0.77239 1.18678 1.20884 1.20487 0.91517 0.90851 0.94825 0.76091 0.84190 0.83898 0.77427 0.76423 0.88076 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.31 71.98 0.67 -4.42 16 2 C 0.13 5.05 3.34 44.98 0.15 5.20 16 3 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 4 N -0.74 -28.42 5.20 -315.03 -1.64 -30.06 16 5 C 0.08 3.27 6.10 38.02 0.23 3.50 16 6 C -0.12 -4.23 9.93 22.35 0.22 -4.00 16 7 C -0.21 -6.76 9.89 22.42 0.22 -6.54 16 8 C 0.19 6.92 6.75 38.12 0.26 7.17 16 9 N -0.87 -23.03 9.10 -51.28 -0.47 -23.50 16 10 C -0.23 -10.34 9.81 22.50 0.22 -10.12 16 11 C 0.12 5.94 5.73 22.60 0.13 6.07 16 12 O -0.33 -17.98 8.92 -92.90 -0.83 -18.81 16 13 C 0.20 10.08 2.64 30.04 0.08 10.16 16 14 H 0.05 2.83 8.14 -2.38 -0.02 2.81 16 15 C -0.55 -30.66 7.80 25.60 0.20 -30.46 16 16 H 0.06 3.14 7.69 -2.91 -0.02 3.12 16 17 C 0.03 1.66 5.40 84.65 0.46 2.12 16 18 N -0.90 -53.83 12.84 21.45 0.28 -53.55 16 19 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.03 1.31 7.28 -2.39 -0.02 1.29 16 26 H 0.40 12.90 8.91 -92.71 -0.83 12.07 16 27 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 29 H 0.40 9.68 8.84 -92.71 -0.82 8.86 16 30 H 0.41 8.05 8.84 -92.71 -0.82 7.23 16 31 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -67.81 270.26 0.91 -66.91 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -1.30 Total: 33.47 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 2.84 Total: -21.32 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -1.83 Total: -107.11 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.83 Total: -18.81 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.81 0.91 -66.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213270222.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.179 kcal (2) G-P(sol) polarization free energy of solvation -67.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds