Wall clock time and date at job start Mon Mar 30 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.39918 * 110.85877 * 2 1 4 4 C 1.39107 * 118.44975 * 75.11170 * 3 2 1 5 5 C 1.38643 * 120.19177 * 180.23135 * 4 3 2 6 6 N 1.39923 * 120.02438 * 179.97438 * 5 4 3 7 7 C 1.38873 * 119.95251 * 0.02562 * 5 4 3 8 8 C 1.38124 * 119.95307 * 359.90275 * 7 5 4 9 9 C 1.38772 * 120.30852 * 0.02562 * 8 7 5 10 10 O 1.36277 * 118.67342 * 180.22266 * 9 8 7 11 11 C 1.43129 * 116.68972 * 194.86561 * 10 9 8 12 12 C 1.46752 * 111.00169 * 234.74772 * 2 1 3 13 13 H 1.09004 * 109.61962 * 194.30985 * 12 2 1 14 14 C 1.50703 * 109.61816 * 314.66511 * 12 2 1 15 15 H 1.08000 * 120.00007 * 85.45207 * 14 12 2 16 16 C 1.37876 * 120.00203 * 265.45247 * 14 12 2 17 17 N 1.31512 * 120.00113 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 120.00193 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.46841 * 269.99902 * 18 16 14 20 20 H 1.48505 * 109.47172 * 29.99655 * 18 16 14 21 21 H 1.48497 * 109.47252 * 149.99685 * 18 16 14 22 22 H 1.08995 * 109.47201 * 191.14965 * 1 2 3 23 23 H 1.08997 * 109.47139 * 311.15568 * 1 2 3 24 24 H 1.09003 * 109.46831 * 71.14985 * 1 2 3 25 25 H 1.07996 * 119.90240 * 0.21066 * 4 3 2 26 26 H 0.96997 * 119.99341 * 0.02562 * 6 5 4 27 27 H 0.96993 * 119.99950 * 180.02562 * 6 5 4 28 28 H 1.08003 * 120.02343 * 179.88177 * 7 5 4 29 29 H 1.08004 * 119.84999 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.76674 * 195.13655 * 11 10 9 31 31 H 1.08994 * 109.77814 * 74.34000 * 11 10 9 32 32 H 0.96994 * 120.00387 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9672 1.3075 0.0000 4 6 1.9095 2.0386 1.1820 5 6 2.3885 3.3391 1.2215 6 7 2.3282 4.0715 2.4122 7 6 2.9271 3.9147 0.0782 8 6 2.9867 3.1900 -1.0962 9 6 2.5100 1.8875 -1.1403 10 8 2.5894 1.2016 -2.3152 11 6 1.8070 0.0074 -2.4167 12 6 1.9950 -0.7908 -1.1188 13 1 3.0549 -0.9894 -0.9602 14 6 1.2447 -2.0943 -1.2139 15 1 0.3154 -2.1438 -1.7619 16 6 1.7446 -3.2237 -0.6012 17 7 1.0896 -4.3612 -0.6837 18 14 3.3515 -3.1381 0.3474 19 1 4.4828 -3.4358 -0.5674 20 1 3.5193 -1.7762 0.9152 21 1 3.3300 -4.1342 1.4486 22 1 -0.3633 -1.0082 0.1987 23 1 -0.3633 0.6763 0.7737 24 1 -0.3633 0.3320 -0.9726 25 1 1.4901 1.5920 2.0714 26 1 1.9516 3.6692 3.2104 27 1 2.6630 4.9814 2.4393 28 1 3.2987 4.9283 0.1072 29 1 3.4063 3.6391 -1.9843 30 1 2.1472 -0.5852 -3.2659 31 1 0.7555 0.2651 -2.5435 32 1 1.4411 -5.1557 -0.2524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213270691.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:49 Heat of formation + Delta-G solvation = -21.291622 kcal Electronic energy + Delta-G solvation = -16754.347011 eV Core-core repulsion = 14100.136915 eV Total energy + Delta-G solvation = -2654.210097 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.84393 -38.89469 -37.41649 -35.03230 -34.34077 -31.78035 -30.21107 -28.82042 -27.29946 -26.02114 -23.64723 -23.16618 -20.63613 -19.27964 -18.64762 -18.06570 -17.63978 -16.64063 -16.55328 -15.68640 -15.53381 -15.38915 -15.20185 -14.64144 -14.48447 -14.10874 -13.83391 -13.50997 -13.18775 -12.88336 -12.69245 -12.28846 -12.12325 -12.05063 -11.73190 -11.33779 -10.89879 -10.55731 -10.12709 -8.83470 -8.38425 -8.02188 -6.47717 0.47792 0.74876 1.31350 1.36164 1.54181 2.32835 2.55365 2.74845 2.94612 3.14434 3.47374 3.86214 4.11814 4.18764 4.27993 4.42107 4.52411 4.57178 4.67418 4.75757 4.91172 5.09849 5.14811 5.20951 5.32974 5.43776 5.52483 5.72883 6.01987 6.21165 6.45438 6.58179 6.68741 6.82417 7.16302 7.23748 8.75205 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.031731 B = 0.008876 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.204235 B = 3153.674109 C = 3423.552424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.508 5.508 3 C 0.064 3.936 4 C -0.189 4.189 5 C 0.203 3.797 6 N -0.867 5.867 7 C -0.180 4.180 8 C -0.088 4.088 9 C -0.009 4.009 10 O -0.335 6.335 11 C 0.043 3.957 12 C 0.151 3.849 13 H 0.046 0.954 14 C -0.508 4.508 15 H 0.050 0.950 16 C 0.043 3.957 17 N -0.927 5.927 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.254 1.254 21 H -0.284 1.284 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.018 0.982 25 H 0.124 0.876 26 H 0.403 0.597 27 H 0.409 0.591 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 16.840 4.506 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.225 5.225 3 C -0.034 4.034 4 C -0.214 4.214 5 C 0.098 3.902 6 N -0.409 5.409 7 C -0.203 4.203 8 C -0.108 4.108 9 C -0.057 4.057 10 O -0.250 6.250 11 C -0.034 4.034 12 C 0.045 3.955 13 H 0.064 0.936 14 C -0.546 4.546 15 H 0.069 0.931 16 C -0.159 4.159 17 N -0.566 5.566 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.178 1.178 21 H -0.210 1.210 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.036 0.964 25 H 0.142 0.858 26 H 0.232 0.768 27 H 0.239 0.761 28 H 0.175 0.825 29 H 0.160 0.840 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.264 16.394 4.781 17.386 hybrid contribution 0.047 -0.515 0.016 0.517 sum 3.311 15.879 4.797 16.915 Atomic orbital electron populations 1.22082 0.85141 1.02124 0.99281 1.59779 1.09070 1.08363 1.45257 1.19175 1.01416 0.89690 0.93114 1.20266 1.09837 0.94468 0.96797 1.17540 0.94218 0.90268 0.88216 1.42287 1.72046 1.17460 1.09074 1.20579 1.07336 1.01540 0.90822 1.20425 1.00593 0.90060 0.99716 1.19300 1.07820 0.93534 0.85026 1.86154 1.66351 1.38727 1.33734 1.23514 0.94459 0.84355 1.01075 1.20301 0.96409 0.92433 0.86374 0.93561 1.20685 1.08687 0.91463 1.33794 0.93133 1.25657 1.00031 0.94684 0.95521 1.69985 1.40768 1.01089 1.44716 0.85903 0.80323 0.78788 0.79129 1.19622 1.17807 1.21024 0.91719 0.90893 0.96374 0.85826 0.76783 0.76086 0.82488 0.84007 0.86965 0.92831 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.44 8.77 127.69 1.12 3.56 16 2 N -0.51 -22.86 4.76 -699.08 -3.33 -26.19 16 3 C 0.06 2.58 5.11 38.24 0.20 2.77 16 4 C -0.19 -6.30 9.15 22.58 0.21 -6.09 16 5 C 0.20 5.33 6.75 38.10 0.26 5.59 16 6 N -0.87 -14.93 9.10 -51.40 -0.47 -15.39 16 7 C -0.18 -4.50 9.89 22.39 0.22 -4.28 16 8 C -0.09 -2.71 9.93 22.37 0.22 -2.49 16 9 C -0.01 -0.34 6.47 22.57 0.15 -0.19 16 10 O -0.33 -14.01 10.40 -96.72 -1.01 -15.01 16 11 C 0.04 1.86 6.34 72.16 0.46 2.31 16 12 C 0.15 7.30 1.95 44.37 0.09 7.39 16 13 H 0.05 2.37 5.48 -2.38 -0.01 2.36 16 14 C -0.51 -27.80 7.11 25.60 0.18 -27.62 16 15 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 16 C 0.04 2.41 5.47 84.65 0.46 2.87 16 17 N -0.93 -55.47 13.96 21.45 0.30 -55.18 16 18 Si 0.93 45.29 27.02 68.60 1.85 47.14 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.25 -12.44 6.80 99.48 0.68 -11.76 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 22 H 0.06 2.96 7.04 -2.39 -0.02 2.94 16 23 H 0.07 2.58 7.60 -2.39 -0.02 2.56 16 24 H 0.02 0.73 6.54 -2.39 -0.02 0.72 16 25 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 26 H 0.40 5.98 8.84 -92.71 -0.82 5.17 16 27 H 0.41 4.76 8.84 -92.71 -0.82 3.94 16 28 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.11 4.59 8.14 -2.39 -0.02 4.57 16 31 H 0.05 2.28 6.63 -2.39 -0.02 2.26 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -65.53 262.87 0.39 -65.14 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.51 Total: 15.67 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 3.56 Total: -16.17 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -3.50 Total: -96.76 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -1.01 Total: -15.01 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.14 kcal Total: -65.53 0.39 -65.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213270691.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.847 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds