Wall clock time and date at job start Mon Mar 30 2020 03:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.82615 * 2 1 4 4 N 1.47287 * 109.83543 * 239.10317 * 2 1 3 5 5 C 1.40380 * 117.72884 * 282.41500 * 4 2 1 6 6 C 1.38550 * 120.01876 * 166.24797 * 5 4 2 7 7 C 1.38854 * 119.82731 * 179.87426 * 6 5 4 8 8 N 1.39924 * 120.04565 * 179.97438 * 7 6 5 9 9 C 1.38861 * 119.90447 * 359.93487 * 7 6 5 10 10 C 1.38202 * 120.21094 * 0.11214 * 9 7 6 11 11 C 1.38640 * 120.15638 * 359.97438 * 10 9 7 12 12 O 1.36063 * 119.57697 * 179.66790 * 11 10 9 13 13 C 1.42956 * 117.80285 * 159.96000 * 12 11 10 14 14 H 1.09004 * 109.64726 * 169.18243 * 13 12 11 15 15 C 1.50711 * 109.52698 * 289.60120 * 13 12 11 16 16 H 1.07993 * 119.99778 * 119.25862 * 15 13 12 17 17 C 1.37874 * 119.99781 * 299.26008 * 15 13 12 18 18 N 1.31517 * 120.00048 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 120.00401 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.46884 * 89.99669 * 19 17 15 21 21 H 1.48494 * 109.47448 * 209.99648 * 19 17 15 22 22 H 1.48508 * 109.47186 * 330.00174 * 19 17 15 23 23 H 1.09003 * 109.46864 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46923 * 300.00059 * 1 2 3 25 25 H 1.09001 * 109.47184 * 59.99891 * 1 2 3 26 26 H 0.96999 * 121.13860 * 102.43115 * 4 2 1 27 27 H 1.08001 * 120.08497 * 359.85453 * 6 5 4 28 28 H 0.96997 * 120.00218 * 179.97438 * 8 7 6 29 29 H 0.97002 * 120.00238 * 359.97183 * 8 7 6 30 30 H 1.08001 * 119.89887 * 180.08899 * 9 7 6 31 31 H 1.07997 * 119.91907 * 179.97438 * 10 9 7 32 32 H 0.96998 * 119.99805 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 7 2.0298 -0.7114 -1.1889 5 6 2.0001 -2.1148 -1.1707 6 6 2.1831 -2.8272 -2.3449 7 6 2.1557 -4.2153 -2.3219 8 7 2.3394 -4.9393 -3.5051 9 6 1.9464 -4.8838 -1.1230 10 6 1.7630 -4.1720 0.0473 11 6 1.7876 -2.7860 0.0306 12 8 1.5989 -2.0969 1.1886 13 6 2.0512 -0.7417 1.2393 14 1 1.6691 -0.2613 2.1401 15 6 3.5580 -0.7135 1.2488 16 1 4.0938 -0.2177 0.4530 17 6 4.2524 -1.3208 2.2735 18 7 5.5673 -1.2966 2.2816 19 14 3.3256 -2.1779 3.6504 20 1 3.1064 -3.6013 3.2883 21 1 4.1193 -2.1024 4.9032 22 1 2.0142 -1.5114 3.8543 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.3681 -0.2269 -1.9580 27 1 2.3464 -2.3042 -3.2756 28 1 2.3204 -5.9089 -3.4883 29 1 2.4857 -4.4716 -4.3422 30 1 1.9264 -5.9635 -1.1050 31 1 1.6002 -4.6968 0.9771 32 1 6.0558 -1.7236 3.0027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213271026.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:31 Heat of formation + Delta-G solvation = -27.589458 kcal Electronic energy + Delta-G solvation = -16946.020684 eV Core-core repulsion = 14291.537493 eV Total energy + Delta-G solvation = -2654.483191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35511 -38.75641 -36.25397 -35.04969 -34.29194 -32.25302 -30.06363 -29.22459 -27.84007 -24.77096 -23.76772 -23.36452 -20.20865 -19.36361 -18.64260 -18.17655 -17.13639 -16.75346 -16.43113 -16.13851 -15.41663 -15.14224 -14.62124 -14.37026 -14.28652 -13.96625 -13.82489 -13.41331 -13.19346 -12.80453 -12.62930 -12.42622 -12.05687 -11.80274 -11.73718 -11.12436 -10.88053 -10.54587 -10.18473 -8.51780 -8.36145 -7.62659 -6.47663 0.75526 1.03963 1.35782 1.41685 1.51477 2.35938 2.58895 2.82097 3.19039 3.28245 3.40991 4.04182 4.11335 4.38823 4.42360 4.49364 4.60976 4.75804 4.91492 4.96290 5.12980 5.16565 5.31193 5.35734 5.47849 5.61785 5.69350 5.90845 6.09296 6.43084 6.61519 6.76026 7.07887 7.13569 7.24328 7.31361 8.78152 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.011275 C = 0.009496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.055223 B = 2482.752209 C = 2947.989298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.097 0.903 4 N -0.732 5.732 5 C 0.189 3.811 6 C -0.251 4.251 7 C 0.216 3.784 8 N -0.868 5.868 9 C -0.226 4.226 10 C -0.099 4.099 11 C 0.007 3.993 12 O -0.347 6.347 13 C 0.158 3.842 14 H 0.086 0.914 15 C -0.531 4.531 16 H 0.041 0.959 17 C 0.032 3.968 18 N -0.935 5.935 19 Si 0.953 3.047 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.247 1.247 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.404 0.596 27 H 0.133 0.867 28 H 0.405 0.595 29 H 0.403 0.597 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -3.337 -9.132 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.115 0.885 4 N -0.364 5.364 5 C 0.085 3.915 6 C -0.279 4.279 7 C 0.111 3.889 8 N -0.410 5.410 9 C -0.250 4.250 10 C -0.119 4.119 11 C -0.042 4.042 12 O -0.263 6.263 13 C 0.103 3.897 14 H 0.103 0.897 15 C -0.569 4.569 16 H 0.060 0.940 17 C -0.168 4.168 18 N -0.575 5.575 19 Si 0.779 3.221 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.171 1.171 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.240 0.760 27 H 0.151 0.849 28 H 0.234 0.766 29 H 0.232 0.768 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.066 -3.309 -8.677 13.696 hybrid contribution 0.689 -0.179 0.173 0.733 sum -9.377 -3.489 -8.504 13.131 Atomic orbital electron populations 1.22060 0.94029 1.01686 1.02798 1.21654 0.94172 0.96333 0.85525 0.88528 1.44520 1.71073 1.01792 1.19030 1.17720 0.96441 0.84804 0.92539 1.19921 1.18702 0.92648 0.96621 1.17362 0.93707 0.90258 0.87551 1.42212 1.83712 1.08785 1.06314 1.20221 1.14495 0.99632 0.90701 1.20296 1.01952 0.90812 0.98852 1.18442 1.09449 0.91555 0.84758 1.85910 1.78099 1.28432 1.33813 1.20946 0.92827 0.79400 0.96525 0.89678 1.21503 0.91184 1.35748 1.08447 0.94039 1.25762 0.95249 0.95333 1.00419 1.70057 1.08009 1.45148 1.34269 0.85592 0.79188 0.79815 0.77478 1.20658 1.22331 1.17070 0.94030 0.90606 0.90922 0.75973 0.84924 0.76560 0.76777 0.84407 0.86712 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.29 71.98 0.67 -3.88 16 2 C 0.13 4.87 3.34 45.03 0.15 5.02 16 3 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 4 N -0.73 -27.56 5.17 -315.90 -1.63 -29.19 16 5 C 0.19 7.76 6.10 38.09 0.23 7.99 16 6 C -0.25 -8.76 9.78 22.49 0.22 -8.54 16 7 C 0.22 6.88 6.76 38.15 0.26 7.14 16 8 N -0.87 -18.87 9.10 -51.28 -0.47 -19.33 16 9 C -0.23 -7.77 9.88 22.41 0.22 -7.55 16 10 C -0.10 -4.10 9.96 22.36 0.22 -3.88 16 11 C 0.01 0.32 5.74 22.61 0.13 0.45 16 12 O -0.35 -16.81 7.29 -94.27 -0.69 -17.49 16 13 C 0.16 7.45 2.11 30.04 0.06 7.51 16 14 H 0.09 3.87 7.18 -2.39 -0.02 3.86 16 15 C -0.53 -30.19 8.38 25.60 0.21 -29.98 16 16 H 0.04 2.59 7.94 -2.91 -0.02 2.57 16 17 C 0.03 1.92 5.47 84.65 0.46 2.38 16 18 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 19 Si 0.95 48.01 26.23 68.60 1.80 49.81 16 20 H -0.28 -14.36 7.11 99.48 0.71 -13.66 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 22 H -0.25 -11.58 6.53 99.48 0.65 -10.93 16 23 H 0.04 1.44 7.26 -2.39 -0.02 1.42 16 24 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.40 13.09 8.91 -92.71 -0.83 12.27 16 27 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 28 H 0.40 6.94 8.84 -92.71 -0.82 6.12 16 29 H 0.40 7.07 8.84 -92.71 -0.82 6.25 16 30 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 32 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -70.41 265.18 0.80 -69.62 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -1.36 Total: 28.73 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 2.84 Total: -23.33 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -1.80 Total: -107.33 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.69 Total: -17.49 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.80 Total: 49.81 kcal Total: -70.41 0.80 -69.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213271026.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.026 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds